Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 N 1.46498 * 109.47157 * 175.00074 * 4 2 1 6 6 C 1.34778 * 120.00164 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99701 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00096 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47074 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00006 * 179.97438 * 9 8 6 11 11 H 1.07995 * 119.99748 * 0.02562 * 10 9 8 12 12 C 1.38794 * 119.99750 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00400 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99960 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46840 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46830 * 119.99991 * 14 12 10 17 17 H 1.48499 * 109.47448 * 239.99925 * 14 12 10 18 18 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 19 19 C 1.46901 * 111.00443 * 306.04832 * 18 2 1 20 20 C 1.46906 * 110.99820 * 70.00145 * 18 2 1 21 21 C 1.50696 * 109.47351 * 169.99890 * 20 18 2 22 22 C 1.38232 * 119.59172 * 94.99749 * 21 20 18 23 23 C 1.38594 * 119.19331 * 180.02562 * 22 21 20 24 24 C 1.38881 * 118.39815 * 359.97438 * 23 22 21 25 25 F 1.35095 * 120.44351 * 179.97438 * 24 23 22 26 26 C 1.38422 * 119.11181 * 0.02562 * 24 23 22 27 27 N 1.31842 * 119.58993 * 274.73367 * 21 20 18 28 28 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 29 29 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 30 30 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46617 * 294.99711 * 4 2 1 32 32 H 1.09001 * 109.47284 * 54.99372 * 4 2 1 33 33 H 0.97005 * 119.99841 * 359.97438 * 5 4 2 34 34 H 1.08995 * 109.47152 * 299.99466 * 8 6 5 35 35 H 1.09004 * 109.47188 * 60.00083 * 8 6 5 36 36 H 0.97005 * 119.99999 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47401 * 183.95136 * 19 18 2 38 38 H 1.09001 * 109.46874 * 63.95149 * 19 18 2 39 39 H 1.09004 * 109.46970 * 303.95282 * 19 18 2 40 40 H 1.08997 * 109.46995 * 289.99871 * 20 18 2 41 41 H 1.09001 * 109.46848 * 49.99877 * 20 18 2 42 42 H 1.07999 * 120.40594 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.80352 * 180.02562 * 23 22 21 44 44 H 1.07995 * 119.63773 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4284 2.1911 7 8 3.5701 -1.8826 3.1403 8 6 5.6750 -1.5370 2.1304 9 16 6.2785 -2.3888 3.6090 10 6 8.0101 -2.3774 3.2833 11 1 8.3862 -1.9255 2.3774 12 6 8.8907 -2.9492 4.1911 13 7 8.4323 -3.5005 5.2950 14 14 10.7265 -2.9378 3.8456 15 1 10.9815 -2.2633 2.5474 16 1 11.4296 -2.2061 4.9298 17 1 11.2275 -4.3344 3.7852 18 7 2.0196 -0.6926 -1.1994 19 6 1.4343 -2.0355 -1.3078 20 6 1.7529 0.0972 -2.4090 21 6 2.4773 -0.5163 -3.5794 22 6 1.8114 -1.4013 -4.4066 23 6 2.4858 -1.9610 -5.4803 24 6 3.8132 -1.6071 -5.6837 25 9 4.5100 -2.1283 -6.7171 26 6 4.4131 -0.7140 -4.8127 27 7 3.7368 -0.1983 -3.8048 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7199 1.2952 33 1 3.9824 -0.4628 0.4315 34 1 5.9630 -2.1006 1.2431 35 1 6.1099 -0.5386 2.0838 36 1 9.0478 -3.8998 5.9296 37 1 1.8663 -2.5522 -2.1648 38 1 0.3555 -1.9520 -1.4399 39 1 1.6466 -2.5988 -0.3991 40 1 0.6814 0.1052 -2.6087 41 1 2.1025 1.1188 -2.2603 42 1 0.7785 -1.6541 -4.2181 43 1 1.9907 -2.6551 -6.1433 44 1 5.4451 -0.4332 -4.9626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329386361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = -37.960488 kcal Electronic energy + Delta-G solvation = -26505.704582 eV Core-core repulsion = 22499.129793 eV Total energy + Delta-G solvation = -4006.574788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.37008 -40.75931 -39.41252 -38.21701 -34.38564 -32.96099 -32.50116 -32.36748 -30.57079 -29.23788 -27.85874 -26.17062 -25.43205 -24.95922 -24.21009 -22.27771 -20.23393 -20.02633 -18.07105 -17.75528 -17.70733 -16.92628 -16.83768 -16.14601 -16.09855 -15.87213 -15.10322 -14.78992 -14.75182 -14.72823 -14.44209 -14.16926 -14.01094 -13.70443 -13.54972 -13.26348 -13.08102 -12.84247 -12.60755 -12.53199 -12.36902 -12.27872 -11.94270 -11.69793 -11.46548 -11.08312 -11.02386 -10.95509 -10.70007 -10.38081 -9.98688 -9.74020 -9.33500 -9.27897 -9.02120 -8.73478 -8.63317 -8.15403 -6.42746 -6.16257 -3.85721 0.42023 0.64322 3.00687 3.15061 3.24242 3.25954 3.32814 3.39115 3.54047 3.64364 3.83810 3.91622 4.15237 4.26291 4.30122 4.37616 4.48520 4.66526 4.84071 4.85860 4.92909 5.02959 5.16322 5.18547 5.18906 5.26795 5.33628 5.36243 5.37001 5.39769 5.50319 5.59018 5.66368 5.75185 5.80857 5.93857 6.02011 6.14095 6.26709 6.59860 6.62650 6.84261 7.44711 7.65936 7.94277 8.41592 8.77801 9.29359 10.91247 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.002575 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.775747 B =10871.123251 C =13252.082340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.070 3.930 3 H 0.093 0.907 4 C 0.132 3.868 5 N -0.726 5.726 6 C 0.531 3.469 7 O -0.526 6.526 8 C -0.151 4.151 9 S -0.063 6.063 10 C -0.532 4.532 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.869 5.869 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.524 5.524 19 C 0.014 3.986 20 C 0.104 3.896 21 C 0.129 3.871 22 C -0.138 4.138 23 C -0.109 4.109 24 C 0.045 3.955 25 F -0.130 7.130 26 C 0.081 3.919 27 N -0.435 5.435 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.406 0.594 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.267 0.733 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 7.990 -23.364 30.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.039 4.039 3 H 0.111 0.889 4 C 0.007 3.993 5 N -0.381 5.381 6 C 0.317 3.683 7 O -0.401 6.401 8 C -0.302 4.302 9 S 0.164 5.836 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.248 5.248 19 C -0.134 4.134 20 C -0.024 4.024 21 C -0.010 4.010 22 C -0.159 4.159 23 C -0.135 4.135 24 C 0.023 3.977 25 F -0.109 7.109 26 C -0.078 4.078 27 N -0.143 5.143 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.241 0.759 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.359 7.667 -21.037 28.955 hybrid contribution 0.962 -0.069 -2.644 2.814 sum -17.398 7.599 -23.680 30.351 Atomic orbital electron populations 1.22405 0.96301 1.02919 1.02818 1.22029 0.93483 0.98756 0.89614 0.88886 1.21271 0.81633 1.00446 0.95942 1.45828 1.06576 1.61417 1.24243 1.20277 0.89450 0.76869 0.81743 1.90687 1.69932 1.46578 1.32906 1.23502 0.93818 1.05525 1.07315 1.85350 1.04532 1.73339 1.20426 1.22922 0.91615 1.43990 1.09545 0.90897 1.24990 0.99544 0.94624 0.94497 1.70037 1.35211 1.35744 1.09426 0.86126 0.83087 0.77943 0.78399 1.19592 1.20610 1.20614 1.62069 1.58854 1.02840 1.01040 1.22559 0.97068 0.90337 1.03471 1.20956 0.96684 0.97935 0.86845 1.21153 0.90310 0.94122 0.95380 1.21927 1.01721 0.97387 0.94854 1.21646 0.92978 1.00196 0.98727 1.18871 0.91531 0.98578 0.88726 1.91535 1.78610 1.85062 1.55705 1.22998 1.01070 0.93573 0.90185 1.67573 1.07618 1.22768 1.16378 0.91266 0.92149 0.91668 0.91187 0.91790 0.75903 0.89336 0.89342 0.92322 0.91549 0.94840 0.90433 0.92633 0.88542 0.84041 0.83540 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.09 8.44 37.16 0.31 -0.78 16 2 C 0.07 0.54 2.47 -67.71 -0.17 0.37 16 3 H 0.09 0.68 7.93 -51.93 -0.41 0.26 16 4 C 0.13 1.50 4.85 -4.04 -0.02 1.48 16 5 N -0.73 -10.19 5.39 -60.29 -0.32 -10.51 16 6 C 0.53 10.27 7.85 -10.99 -0.09 10.18 16 7 O -0.53 -12.21 15.86 5.55 0.09 -12.13 16 8 C -0.15 -3.19 6.16 36.00 0.22 -2.97 16 9 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 10 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 11 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.61 13.22 55.49 0.73 -25.88 16 14 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 N -0.52 -4.20 4.14 -236.33 -0.98 -5.18 16 19 C 0.01 0.11 8.32 60.07 0.50 0.61 16 20 C 0.10 0.69 4.86 -4.97 -0.02 0.67 16 21 C 0.13 1.03 5.64 -82.59 -0.47 0.56 16 22 C -0.14 -0.87 8.35 -39.45 -0.33 -1.20 16 23 C -0.11 -0.72 10.16 -39.21 -0.40 -1.12 16 24 C 0.04 0.37 7.35 -39.28 -0.29 0.08 16 25 F -0.13 -1.17 17.28 2.25 0.04 -1.13 16 26 C 0.08 0.71 11.17 -17.46 -0.20 0.51 16 27 N -0.44 -4.26 10.27 -9.42 -0.10 -4.36 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.06 0.29 6.91 -51.93 -0.36 -0.07 16 30 H 0.06 0.40 6.42 -51.93 -0.33 0.07 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.79 6.71 -51.93 -0.35 0.44 16 33 H 0.41 5.08 8.14 -40.82 -0.33 4.75 16 34 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 0.54 6.40 -51.93 -0.33 0.21 16 38 H 0.03 0.20 6.46 -51.93 -0.34 -0.13 16 39 H 0.08 0.75 6.40 -51.93 -0.33 0.42 16 40 H 0.06 0.27 6.96 -51.93 -0.36 -0.10 16 41 H 0.10 0.65 7.93 -51.93 -0.41 0.23 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -35.67 381.34 -8.83 -44.50 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.06 Total: 0.94 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.74 Total: -4.82 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.67 Total: -45.93 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.67 -8.83 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329386361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.541 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds