Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47174 * 210.24474 * 3 2 1 5 5 N 1.46504 * 109.47243 * 185.43839 * 4 3 2 6 6 C 1.46507 * 119.99710 * 278.09995 * 5 4 3 7 7 C 1.50696 * 109.47097 * 270.00215 * 6 5 4 8 8 H 1.08001 * 120.00149 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99617 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00337 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99933 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47228 * 59.99350 * 11 9 7 13 13 H 1.48498 * 109.47244 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46832 * 299.99453 * 11 9 7 15 15 C 1.34768 * 120.00274 * 98.10440 * 5 4 3 16 16 O 1.21553 * 120.00320 * 185.88147 * 15 5 4 17 17 C 1.47867 * 119.99973 * 5.88216 * 15 5 4 18 18 C 1.39620 * 120.10719 * 314.44267 * 17 15 5 19 19 C 1.37984 * 120.00352 * 180.02562 * 18 17 15 20 20 C 1.38251 * 120.22172 * 359.74137 * 19 18 17 21 21 C 1.38969 * 120.22174 * 0.51541 * 20 19 18 22 22 N 1.39844 * 120.00326 * 179.77054 * 21 20 19 23 23 N 1.40517 * 127.47680 * 224.69954 * 22 21 20 24 24 H 0.96992 * 125.99512 * 0.04980 * 23 22 21 25 25 N 1.28617 * 108.00130 * 180.02562 * 23 22 21 26 26 N 1.28378 * 111.47341 * 359.97438 * 25 23 22 27 27 C 1.36476 * 109.66684 * 0.02562 * 26 25 23 28 28 N 1.30578 * 127.09113 * 180.02562 * 27 26 25 29 29 C 1.38671 * 119.99412 * 359.48431 * 21 20 19 30 30 H 1.08997 * 109.47164 * 90.24372 * 3 2 1 31 31 H 1.09003 * 109.47501 * 330.24346 * 3 2 1 32 32 H 1.09007 * 109.47539 * 65.43738 * 4 3 2 33 33 H 1.09003 * 109.47363 * 305.43853 * 4 3 2 34 34 H 1.09002 * 109.46893 * 30.00474 * 6 5 4 35 35 H 1.08997 * 109.46612 * 149.99716 * 6 5 4 36 36 H 0.96999 * 120.00730 * 180.02562 * 10 9 7 37 37 H 1.08011 * 120.00048 * 0.04310 * 18 17 15 38 38 H 1.08002 * 119.88453 * 180.02562 * 19 18 17 39 39 H 1.08002 * 119.88770 * 180.27847 * 20 19 18 40 40 H 0.97007 * 120.00175 * 359.96506 * 28 27 26 41 41 H 1.07993 * 120.10983 * 180.27385 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.2470 0.7266 5 7 4.5766 1.3154 0.6145 6 6 5.4185 0.5340 1.5239 7 6 5.7265 1.3523 2.7513 8 1 5.3347 2.3545 2.8444 9 6 6.5093 0.8221 3.7548 10 7 6.9868 -0.3980 3.6411 11 14 6.8905 1.8362 5.2766 12 1 5.6232 2.1957 5.9621 13 1 7.7440 1.0441 6.1982 14 1 7.6071 3.0747 4.8792 15 6 5.1444 2.0972 -0.3250 16 8 6.3486 2.0730 -0.4892 17 6 4.3026 2.9844 -1.1561 18 6 3.1226 2.5001 -1.7239 19 6 2.3390 3.3297 -2.4995 20 6 2.7151 4.6428 -2.7130 21 6 3.8905 5.1331 -2.1567 22 7 4.2690 6.4607 -2.3795 23 7 5.5458 6.9406 -2.7172 24 1 6.3426 6.4018 -2.8418 25 7 5.4721 8.2195 -2.8324 26 7 4.2815 8.6437 -2.6079 27 6 3.4658 7.5895 -2.3150 28 7 2.1916 7.6343 -2.0329 29 6 4.6849 4.3073 -1.3756 30 1 2.9713 0.0052 -1.0276 31 1 2.9718 -0.8913 0.5100 32 1 2.8359 1.1951 1.7784 33 1 2.6764 2.1361 0.2759 34 1 4.8920 -0.3748 1.8158 35 1 6.3485 0.2693 1.0208 36 1 7.5372 -0.7712 4.3472 37 1 2.8230 1.4761 -1.5559 38 1 1.4264 2.9532 -2.9375 39 1 2.0954 5.2887 -3.3173 40 1 1.7281 8.4863 -2.0165 41 1 5.5963 4.6876 -0.9388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361840798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = 177.125452 kcal Electronic energy + Delta-G solvation = -28671.299597 eV Core-core repulsion = 24590.820397 eV Total energy + Delta-G solvation = -4080.479201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.03305 -41.55464 -39.63949 -38.11300 -36.79054 -36.43973 -35.77465 -34.85058 -32.59565 -32.37057 -32.19629 -30.69346 -29.19757 -26.09965 -25.70971 -25.38664 -24.49722 -23.46411 -22.85209 -21.01869 -20.01266 -19.04753 -18.64387 -18.36523 -17.95632 -17.87699 -17.30020 -17.21829 -16.96608 -16.36799 -16.10980 -15.71992 -15.50637 -15.05068 -14.79292 -14.55844 -14.36748 -14.29265 -13.89781 -13.68909 -13.59650 -13.29226 -13.23472 -13.16646 -13.02673 -12.89011 -12.78402 -12.57915 -12.52404 -12.27405 -12.14902 -11.91283 -11.70750 -10.95001 -10.79765 -10.59090 -10.18965 -10.10928 -9.55985 -8.96440 -8.19567 -6.31433 -0.56940 -0.24209 -0.12538 0.14896 1.40287 1.41753 1.48532 1.59450 1.67168 1.79096 1.84518 2.09070 2.36181 2.43472 2.61230 3.04248 3.13253 3.29316 3.44657 3.61534 3.61796 3.79772 3.90968 3.97777 4.04359 4.05142 4.33548 4.47092 4.56713 4.71052 4.79627 4.97061 5.03882 5.13708 5.19694 5.23296 5.29540 5.34216 5.54554 5.59843 5.83170 6.04243 6.10518 6.58694 6.62770 6.68940 6.77250 7.16916 7.22979 7.41185 8.87002 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.003604 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.363784 B = 7766.327863 C = 9773.645379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.242 3.758 3 C -0.045 4.045 4 C 0.101 3.899 5 N -0.585 5.585 6 C 0.259 3.741 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.018 3.982 10 N -0.921 5.921 11 Si 0.952 3.048 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.549 3.451 16 O -0.578 6.578 17 C -0.107 4.107 18 C -0.092 4.092 19 C -0.086 4.086 20 C -0.075 4.075 21 C 0.154 3.846 22 N -0.397 5.397 23 N -0.288 5.288 24 H 0.492 0.508 25 N 0.125 4.875 26 N -0.359 5.359 27 C 0.498 3.502 28 N -0.728 5.728 29 C -0.089 4.089 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.044 0.956 35 H 0.011 0.989 36 H 0.267 0.733 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.146 0.854 40 H 0.368 0.632 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.645 7.882 -15.343 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.076 4.076 3 C -0.086 4.086 4 C -0.023 4.023 5 N -0.314 5.314 6 C 0.138 3.862 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.182 4.182 10 N -0.561 5.561 11 Si 0.778 3.222 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.338 3.662 16 O -0.459 6.459 17 C -0.111 4.111 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.096 4.096 21 C 0.063 3.937 22 N -0.208 5.208 23 N -0.143 5.143 24 H 0.353 0.647 25 N 0.129 4.871 26 N -0.258 5.258 27 C 0.127 3.873 28 N -0.376 5.376 29 C -0.111 4.111 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.178 0.822 38 H 0.192 0.808 39 H 0.163 0.837 40 H 0.189 0.811 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.789 7.996 -15.281 19.357 hybrid contribution 1.537 0.211 1.262 2.000 sum -7.252 8.207 -14.019 17.790 Atomic orbital electron populations 1.81276 1.14034 1.09808 1.10232 1.28936 0.94701 0.92038 0.91886 1.19935 0.80701 1.02200 1.05733 1.21787 0.79320 0.98235 1.02995 1.47978 1.07151 1.44235 1.32062 1.18916 0.90024 0.90700 0.86555 1.21699 1.32030 1.01000 1.03698 0.93050 1.25618 0.95369 0.95978 1.01193 1.69986 1.35135 1.15934 1.34999 0.85704 0.78546 0.78562 0.79426 1.19035 1.20602 1.20640 1.18679 0.87150 0.80211 0.80178 1.90755 1.16741 1.68280 1.70085 1.19632 0.96860 0.93694 1.00908 1.22069 0.91448 1.02289 0.95221 1.21333 1.00585 0.91494 0.97051 1.21343 0.94788 0.96190 0.97311 1.17024 0.97613 0.78860 1.00243 1.45355 1.00246 1.05203 1.70038 1.48327 1.03262 1.03969 1.58734 0.64675 1.77578 1.16081 0.91915 1.01548 1.77247 0.96233 1.23368 1.28961 1.21520 0.91712 0.80226 0.93889 1.69515 1.01134 1.35800 1.31165 1.20898 1.00522 0.93121 0.96564 0.84347 0.85146 0.89384 0.87779 0.93779 0.97038 0.92441 0.82222 0.80832 0.83675 0.81103 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.87 18.54 20.01 0.37 -11.50 16 2 C 0.24 4.66 15.38 89.44 1.38 6.04 16 3 C -0.05 -0.75 5.10 28.79 0.15 -0.60 16 4 C 0.10 2.40 4.83 86.38 0.42 2.82 16 5 N -0.59 -20.11 2.46 -829.52 -2.04 -22.16 16 6 C 0.26 11.79 5.22 85.63 0.45 12.23 16 7 C -0.55 -28.36 9.39 25.60 0.24 -28.12 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 9 C 0.02 0.98 5.46 84.66 0.46 1.44 16 10 N -0.92 -51.37 13.28 21.45 0.28 -51.09 16 11 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 C 0.55 19.37 7.27 86.79 0.63 20.01 16 16 O -0.58 -26.03 16.54 -3.88 -0.06 -26.10 16 17 C -0.11 -2.72 5.09 -20.10 -0.10 -2.82 16 18 C -0.09 -1.60 7.40 22.54 0.17 -1.43 16 19 C -0.09 -1.21 10.02 22.21 0.22 -0.99 16 20 C -0.07 -1.30 9.34 22.45 0.21 -1.09 16 21 C 0.15 3.24 6.33 38.14 0.24 3.48 16 22 N -0.40 -8.30 3.81 -189.10 -0.72 -9.02 16 23 N -0.29 -4.55 8.21 37.02 0.30 -4.24 16 24 H 0.49 4.27 8.96 -340.27 -3.05 1.22 16 25 N 0.13 2.35 13.30 37.02 0.49 2.85 16 26 N -0.36 -8.31 12.46 -58.31 -0.73 -9.04 16 27 C 0.50 11.85 9.04 260.33 2.35 14.21 16 28 N -0.73 -17.49 13.47 -58.27 -0.78 -18.27 16 29 C -0.09 -2.17 9.56 22.66 0.22 -1.95 16 30 H 0.14 1.60 6.19 -2.39 -0.01 1.58 16 31 H 0.13 2.11 8.06 -2.39 -0.02 2.10 16 32 H 0.09 2.28 8.13 -2.38 -0.02 2.26 16 33 H 0.10 2.13 5.03 -2.39 -0.01 2.12 16 34 H 0.04 1.95 7.99 -2.39 -0.02 1.93 16 35 H 0.01 0.61 7.35 -2.39 -0.02 0.60 16 36 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.16 2.15 3.64 -2.90 -0.01 2.14 16 38 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.15 2.41 7.77 -2.91 -0.02 2.39 16 40 H 0.37 7.85 8.92 -92.70 -0.83 7.02 16 41 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -74.44 366.65 3.44 -71.01 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -2.73 Total: 9.87 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 7.03 Total: 23.22 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -2.82 Total: -122.46 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.10 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -74.44 3.44 -71.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361840798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.133 kcal (2) G-P(sol) polarization free energy of solvation -74.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds