Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 N 1.46498 * 109.47157 * 175.00074 * 4 2 1 6 6 C 1.34778 * 120.00164 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99701 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00096 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47074 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00006 * 179.97438 * 9 8 6 11 11 H 1.07995 * 119.99748 * 0.02562 * 10 9 8 12 12 C 1.38794 * 119.99750 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00400 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99960 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46840 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46830 * 119.99991 * 14 12 10 17 17 H 1.48499 * 109.47448 * 239.99925 * 14 12 10 18 18 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 19 19 C 1.46901 * 111.00443 * 306.04832 * 18 2 1 20 20 C 1.46906 * 110.99820 * 70.00145 * 18 2 1 21 21 C 1.50696 * 109.47351 * 169.99890 * 20 18 2 22 22 C 1.38232 * 119.59172 * 94.99749 * 21 20 18 23 23 C 1.38594 * 119.19331 * 180.02562 * 22 21 20 24 24 C 1.38881 * 118.39815 * 359.97438 * 23 22 21 25 25 F 1.35095 * 120.44351 * 179.97438 * 24 23 22 26 26 C 1.38422 * 119.11181 * 0.02562 * 24 23 22 27 27 N 1.31842 * 119.58993 * 274.73367 * 21 20 18 28 28 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 29 29 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 30 30 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46617 * 294.99711 * 4 2 1 32 32 H 1.09001 * 109.47284 * 54.99372 * 4 2 1 33 33 H 0.97005 * 119.99841 * 359.97438 * 5 4 2 34 34 H 1.08995 * 109.47152 * 299.99466 * 8 6 5 35 35 H 1.09004 * 109.47188 * 60.00083 * 8 6 5 36 36 H 0.97005 * 119.99999 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47401 * 183.95136 * 19 18 2 38 38 H 1.09001 * 109.46874 * 63.95149 * 19 18 2 39 39 H 1.09004 * 109.46970 * 303.95282 * 19 18 2 40 40 H 1.08997 * 109.46995 * 289.99871 * 20 18 2 41 41 H 1.09001 * 109.46848 * 49.99877 * 20 18 2 42 42 H 1.07999 * 120.40594 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.80352 * 180.02562 * 23 22 21 44 44 H 1.07995 * 119.63773 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4284 2.1911 7 8 3.5701 -1.8826 3.1403 8 6 5.6750 -1.5370 2.1304 9 16 6.2785 -2.3888 3.6090 10 6 8.0101 -2.3774 3.2833 11 1 8.3862 -1.9255 2.3774 12 6 8.8907 -2.9492 4.1911 13 7 8.4323 -3.5005 5.2950 14 14 10.7265 -2.9378 3.8456 15 1 10.9815 -2.2633 2.5474 16 1 11.4296 -2.2061 4.9298 17 1 11.2275 -4.3344 3.7852 18 7 2.0196 -0.6926 -1.1994 19 6 1.4343 -2.0355 -1.3078 20 6 1.7529 0.0972 -2.4090 21 6 2.4773 -0.5163 -3.5794 22 6 1.8114 -1.4013 -4.4066 23 6 2.4858 -1.9610 -5.4803 24 6 3.8132 -1.6071 -5.6837 25 9 4.5100 -2.1283 -6.7171 26 6 4.4131 -0.7140 -4.8127 27 7 3.7368 -0.1983 -3.8048 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7199 1.2952 33 1 3.9824 -0.4628 0.4315 34 1 5.9630 -2.1006 1.2431 35 1 6.1099 -0.5386 2.0838 36 1 9.0478 -3.8998 5.9296 37 1 1.8663 -2.5522 -2.1648 38 1 0.3555 -1.9520 -1.4399 39 1 1.6466 -2.5988 -0.3991 40 1 0.6814 0.1052 -2.6087 41 1 2.1025 1.1188 -2.2603 42 1 0.7785 -1.6541 -4.2181 43 1 1.9907 -2.6551 -6.1433 44 1 5.4451 -0.4332 -4.9626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329386361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = -63.703332 kcal Electronic energy + Delta-G solvation = -26506.820875 eV Core-core repulsion = 22499.129793 eV Total energy + Delta-G solvation = -4007.691082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.00565 -41.33712 -40.62813 -39.16882 -35.52115 -34.58061 -33.50190 -33.32012 -31.43048 -30.53396 -28.43906 -27.72877 -26.88319 -25.73577 -24.76846 -22.87274 -21.61657 -20.84338 -19.75102 -18.65524 -18.28320 -17.77635 -17.57142 -17.51463 -16.94703 -16.87135 -16.79700 -16.31994 -15.88161 -15.52587 -15.33528 -14.96170 -14.80909 -14.73090 -14.53969 -14.30124 -14.11426 -13.95171 -13.73585 -13.39695 -13.15383 -13.08892 -12.97628 -12.91340 -12.85872 -12.57807 -12.42947 -12.15139 -11.77568 -11.67450 -11.15378 -10.91807 -10.90807 -10.56179 -10.26993 -10.00205 -9.90262 -9.23094 -8.65626 -8.34430 -6.12114 -0.14468 0.11424 1.28409 1.41365 1.47792 1.59744 1.67818 2.27127 2.35774 2.48540 2.98810 2.99464 3.09514 3.32518 3.35501 3.66239 3.77136 3.79895 3.88155 4.02030 4.12435 4.26943 4.31031 4.33374 4.39385 4.48854 4.52901 4.65397 4.66070 4.68477 4.77360 4.85423 4.87609 4.88143 4.97244 5.07226 5.12101 5.32549 5.42441 5.53660 5.60484 6.05839 6.06769 6.20605 6.61858 6.87844 7.06898 7.32719 8.75121 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.002575 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.775747 B =10871.123251 C =13252.082340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.081 3.919 3 H 0.103 0.897 4 C 0.129 3.871 5 N -0.700 5.700 6 C 0.532 3.468 7 O -0.571 6.571 8 C -0.128 4.128 9 S -0.149 6.149 10 C -0.546 4.546 11 H 0.080 0.920 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.258 1.258 16 H -0.272 1.272 17 H -0.273 1.273 18 N -0.540 5.540 19 C 0.017 3.983 20 C 0.108 3.892 21 C 0.117 3.883 22 C -0.131 4.131 23 C -0.107 4.107 24 C 0.030 3.970 25 F -0.139 7.139 26 C 0.065 3.935 27 N -0.464 5.464 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.416 0.584 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.172 0.828 43 H 0.170 0.830 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.191 8.978 -25.567 33.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 H 0.121 0.879 4 C 0.004 3.996 5 N -0.353 5.353 6 C 0.317 3.683 7 O -0.450 6.450 8 C -0.279 4.279 9 S 0.079 5.921 10 C -0.694 4.694 11 H 0.098 0.902 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.182 1.182 16 H -0.198 1.198 17 H -0.198 1.198 18 N -0.265 5.265 19 C -0.130 4.130 20 C -0.020 4.020 21 C -0.021 4.021 22 C -0.151 4.151 23 C -0.133 4.133 24 C 0.008 3.992 25 F -0.118 7.118 26 C -0.094 4.094 27 N -0.172 5.172 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.189 0.811 43 H 0.188 0.812 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.236 8.687 -23.296 31.436 hybrid contribution 1.109 -0.340 -2.034 2.342 sum -18.127 8.347 -25.330 32.248 Atomic orbital electron populations 1.22357 0.94375 1.03181 1.03929 1.21910 0.94786 0.98315 0.87699 0.87923 1.21500 0.79368 1.00569 0.98128 1.45626 1.07907 1.59031 1.22705 1.19987 0.88712 0.77253 0.82304 1.90674 1.70388 1.48990 1.34936 1.23346 0.95303 1.05453 1.03829 1.85492 1.05759 1.75223 1.25661 1.23231 0.91783 1.44349 1.10023 0.90185 1.26127 1.05228 0.93778 0.94012 1.70191 1.37315 1.36633 1.10619 0.84903 0.75862 0.78336 0.78821 1.18195 1.19765 1.19831 1.61983 1.59630 1.03144 1.01697 1.22485 0.98483 0.89993 1.02080 1.20998 0.98031 0.97360 0.85607 1.21497 0.90004 0.94537 0.96094 1.22227 1.02880 0.96137 0.93860 1.21972 0.92255 1.00077 0.99036 1.19037 0.92391 0.99049 0.88728 1.91510 1.78963 1.85227 1.56068 1.23130 1.01582 0.94140 0.90520 1.67555 1.08819 1.23797 1.17058 0.91083 0.90133 0.91815 0.91594 0.92663 0.74658 0.88018 0.87613 0.91970 0.91880 0.92560 0.92788 0.89939 0.88590 0.81069 0.81250 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.44 71.98 0.61 -0.93 16 2 C 0.08 1.05 2.47 44.92 0.11 1.16 16 3 H 0.10 1.19 7.93 -2.39 -0.02 1.17 16 4 C 0.13 2.78 4.85 86.38 0.42 3.20 16 5 N -0.70 -18.97 5.39 -463.05 -2.50 -21.47 16 6 C 0.53 20.64 7.85 87.66 0.69 21.32 16 7 O -0.57 -27.20 15.86 -3.04 -0.05 -27.25 16 8 C -0.13 -5.41 6.16 71.23 0.44 -4.97 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 10 C -0.55 -32.13 9.50 67.95 0.65 -31.48 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.77 5.49 84.86 0.47 1.23 16 13 N -0.91 -56.90 13.22 21.65 0.29 -56.61 16 14 Si 1.00 44.64 29.55 68.60 2.03 46.67 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 N -0.54 -7.34 4.14 -901.60 -3.74 -11.08 16 19 C 0.02 0.23 8.32 127.69 1.06 1.30 16 20 C 0.11 1.10 4.86 85.55 0.42 1.51 16 21 C 0.12 1.61 5.64 42.55 0.24 1.85 16 22 C -0.13 -1.26 8.35 22.35 0.19 -1.07 16 23 C -0.11 -1.19 10.16 22.51 0.23 -0.96 16 24 C 0.03 0.47 7.35 22.47 0.17 0.63 16 25 F -0.14 -2.45 17.28 44.97 0.78 -1.67 16 26 C 0.06 1.11 11.17 84.73 0.95 2.06 16 27 N -0.46 -8.62 10.27 -183.71 -1.89 -10.51 16 28 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.08 0.41 6.91 -2.39 -0.02 0.40 16 30 H 0.06 0.59 6.42 -2.39 -0.02 0.58 16 31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.06 1.33 6.71 -2.39 -0.02 1.32 16 33 H 0.42 9.74 8.14 -92.70 -0.75 8.99 16 34 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 35 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 36 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 37 H 0.06 0.89 6.40 -2.39 -0.02 0.88 16 38 H 0.06 0.49 6.46 -2.39 -0.02 0.48 16 39 H 0.05 0.99 6.40 -2.38 -0.02 0.98 16 40 H 0.08 0.41 6.96 -2.39 -0.02 0.39 16 41 H 0.10 1.01 7.93 -2.39 -0.02 1.00 16 42 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 43 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 44 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -80.07 381.34 0.66 -79.42 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.28 Total: 17.32 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 6.62 Total: -5.14 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -7.83 Total: -99.66 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.78 Total: -1.67 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -80.07 0.66 -79.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329386361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.712 kcal (2) G-P(sol) polarization free energy of solvation -80.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds