Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47027 * 2 1 4 4 N 1.46904 * 109.46997 * 119.99909 * 2 1 3 5 5 C 1.46902 * 110.99806 * 274.99644 * 4 2 1 6 6 C 1.50704 * 109.46664 * 180.02562 * 5 4 2 7 7 C 1.38237 * 119.58807 * 95.00804 * 6 5 4 8 8 C 1.38586 * 119.18797 * 179.97438 * 7 6 5 9 9 C 1.38885 * 118.39938 * 0.02562 * 8 7 6 10 10 F 1.35101 * 120.44211 * 179.97438 * 9 8 7 11 11 C 1.38419 * 119.11284 * 359.97438 * 9 8 7 12 12 N 1.31851 * 119.58889 * 274.72890 * 6 5 4 13 13 C 1.52999 * 109.47314 * 239.99861 * 2 1 3 14 14 H 1.09004 * 109.47434 * 175.00093 * 13 2 1 15 15 C 1.52997 * 109.47114 * 294.99899 * 13 2 1 16 16 N 1.46498 * 109.46963 * 54.99692 * 13 2 1 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 13 2 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00053 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00174 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47356 * 89.99148 * 25 23 21 27 27 H 1.48497 * 109.47342 * 209.99750 * 25 23 21 28 28 H 1.48505 * 109.46847 * 329.99403 * 25 23 21 29 29 H 1.08998 * 109.47150 * 60.00138 * 1 2 3 30 30 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47050 * 299.99902 * 1 2 3 32 32 H 1.00898 * 111.00109 * 38.95663 * 4 2 1 33 33 H 1.08994 * 109.47493 * 300.00186 * 5 4 2 34 34 H 1.08998 * 109.46780 * 60.00871 * 5 4 2 35 35 H 1.07990 * 120.40403 * 359.97214 * 7 6 5 36 36 H 1.08004 * 120.80025 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.63762 * 180.02562 * 11 9 8 38 38 H 1.09009 * 109.47238 * 59.99946 * 15 13 2 39 39 H 1.08997 * 109.47293 * 179.97438 * 15 13 2 40 40 H 1.09003 * 109.47189 * 300.00067 * 15 13 2 41 41 H 0.97001 * 120.00384 * 335.00737 * 16 13 2 42 42 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 43 43 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 44 44 H 0.97000 * 120.00636 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5885 -0.5215 3.5557 7 6 3.9346 -0.4813 3.8679 8 6 4.3909 -1.1683 4.9817 9 6 3.4705 -1.8750 5.7448 10 9 3.8702 -2.5596 6.8387 11 6 2.1382 -1.8686 5.3694 12 7 1.7410 -1.1982 4.3056 13 6 2.0401 -0.7213 -1.2492 14 1 3.1264 -0.6444 -1.2951 15 6 1.6353 -2.1955 -1.1879 16 7 1.4559 -0.1037 -2.4423 17 6 2.0940 -0.1891 -3.6264 18 8 3.1494 -0.7815 -3.7051 19 6 1.4963 0.4515 -4.8525 20 16 2.5804 0.1637 -6.2730 21 6 1.6657 0.9943 -7.5292 22 1 0.7310 1.4780 -7.2863 23 6 2.1468 1.0280 -8.8307 24 7 1.4638 1.6489 -9.7691 25 14 3.7637 0.1921 -9.2507 26 1 3.5051 -1.2156 -9.6465 27 1 4.4151 0.9108 -10.3751 28 1 4.6564 0.2166 -8.0642 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4496 -1.4979 1.4101 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 4.6222 0.0784 3.2513 36 1 5.4370 -1.1543 5.2499 37 1 1.4151 -2.4150 5.9569 38 1 0.5489 -2.2724 -1.1420 39 1 1.9983 -2.7092 -2.0780 40 1 2.0700 -2.6550 -0.3001 41 1 0.6118 0.3701 -2.3794 42 1 0.5168 0.0156 -5.0492 43 1 1.3902 1.5237 -4.6872 44 1 1.7997 1.6721 -10.6787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328986435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -72.562604 kcal Electronic energy + Delta-G solvation = -25836.084771 eV Core-core repulsion = 21828.009522 eV Total energy + Delta-G solvation = -4008.075249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.01285 -41.23981 -40.86900 -38.74211 -35.78432 -34.66077 -33.51173 -33.29958 -31.67943 -29.97694 -29.62260 -27.83635 -26.64107 -25.31156 -24.83017 -22.94823 -21.99401 -20.78894 -19.89319 -18.68182 -18.31317 -18.11866 -17.63307 -17.13248 -16.89176 -16.87176 -16.54417 -16.28135 -15.90530 -15.48536 -15.37998 -15.02761 -14.88290 -14.87495 -14.80141 -14.35179 -14.13236 -13.92924 -13.58355 -13.33394 -13.31011 -13.15458 -13.07830 -13.00448 -12.93027 -12.69195 -12.46690 -11.88543 -11.82208 -11.76341 -11.16076 -10.94723 -10.94193 -10.66363 -10.51427 -10.10997 -9.94123 -9.38674 -8.97746 -8.50477 -6.20859 -0.16166 0.09036 1.00804 1.32300 1.48025 1.57222 1.61784 2.19723 2.26524 2.52726 2.73861 2.87866 2.97217 3.20413 3.45569 3.65004 3.76788 3.79410 3.86495 3.89359 3.97728 4.24388 4.26688 4.32868 4.47874 4.49361 4.50603 4.58409 4.69280 4.76601 4.78715 4.89685 4.90814 4.95765 5.04347 5.07947 5.23465 5.45357 5.54268 5.58998 5.71774 5.95268 6.12500 6.34296 6.52074 6.78730 6.94926 7.25710 8.61813 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.030566 B = 0.001671 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.840867 B =16751.629574 C =17209.272881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.092 3.908 3 H 0.093 0.907 4 N -0.678 5.678 5 C 0.113 3.887 6 C 0.111 3.889 7 C -0.121 4.121 8 C -0.109 4.109 9 C 0.033 3.967 10 F -0.137 7.137 11 C 0.069 3.931 12 N -0.472 5.472 13 C 0.156 3.844 14 H 0.069 0.931 15 C -0.156 4.156 16 N -0.708 5.708 17 C 0.536 3.464 18 O -0.561 6.561 19 C -0.112 4.112 20 S -0.176 6.176 21 C -0.529 4.529 22 H 0.062 0.938 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.263 1.263 27 H -0.259 1.259 28 H -0.237 1.237 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.349 0.651 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.080 0.920 41 H 0.413 0.587 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -3.749 34.437 34.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.018 4.018 3 H 0.111 0.889 4 N -0.311 5.311 5 C -0.016 4.016 6 C -0.027 4.027 7 C -0.141 4.141 8 C -0.135 4.135 9 C 0.011 3.989 10 F -0.116 7.116 11 C -0.090 4.090 12 N -0.181 5.181 13 C 0.051 3.949 14 H 0.087 0.913 15 C -0.214 4.214 16 N -0.363 5.363 17 C 0.322 3.678 18 O -0.439 6.439 19 C -0.263 4.263 20 S 0.050 5.950 21 C -0.677 4.677 22 H 0.081 0.919 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.188 1.188 27 H -0.184 1.184 28 H -0.161 1.161 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.169 0.831 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.198 0.802 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.252 0.748 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.326 -4.600 33.797 34.135 hybrid contribution -1.181 0.558 0.017 1.306 sum 0.145 -4.043 33.814 34.055 Atomic orbital electron populations 1.22555 0.95439 1.03234 1.03231 1.21567 0.93978 0.97885 0.88417 0.88864 1.60398 1.58209 1.09752 1.02693 1.20849 1.01337 0.93950 0.85421 1.21442 0.90498 0.95215 0.95559 1.22176 0.96473 0.98984 0.96468 1.22002 1.01629 0.95457 0.94452 1.19002 0.95224 0.97518 0.87112 1.91518 1.91313 1.77523 1.51233 1.23126 0.93270 0.97863 0.94736 1.67544 1.38887 1.06979 1.04723 1.20826 0.98195 0.92753 0.83141 0.91309 1.22111 1.02053 0.95503 1.01773 1.45914 1.26108 1.57271 1.07017 1.19926 0.84149 0.79150 0.84602 1.90692 1.23959 1.43660 1.85626 1.23286 1.03232 1.05361 0.94412 1.84727 1.33516 1.73741 1.02984 1.22474 1.09969 1.39579 0.95640 0.91929 1.25552 1.00531 0.94762 0.95095 1.70012 1.40244 1.42578 1.02640 0.85874 0.80598 0.79506 0.80437 1.18788 1.18360 1.16056 0.91125 0.91512 0.91212 0.83121 0.87649 0.92472 0.81555 0.81482 0.80161 0.91193 0.95080 0.90134 0.74832 0.86991 0.86755 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 8.68 71.98 0.62 -1.16 16 2 C 0.09 1.14 2.64 44.91 0.12 1.26 16 3 H 0.09 1.09 7.80 -2.39 -0.02 1.07 16 4 N -0.68 -8.08 5.59 -495.57 -2.77 -10.85 16 5 C 0.11 1.12 5.79 85.56 0.50 1.62 16 6 C 0.11 1.36 6.29 42.56 0.27 1.63 16 7 C -0.12 -1.20 9.72 22.35 0.22 -0.98 16 8 C -0.11 -1.10 10.16 22.51 0.23 -0.87 16 9 C 0.03 0.42 7.35 22.47 0.17 0.59 16 10 F -0.14 -1.96 17.28 44.97 0.78 -1.18 16 11 C 0.07 0.87 11.17 84.73 0.95 1.82 16 12 N -0.47 -6.86 10.27 -183.70 -1.89 -8.75 16 13 C 0.16 3.08 2.63 44.99 0.12 3.19 16 14 H 0.07 1.78 7.57 -2.39 -0.02 1.76 16 15 C -0.16 -3.07 8.87 71.98 0.64 -2.43 16 16 N -0.71 -15.66 4.99 -442.53 -2.21 -17.87 16 17 C 0.54 17.91 7.82 87.66 0.69 18.60 16 18 O -0.56 -23.69 15.52 -3.04 -0.05 -23.73 16 19 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 20 S -0.18 -8.85 18.55 -56.49 -1.05 -9.90 16 21 C -0.53 -30.66 10.04 67.96 0.68 -29.98 16 22 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 23 C 0.05 2.69 5.50 84.86 0.47 3.16 16 24 N -0.92 -55.65 13.97 21.65 0.30 -55.35 16 25 Si 0.91 44.97 27.74 68.60 1.90 46.87 16 26 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 29 H 0.07 0.62 6.29 -2.39 -0.02 0.60 16 30 H 0.07 0.67 6.55 -2.39 -0.02 0.65 16 31 H 0.07 0.58 7.45 -2.39 -0.02 0.56 16 32 H 0.35 4.32 7.68 -89.70 -0.69 3.63 16 33 H 0.11 0.77 7.95 -2.39 -0.02 0.75 16 34 H 0.06 0.55 7.44 -2.39 -0.02 0.53 16 35 H 0.17 0.96 8.06 -2.92 -0.02 0.94 16 36 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.07 1.14 6.57 -2.38 -0.02 1.12 16 39 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.40 7.13 -2.39 -0.02 1.38 16 41 H 0.41 6.53 6.58 -92.71 -0.61 5.92 16 42 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 43 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -74.73 381.63 0.82 -73.90 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.29 Total: 14.10 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 6.09 Total: -7.24 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -6.56 Total: -92.82 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -74.73 0.82 -73.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.340 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds