Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47174 * 210.24474 * 3 2 1 5 5 N 1.46504 * 109.47243 * 185.43839 * 4 3 2 6 6 C 1.46507 * 119.99710 * 278.09995 * 5 4 3 7 7 C 1.50696 * 109.47097 * 270.00215 * 6 5 4 8 8 H 1.08001 * 120.00149 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99617 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00337 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99933 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47228 * 59.99350 * 11 9 7 13 13 H 1.48498 * 109.47244 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46832 * 299.99453 * 11 9 7 15 15 C 1.34768 * 120.00274 * 98.10440 * 5 4 3 16 16 O 1.21553 * 120.00320 * 185.88147 * 15 5 4 17 17 C 1.47867 * 119.99973 * 5.88216 * 15 5 4 18 18 C 1.39620 * 120.10719 * 314.44267 * 17 15 5 19 19 C 1.37984 * 120.00352 * 180.02562 * 18 17 15 20 20 C 1.38251 * 120.22172 * 359.74137 * 19 18 17 21 21 C 1.38969 * 120.22174 * 0.51541 * 20 19 18 22 22 N 1.39844 * 120.00326 * 179.77054 * 21 20 19 23 23 N 1.40517 * 127.47680 * 224.69954 * 22 21 20 24 24 H 0.96992 * 125.99512 * 0.04980 * 23 22 21 25 25 N 1.28617 * 108.00130 * 180.02562 * 23 22 21 26 26 N 1.28378 * 111.47341 * 359.97438 * 25 23 22 27 27 C 1.36476 * 109.66684 * 0.02562 * 26 25 23 28 28 N 1.30578 * 127.09113 * 180.02562 * 27 26 25 29 29 C 1.38671 * 119.99412 * 359.48431 * 21 20 19 30 30 H 1.08997 * 109.47164 * 90.24372 * 3 2 1 31 31 H 1.09003 * 109.47501 * 330.24346 * 3 2 1 32 32 H 1.09007 * 109.47539 * 65.43738 * 4 3 2 33 33 H 1.09003 * 109.47363 * 305.43853 * 4 3 2 34 34 H 1.09002 * 109.46893 * 30.00474 * 6 5 4 35 35 H 1.08997 * 109.46612 * 149.99716 * 6 5 4 36 36 H 0.96999 * 120.00730 * 180.02562 * 10 9 7 37 37 H 1.08011 * 120.00048 * 0.04310 * 18 17 15 38 38 H 1.08002 * 119.88453 * 180.02562 * 19 18 17 39 39 H 1.08002 * 119.88770 * 180.27847 * 20 19 18 40 40 H 0.97007 * 120.00175 * 359.96506 * 28 27 26 41 41 H 1.07993 * 120.10983 * 180.27385 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.2470 0.7266 5 7 4.5766 1.3154 0.6145 6 6 5.4185 0.5340 1.5239 7 6 5.7265 1.3523 2.7513 8 1 5.3347 2.3545 2.8444 9 6 6.5093 0.8221 3.7548 10 7 6.9868 -0.3980 3.6411 11 14 6.8905 1.8362 5.2766 12 1 5.6232 2.1957 5.9621 13 1 7.7440 1.0441 6.1982 14 1 7.6071 3.0747 4.8792 15 6 5.1444 2.0972 -0.3250 16 8 6.3486 2.0730 -0.4892 17 6 4.3026 2.9844 -1.1561 18 6 3.1226 2.5001 -1.7239 19 6 2.3390 3.3297 -2.4995 20 6 2.7151 4.6428 -2.7130 21 6 3.8905 5.1331 -2.1567 22 7 4.2690 6.4607 -2.3795 23 7 5.5458 6.9406 -2.7172 24 1 6.3426 6.4018 -2.8418 25 7 5.4721 8.2195 -2.8324 26 7 4.2815 8.6437 -2.6079 27 6 3.4658 7.5895 -2.3150 28 7 2.1916 7.6343 -2.0329 29 6 4.6849 4.3073 -1.3756 30 1 2.9713 0.0052 -1.0276 31 1 2.9718 -0.8913 0.5100 32 1 2.8359 1.1951 1.7784 33 1 2.6764 2.1361 0.2759 34 1 4.8920 -0.3748 1.8158 35 1 6.3485 0.2693 1.0208 36 1 7.5372 -0.7712 4.3472 37 1 2.8230 1.4761 -1.5559 38 1 1.4264 2.9532 -2.9375 39 1 2.0954 5.2887 -3.3173 40 1 1.7281 8.4863 -2.0165 41 1 5.5963 4.6876 -0.9388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361840798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = 197.413806 kcal Electronic energy + Delta-G solvation = -28670.419828 eV Core-core repulsion = 24590.820397 eV Total energy + Delta-G solvation = -4079.599432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.18349 -40.41380 -38.51832 -37.03505 -35.60498 -35.42333 -34.87188 -33.02775 -31.58039 -31.40973 -31.05148 -29.78149 -27.51018 -25.15049 -24.57945 -24.05272 -23.41819 -22.39593 -21.82485 -20.04248 -18.93192 -17.97932 -17.57049 -17.04002 -17.01634 -16.52539 -16.32870 -16.07600 -15.69751 -15.12302 -14.82194 -14.46728 -14.34370 -14.08393 -13.70711 -13.60735 -13.27037 -12.92538 -12.68467 -12.61048 -12.42029 -12.33395 -12.21086 -11.96093 -11.85605 -11.71038 -11.44446 -11.33563 -11.03708 -10.99563 -10.71103 -10.29624 -10.00375 -9.85265 -9.43715 -9.33713 -9.12491 -8.56094 -8.08230 -8.02455 -6.18448 -4.23956 0.27362 0.55962 0.82157 1.00339 2.52306 2.63798 2.73171 2.97294 3.04589 3.24406 3.29436 3.31111 3.40808 3.60266 4.04557 4.16229 4.32319 4.42166 4.45752 4.54051 4.72116 4.76583 4.87027 4.95635 5.02698 5.16644 5.19227 5.33412 5.44374 5.57278 5.72029 5.89841 5.97202 6.04809 6.08931 6.11082 6.35791 6.78802 6.84084 7.19463 7.27989 7.49256 7.54129 7.76824 8.03067 8.03496 8.05652 8.60727 8.81890 9.42188 10.89581 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.003604 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.363784 B = 7766.327863 C = 9773.645379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.213 3.787 3 C -0.056 4.056 4 C 0.104 3.896 5 N -0.585 5.585 6 C 0.244 3.756 7 C -0.535 4.535 8 H 0.058 0.942 9 C 0.066 3.934 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.551 3.449 16 O -0.525 6.525 17 C -0.093 4.093 18 C -0.102 4.102 19 C -0.102 4.102 20 C -0.080 4.080 21 C 0.158 3.842 22 N -0.394 5.394 23 N -0.311 5.311 24 H 0.478 0.522 25 N 0.118 4.882 26 N -0.336 5.336 27 C 0.505 3.495 28 N -0.713 5.713 29 C -0.082 4.082 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.266 0.734 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.364 0.636 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 7.619 -14.421 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.105 4.105 3 C -0.097 4.097 4 C -0.022 4.022 5 N -0.315 5.315 6 C 0.126 3.874 7 C -0.574 4.574 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.530 5.530 11 Si 0.724 3.276 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.337 3.663 16 O -0.402 6.402 17 C -0.097 4.097 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.102 4.102 21 C 0.066 3.934 22 N -0.205 5.205 23 N -0.162 5.162 24 H 0.336 0.664 25 N 0.121 4.879 26 N -0.236 5.236 27 C 0.134 3.866 28 N -0.360 5.360 29 C -0.104 4.104 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.184 0.816 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.138 7.731 -14.350 17.794 hybrid contribution 0.991 0.282 1.028 1.455 sum -6.147 8.012 -13.322 16.717 Atomic orbital electron populations 1.81228 1.12857 1.08556 1.08739 1.29000 0.94993 0.93285 0.93231 1.20001 0.81654 1.03620 1.04410 1.21606 0.82153 0.95853 1.02585 1.48132 1.05614 1.44783 1.32979 1.19433 0.90545 0.90297 0.87163 1.21360 1.32380 1.01066 1.02552 0.92357 1.24891 0.95303 0.95031 0.98490 1.69894 1.34333 1.14647 1.34123 0.86581 0.78455 0.80195 0.82363 1.20137 1.21086 1.20200 1.18072 0.87357 0.80522 0.80333 1.90791 1.14197 1.66825 1.68397 1.20020 0.95838 0.94093 0.99754 1.21919 0.92856 1.01352 0.95995 1.20991 1.00111 0.92479 0.98495 1.21107 0.95579 0.95520 0.98019 1.17004 0.97278 0.78993 1.00117 1.45276 0.99629 1.05339 1.70304 1.48205 1.03425 1.04130 1.60435 0.66436 1.77620 1.16621 0.91582 1.02067 1.77234 0.95802 1.23272 1.27251 1.21360 0.91445 0.79884 0.93932 1.69542 1.00862 1.35294 1.30311 1.21008 1.00457 0.93007 0.95935 0.87129 0.85896 0.88556 0.89570 0.94307 0.93179 0.92474 0.83978 0.84345 0.84459 0.81584 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.96 18.54 42.15 0.78 -5.18 16 2 C 0.21 2.36 15.38 -20.76 -0.32 2.04 16 3 C -0.06 -0.54 5.10 -29.52 -0.15 -0.69 16 4 C 0.10 1.33 4.83 -4.04 -0.02 1.31 16 5 N -0.58 -10.12 2.46 -176.16 -0.43 -10.55 16 6 C 0.24 5.45 5.22 -5.19 -0.03 5.42 16 7 C -0.53 -13.70 9.39 -34.44 -0.32 -14.02 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -24.51 13.28 55.43 0.74 -23.77 16 11 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.55 9.68 7.27 -12.32 -0.09 9.59 16 16 O -0.53 -11.40 16.54 5.32 0.09 -11.31 16 17 C -0.09 -1.24 5.09 -104.99 -0.53 -1.78 16 18 C -0.10 -1.06 7.40 -39.16 -0.29 -1.35 16 19 C -0.10 -0.93 10.02 -39.67 -0.40 -1.33 16 20 C -0.08 -0.83 9.34 -39.31 -0.37 -1.19 16 21 C 0.16 1.80 6.33 -83.77 -0.53 1.26 16 22 N -0.39 -4.38 3.81 -11.12 -0.04 -4.43 16 23 N -0.31 -2.63 8.21 60.35 0.50 -2.14 16 24 H 0.48 2.34 8.96 -331.83 -2.97 -0.64 16 25 N 0.12 1.17 13.30 60.35 0.80 1.97 16 26 N -0.34 -4.03 12.46 30.22 0.38 -3.66 16 27 C 0.50 6.30 9.04 -319.48 -2.89 3.41 16 28 N -0.71 -9.00 13.47 30.23 0.41 -8.59 16 29 C -0.08 -1.03 9.56 -38.97 -0.37 -1.41 16 30 H 0.11 0.85 6.19 -51.93 -0.32 0.53 16 31 H 0.12 1.15 8.06 -51.93 -0.42 0.73 16 32 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 33 H 0.09 0.99 5.03 -51.93 -0.26 0.73 16 34 H 0.04 0.85 7.99 -51.93 -0.42 0.43 16 35 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.14 1.24 3.64 -52.48 -0.19 1.05 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.14 1.36 7.77 -52.49 -0.41 0.96 16 40 H 0.36 4.02 8.92 -40.82 -0.36 3.65 16 41 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -33.54 366.65 -9.24 -42.77 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.55 Total: 0.83 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -6.41 Total: 2.92 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 3.12 Total: -56.35 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.54 -9.24 -42.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361840798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.188 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds