Wall clock time and date at job start Sat Apr 11 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 N 1.46895 * 109.47138 * 120.00179 * 2 1 3 5 5 C 1.46899 * 111.00027 * 274.99867 * 4 2 1 6 6 C 1.50705 * 109.47199 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.58933 * 95.00122 * 6 5 4 8 8 C 1.38595 * 119.18830 * 179.97438 * 7 6 5 9 9 C 1.38874 * 118.39939 * 359.97438 * 8 7 6 10 10 F 1.35096 * 120.44356 * 179.97438 * 9 8 7 11 11 C 1.38425 * 119.11429 * 359.97438 * 9 8 7 12 12 N 1.31844 * 119.58892 * 275.00105 * 6 5 4 13 13 C 1.52998 * 109.46969 * 240.00334 * 2 1 3 14 14 H 1.08995 * 109.47132 * 299.99625 * 13 2 1 15 15 C 1.53002 * 109.46969 * 179.97438 * 13 2 1 16 16 N 1.46495 * 109.47436 * 59.99980 * 13 2 1 17 17 C 1.34780 * 120.00407 * 205.00235 * 16 13 2 18 18 O 1.21281 * 119.99607 * 359.97438 * 17 16 13 19 19 C 1.50697 * 120.00315 * 179.97438 * 17 16 13 20 20 S 1.81002 * 109.47041 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99669 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00188 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99814 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99992 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99969 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47427 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47088 * 119.99975 * 25 23 21 28 28 H 1.48501 * 109.47568 * 239.99770 * 25 23 21 29 29 H 1.08996 * 109.47026 * 59.99782 * 1 2 3 30 30 H 1.08995 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46804 * 300.00060 * 1 2 3 32 32 H 1.00905 * 110.99921 * 151.04919 * 4 2 1 33 33 H 1.08994 * 109.47321 * 60.00272 * 5 4 2 34 34 H 1.09003 * 109.47447 * 299.99966 * 5 4 2 35 35 H 1.08002 * 120.40561 * 0.24999 * 7 6 5 36 36 H 1.08000 * 120.79517 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.63829 * 179.97438 * 11 9 8 38 38 H 1.09006 * 109.47261 * 179.97438 * 15 13 2 39 39 H 1.09001 * 109.47289 * 299.99666 * 15 13 2 40 40 H 1.08996 * 109.47543 * 59.99781 * 15 13 2 41 41 H 0.97004 * 119.99785 * 24.99871 * 16 13 2 42 42 H 1.08998 * 109.47230 * 299.99959 * 19 17 16 43 43 H 1.09011 * 109.46956 * 59.99876 * 19 17 16 44 44 H 0.96996 * 119.99907 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5886 -0.5216 3.5557 7 6 3.9346 -0.4815 3.8678 8 6 4.3909 -1.1685 4.9817 9 6 3.4704 -1.8742 5.7454 10 9 3.8701 -2.5587 6.8393 11 6 2.1379 -1.8669 5.3707 12 7 1.7420 -1.2028 4.3024 13 6 2.0400 -0.7212 -1.2493 14 1 1.6767 -1.7488 -1.2493 15 6 3.5700 -0.7206 -1.2496 16 7 1.5517 -0.0306 -2.4454 17 6 1.4229 -0.7029 -3.6064 18 8 1.7117 -1.8795 -3.6610 19 6 0.9200 0.0074 -4.8367 20 16 0.8599 -1.1554 -6.2225 21 6 0.2567 -0.0901 -7.4897 22 1 0.0465 0.9461 -7.2695 23 6 0.0506 -0.5829 -8.7709 24 7 0.3053 -1.8462 -9.0390 25 14 -0.5895 0.5462 -10.1142 26 1 -0.7956 1.9082 -9.5595 27 1 0.3980 0.6075 -11.2216 28 1 -1.8793 0.0208 -10.6297 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9174 -1.1205 1.0286 33 1 1.0872 0.6162 2.5525 34 1 2.7589 1.0462 2.1182 35 1 4.6216 0.0819 3.2537 36 1 5.4370 -1.1545 5.2497 37 1 1.4148 -2.4132 5.9582 38 1 3.9334 -1.2348 -2.1394 39 1 3.9330 0.3072 -1.2498 40 1 3.9338 -1.2342 -0.3597 41 1 1.3210 0.9106 -2.4018 42 1 -0.0793 0.3992 -4.6471 43 1 1.5923 0.8298 -5.0818 44 1 0.1617 -2.1905 -9.9343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328986439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:16 Heat of formation + Delta-G solvation = -48.217636 kcal Electronic energy + Delta-G solvation = -25784.889010 eV Core-core repulsion = 21777.869438 eV Total energy + Delta-G solvation = -4007.019572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.47051 -40.71228 -39.63774 -37.71801 -34.77116 -33.03349 -32.44061 -32.38282 -30.67289 -29.72025 -28.48192 -26.04530 -25.48826 -24.45632 -23.65485 -22.36372 -20.68832 -20.32314 -18.22240 -17.94731 -17.80153 -17.16980 -16.60919 -16.29908 -16.10608 -15.64515 -15.06268 -14.89349 -14.80271 -14.64329 -14.42360 -14.14212 -13.97590 -13.65782 -13.58312 -13.35434 -13.17970 -13.03441 -12.68151 -12.54480 -12.33441 -12.05007 -11.86221 -11.65388 -11.42096 -11.07408 -11.02184 -10.81365 -10.73211 -10.48687 -10.07187 -9.80745 -9.46912 -9.37487 -9.08242 -8.95790 -8.80406 -8.23181 -6.50041 -6.22128 -3.92462 0.32513 0.55495 2.89631 3.07311 3.09695 3.21237 3.27640 3.31841 3.45338 3.61634 3.76671 3.95618 4.13058 4.20028 4.21068 4.30211 4.39850 4.72850 4.80696 4.90942 4.96709 5.05386 5.12545 5.13228 5.25960 5.29463 5.30901 5.38236 5.41055 5.50031 5.62643 5.64449 5.72021 5.88290 5.95974 6.04861 6.09900 6.13512 6.18069 6.52623 6.67967 6.94298 7.35744 7.59567 7.69793 8.35076 8.61678 9.23411 10.85358 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.038111 B = 0.001582 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.518448 B =17690.977544 C =17875.460084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.050 0.950 4 N -0.673 5.673 5 C 0.110 3.890 6 C 0.123 3.877 7 C -0.138 4.138 8 C -0.108 4.108 9 C 0.045 3.955 10 F -0.130 7.130 11 C 0.079 3.921 12 N -0.435 5.435 13 C 0.142 3.858 14 H 0.097 0.903 15 C -0.169 4.169 16 N -0.731 5.731 17 C 0.534 3.466 18 O -0.515 6.515 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.344 0.656 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.169 0.831 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.350 6.952 29.821 31.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 H 0.068 0.932 4 N -0.308 5.308 5 C -0.019 4.019 6 C -0.015 4.015 7 C -0.158 4.158 8 C -0.134 4.134 9 C 0.023 3.977 10 F -0.109 7.109 11 C -0.080 4.080 12 N -0.143 5.143 13 C 0.036 3.964 14 H 0.115 0.885 15 C -0.228 4.228 16 N -0.386 5.386 17 C 0.320 3.680 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.186 0.814 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.344 4.553 29.554 30.568 hybrid contribution 1.016 2.884 -0.471 3.094 sum 7.360 7.437 29.082 30.908 Atomic orbital electron populations 1.21797 0.93516 1.03169 1.01338 1.21741 0.96848 0.95779 0.88460 0.93168 1.60464 1.34080 1.32713 1.03579 1.20832 1.02185 0.92224 0.86679 1.21230 0.89561 0.95027 0.95730 1.21967 0.96572 0.99997 0.97289 1.21666 1.00701 0.96264 0.94797 1.18881 0.94845 0.97014 0.86946 1.91535 1.91249 1.77258 1.50864 1.22993 0.92738 0.97772 0.94519 1.67581 1.38117 1.05312 1.03290 1.20928 0.93516 0.98416 0.83542 0.88460 1.22271 0.95793 1.01922 1.02789 1.45974 1.69524 1.13792 1.09318 1.20288 0.76795 0.87208 0.83666 1.90706 1.48134 1.15724 1.84330 1.23533 1.03660 1.04841 0.98373 1.85410 1.86291 1.12903 0.98737 1.22913 1.50887 0.98198 0.96367 0.90885 1.24993 0.95103 0.95528 0.97969 1.70025 1.45605 1.13204 1.21426 0.86119 0.78535 0.80128 0.80719 1.19631 1.20586 1.20557 0.92055 0.91537 0.92642 0.83462 0.88661 0.93106 0.83781 0.83411 0.81431 0.91031 0.92612 0.92069 0.76944 0.89220 0.89293 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.26 37.16 0.34 -0.94 16 2 C 0.08 0.68 2.28 -67.72 -0.15 0.52 16 3 H 0.05 0.35 7.80 -51.93 -0.40 -0.06 16 4 N -0.67 -5.37 6.30 -107.99 -0.68 -6.05 16 5 C 0.11 0.73 5.79 -4.97 -0.03 0.70 16 6 C 0.12 0.91 6.29 -82.59 -0.52 0.39 16 7 C -0.14 -0.76 9.72 -39.45 -0.38 -1.14 16 8 C -0.11 -0.61 10.16 -39.21 -0.40 -1.01 16 9 C 0.04 0.32 7.34 -39.28 -0.29 0.03 16 10 F -0.13 -1.00 17.28 2.25 0.04 -0.96 16 11 C 0.08 0.59 11.17 -17.47 -0.20 0.40 16 12 N -0.43 -3.92 10.27 -9.42 -0.10 -4.02 16 13 C 0.14 1.55 2.29 -67.93 -0.16 1.40 16 14 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 15 C -0.17 -1.67 9.25 37.16 0.34 -1.32 16 16 N -0.73 -9.10 4.38 -53.81 -0.24 -9.33 16 17 C 0.53 9.60 7.81 -10.99 -0.09 9.51 16 18 O -0.52 -11.40 15.52 5.56 0.09 -11.32 16 19 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 25 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H 0.06 0.55 7.44 -51.93 -0.39 0.17 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 32 H 0.34 2.57 6.16 -39.29 -0.24 2.33 16 33 H 0.10 0.69 7.44 -51.93 -0.39 0.30 16 34 H 0.05 0.24 7.95 -51.93 -0.41 -0.17 16 35 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 36 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.48 6.21 -51.93 -0.32 0.15 16 41 H 0.40 3.80 8.39 -40.82 -0.34 3.46 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -34.98 388.37 -8.84 -43.83 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.20 Total: 2.04 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.10 Total: -7.14 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.28 Total: -44.76 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.98 -8.84 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.390 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds