Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47027 * 2 1 4 4 N 1.46904 * 109.46997 * 119.99909 * 2 1 3 5 5 C 1.46902 * 110.99806 * 274.99644 * 4 2 1 6 6 C 1.50704 * 109.46664 * 180.02562 * 5 4 2 7 7 C 1.38237 * 119.58807 * 95.00804 * 6 5 4 8 8 C 1.38586 * 119.18797 * 179.97438 * 7 6 5 9 9 C 1.38885 * 118.39938 * 0.02562 * 8 7 6 10 10 F 1.35101 * 120.44211 * 179.97438 * 9 8 7 11 11 C 1.38419 * 119.11284 * 359.97438 * 9 8 7 12 12 N 1.31851 * 119.58889 * 274.72890 * 6 5 4 13 13 C 1.52999 * 109.47314 * 239.99861 * 2 1 3 14 14 H 1.09004 * 109.47434 * 175.00093 * 13 2 1 15 15 C 1.52997 * 109.47114 * 294.99899 * 13 2 1 16 16 N 1.46498 * 109.46963 * 54.99692 * 13 2 1 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 13 2 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00053 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00174 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47356 * 89.99148 * 25 23 21 27 27 H 1.48497 * 109.47342 * 209.99750 * 25 23 21 28 28 H 1.48505 * 109.46847 * 329.99403 * 25 23 21 29 29 H 1.08998 * 109.47150 * 60.00138 * 1 2 3 30 30 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47050 * 299.99902 * 1 2 3 32 32 H 1.00898 * 111.00109 * 38.95663 * 4 2 1 33 33 H 1.08994 * 109.47493 * 300.00186 * 5 4 2 34 34 H 1.08998 * 109.46780 * 60.00871 * 5 4 2 35 35 H 1.07990 * 120.40403 * 359.97214 * 7 6 5 36 36 H 1.08004 * 120.80025 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.63762 * 180.02562 * 11 9 8 38 38 H 1.09009 * 109.47238 * 59.99946 * 15 13 2 39 39 H 1.08997 * 109.47293 * 179.97438 * 15 13 2 40 40 H 1.09003 * 109.47189 * 300.00067 * 15 13 2 41 41 H 0.97001 * 120.00384 * 335.00737 * 16 13 2 42 42 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 43 43 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 44 44 H 0.97000 * 120.00636 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5885 -0.5215 3.5557 7 6 3.9346 -0.4813 3.8679 8 6 4.3909 -1.1683 4.9817 9 6 3.4705 -1.8750 5.7448 10 9 3.8702 -2.5596 6.8387 11 6 2.1382 -1.8686 5.3694 12 7 1.7410 -1.1982 4.3056 13 6 2.0401 -0.7213 -1.2492 14 1 3.1264 -0.6444 -1.2951 15 6 1.6353 -2.1955 -1.1879 16 7 1.4559 -0.1037 -2.4423 17 6 2.0940 -0.1891 -3.6264 18 8 3.1494 -0.7815 -3.7051 19 6 1.4963 0.4515 -4.8525 20 16 2.5804 0.1637 -6.2730 21 6 1.6657 0.9943 -7.5292 22 1 0.7310 1.4780 -7.2863 23 6 2.1468 1.0280 -8.8307 24 7 1.4638 1.6489 -9.7691 25 14 3.7637 0.1921 -9.2507 26 1 3.5051 -1.2156 -9.6465 27 1 4.4151 0.9108 -10.3751 28 1 4.6564 0.2166 -8.0642 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4496 -1.4979 1.4101 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 4.6222 0.0784 3.2513 36 1 5.4370 -1.1543 5.2499 37 1 1.4151 -2.4150 5.9569 38 1 0.5489 -2.2724 -1.1420 39 1 1.9983 -2.7092 -2.0780 40 1 2.0700 -2.6550 -0.3001 41 1 0.6118 0.3701 -2.3794 42 1 0.5168 0.0156 -5.0492 43 1 1.3902 1.5237 -4.6872 44 1 1.7997 1.6721 -10.6787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328986435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -48.219136 kcal Electronic energy + Delta-G solvation = -25835.029159 eV Core-core repulsion = 21828.009522 eV Total energy + Delta-G solvation = -4007.019637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.48618 -40.73490 -39.72005 -37.84914 -34.88460 -33.04568 -32.48393 -32.41975 -30.70112 -29.24166 -28.50512 -26.12108 -25.61462 -24.61550 -24.27785 -22.45458 -20.82208 -19.86594 -18.19774 -17.97523 -17.80911 -17.13897 -16.49568 -16.35653 -16.01245 -15.79734 -15.18398 -14.99049 -14.91476 -14.71884 -14.46437 -14.32889 -13.94941 -13.87685 -13.44092 -13.41428 -13.17399 -12.85329 -12.79055 -12.54761 -12.40537 -12.39136 -12.01718 -11.84692 -11.26310 -11.12650 -11.00652 -10.96473 -10.58423 -10.48462 -10.17840 -9.85100 -9.49156 -9.43817 -9.02349 -8.97880 -8.81384 -8.49022 -6.90844 -6.28527 -4.00035 0.32232 0.54358 2.74598 2.95949 3.01813 3.29748 3.34233 3.44165 3.51160 3.60934 3.72930 4.00545 4.12303 4.20490 4.30254 4.33723 4.47955 4.58621 4.75037 4.80107 4.84874 4.96347 5.07297 5.10609 5.18515 5.22100 5.26478 5.32518 5.38048 5.44228 5.52372 5.54862 5.67467 5.77871 5.80763 6.02107 6.04023 6.05905 6.27664 6.45729 6.65157 6.90443 7.26938 7.64581 7.94460 8.41907 8.53545 9.17760 10.80679 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.030566 B = 0.001671 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.840867 B =16751.629574 C =17209.272881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.080 3.920 3 H 0.086 0.914 4 N -0.674 5.674 5 C 0.110 3.890 6 C 0.121 3.879 7 C -0.119 4.119 8 C -0.109 4.109 9 C 0.046 3.954 10 F -0.131 7.131 11 C 0.076 3.924 12 N -0.454 5.454 13 C 0.156 3.844 14 H 0.094 0.906 15 C -0.163 4.163 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.350 0.650 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 -3.850 32.728 32.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.031 4.031 3 H 0.105 0.895 4 N -0.306 5.306 5 C -0.020 4.020 6 C -0.017 4.017 7 C -0.139 4.139 8 C -0.136 4.136 9 C 0.024 3.976 10 F -0.109 7.109 11 C -0.083 4.083 12 N -0.162 5.162 13 C 0.050 3.950 14 H 0.112 0.888 15 C -0.221 4.221 16 N -0.390 5.390 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.169 0.831 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.232 0.768 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.332 -4.720 32.048 32.421 hybrid contribution -1.076 0.578 0.387 1.282 sum 0.255 -4.142 32.435 32.699 Atomic orbital electron populations 1.22576 0.96720 1.02974 1.02480 1.21745 0.93178 0.98251 0.89890 0.89541 1.60470 1.58126 1.09488 1.02492 1.20823 1.00859 0.94077 0.86206 1.21225 0.90004 0.95158 0.95340 1.21949 0.96529 0.99074 0.96359 1.21730 1.00772 0.96221 0.94834 1.18852 0.94816 0.96998 0.86940 1.91536 1.91255 1.77279 1.50862 1.22868 0.92779 0.97876 0.94739 1.67534 1.38269 1.06276 1.04153 1.20733 0.99525 0.92128 0.82573 0.88780 1.22183 1.01051 0.96106 1.02795 1.46150 1.26129 1.58512 1.08179 1.20252 0.84598 0.79551 0.83832 1.90700 1.22014 1.41523 1.84956 1.23288 1.04107 1.03762 0.96378 1.84790 1.31667 1.74046 1.00992 1.22326 1.10541 1.39792 0.94280 0.89421 1.24712 0.97387 0.94134 0.95066 1.69936 1.38512 1.41272 1.01999 0.86734 0.84374 0.80286 0.80455 1.19218 1.19965 1.15902 0.91589 0.91522 0.92244 0.83053 0.88897 0.92729 0.83338 0.83348 0.81553 0.92828 0.91937 0.91282 0.76841 0.88597 0.88549 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 8.68 37.16 0.32 -0.88 16 2 C 0.08 0.60 2.64 -67.71 -0.18 0.42 16 3 H 0.09 0.64 7.80 -51.93 -0.40 0.23 16 4 N -0.67 -4.75 5.59 -107.99 -0.60 -5.36 16 5 C 0.11 0.67 5.79 -4.97 -0.03 0.64 16 6 C 0.12 0.84 6.29 -82.58 -0.52 0.32 16 7 C -0.12 -0.70 9.72 -39.45 -0.38 -1.08 16 8 C -0.11 -0.63 10.16 -39.21 -0.40 -1.03 16 9 C 0.05 0.31 7.35 -39.28 -0.29 0.02 16 10 F -0.13 -0.98 17.28 2.25 0.04 -0.94 16 11 C 0.08 0.52 11.17 -17.47 -0.20 0.32 16 12 N -0.45 -3.58 10.27 -9.41 -0.10 -3.68 16 13 C 0.16 1.67 2.63 -67.93 -0.18 1.49 16 14 H 0.09 1.25 7.57 -51.93 -0.39 0.86 16 15 C -0.16 -1.71 8.87 37.16 0.33 -1.38 16 16 N -0.73 -8.86 4.99 -53.81 -0.27 -9.13 16 17 C 0.53 9.20 7.82 -10.98 -0.09 9.11 16 18 O -0.52 -10.97 15.52 5.55 0.09 -10.88 16 19 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 20 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 21 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 22 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 23 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 25 Si 0.86 21.77 27.74 -169.99 -4.72 17.05 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 29 H 0.07 0.40 6.29 -51.93 -0.33 0.08 16 30 H 0.07 0.44 6.55 -51.93 -0.34 0.10 16 31 H 0.06 0.35 7.45 -51.93 -0.39 -0.04 16 32 H 0.35 2.54 7.68 -39.29 -0.30 2.24 16 33 H 0.09 0.47 7.95 -51.93 -0.41 0.05 16 34 H 0.05 0.33 7.44 -51.93 -0.39 -0.06 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.05 0.50 6.57 -51.92 -0.34 0.15 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.65 7.13 -51.93 -0.37 0.28 16 41 H 0.40 3.73 6.58 -40.82 -0.27 3.46 16 42 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -34.19 381.63 -8.24 -42.43 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.05 Total: 2.23 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.17 Total: -6.18 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.19 Total: -43.90 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.04 Total: -0.94 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.19 -8.24 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.787 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds