Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35997 * 117.00272 * 2 1 4 4 C 1.38572 * 120.06887 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99401 * 180.02562 * 4 3 2 6 6 C 1.38250 * 120.15216 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.14368 * 0.02562 * 6 5 4 8 8 C 1.38564 * 119.99968 * 359.71980 * 7 6 5 9 9 O 1.35991 * 120.07574 * 180.27338 * 8 7 6 10 10 C 1.42900 * 116.99913 * 0.28325 * 9 8 7 11 11 C 1.50697 * 109.47355 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99951 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00043 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99865 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47381 * 180.02562 * 14 13 11 16 16 C 1.38638 * 119.74651 * 269.73340 * 15 14 13 17 17 C 1.37622 * 120.24307 * 179.71895 * 16 15 14 18 18 C 1.40705 * 119.74472 * 0.56671 * 17 16 15 19 19 C 1.41406 * 120.24382 * 179.68422 * 18 17 16 20 20 H 1.08003 * 119.99877 * 204.40502 * 19 18 17 21 21 C 1.39939 * 119.99948 * 24.39942 * 19 18 17 22 22 N 1.30823 * 120.00065 * 17.85860 * 21 19 18 23 23 Si 1.86802 * 120.00153 * 197.85969 * 21 19 18 24 24 H 1.48496 * 109.46879 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47000 * 120.00107 * 23 21 19 26 26 H 1.48501 * 109.47137 * 240.00296 * 23 21 19 27 27 C 1.40714 * 119.51515 * 359.70418 * 18 17 16 28 28 C 1.37617 * 119.74449 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47302 * 300.00189 * 1 2 3 31 31 H 1.09003 * 109.47175 * 59.99532 * 1 2 3 32 32 H 1.07991 * 120.00455 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.92145 * 179.97438 * 5 4 3 34 34 H 1.07999 * 119.92583 * 179.97438 * 6 5 4 35 35 H 1.07994 * 119.99788 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.46788 * 299.99440 * 10 9 8 37 37 H 1.09000 * 109.47402 * 59.99567 * 10 9 8 38 38 H 0.97002 * 120.00195 * 359.97438 * 13 11 10 39 39 H 1.08997 * 109.47309 * 300.00332 * 14 13 11 40 40 H 1.09006 * 109.47219 * 59.99870 * 14 13 11 41 41 H 1.08000 * 119.87857 * 359.97076 * 16 15 14 42 42 H 1.08001 * 120.12081 * 180.27793 * 17 16 15 43 43 H 0.97002 * 120.00174 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.12933 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.87645 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3029 3.6799 -0.0005 7 6 4.0603 2.5233 -0.0011 8 6 3.4360 1.2863 0.0048 9 8 4.1795 0.1477 0.0099 10 6 5.6002 0.3006 0.0151 11 6 6.2518 -1.0582 0.0209 12 8 5.5669 -2.0591 0.0211 13 7 7.5956 -1.1612 0.0260 14 6 8.2289 -2.4822 0.0322 15 6 9.7273 -2.3209 0.0376 16 6 10.4166 -2.2563 -1.1636 17 6 11.7842 -2.1033 -1.1706 18 6 12.4841 -2.0245 0.0475 19 6 13.8902 -1.8740 0.0526 20 1 14.4649 -2.1985 0.9075 21 6 14.5369 -1.3049 -1.0501 22 7 13.8547 -0.6031 -1.9182 23 14 16.3745 -1.5472 -1.2827 24 1 16.9093 -2.3743 -0.1714 25 1 16.6234 -2.2349 -2.5751 26 1 17.0515 -0.2254 -1.2869 27 6 11.7747 -2.0970 1.2606 28 6 10.4066 -2.2444 1.2437 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2146 2.3197 0.0005 33 1 1.3342 4.5115 0.0000 34 1 3.7907 4.6434 -0.0014 35 1 5.1385 2.5840 -0.0019 36 1 5.9099 0.8486 -0.8748 37 1 5.9030 0.8522 0.9052 38 1 8.1434 -0.3607 0.0255 39 1 7.9195 -3.0293 0.9227 40 1 7.9258 -3.0347 -0.8572 41 1 9.8778 -2.3221 -2.0972 42 1 12.3187 -2.0487 -2.1075 43 1 14.3030 -0.2082 -2.6824 44 1 12.3020 -2.0380 2.2013 45 1 9.8601 -2.3007 2.1734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361889552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = -66.370338 kcal Electronic energy + Delta-G solvation = -27380.037181 eV Core-core repulsion = 23327.954052 eV Total energy + Delta-G solvation = -4052.083129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.80546 -39.56345 -38.39188 -37.65609 -36.93932 -34.74616 -33.47753 -30.96041 -30.59292 -30.29164 -29.41039 -28.47064 -27.44655 -26.48251 -23.74668 -22.53084 -22.42453 -21.11720 -20.29980 -20.12716 -18.95547 -17.53552 -17.42936 -17.26858 -16.54894 -16.30867 -15.79156 -15.61403 -15.38336 -15.01277 -14.84648 -14.56044 -14.43227 -14.05128 -13.69806 -13.64750 -13.27971 -12.82911 -12.74503 -12.55680 -12.40928 -12.07813 -11.99346 -11.73431 -11.56481 -11.39789 -11.37470 -11.24431 -11.18285 -11.06910 -10.76061 -10.48396 -9.83194 -9.63773 -9.51902 -9.25800 -9.03251 -8.72923 -8.05062 -7.61207 -7.49230 -6.90878 -4.50157 1.00158 1.18244 2.39798 2.73818 2.75399 2.94821 3.00273 3.04852 3.05000 3.08250 3.46497 3.81562 3.83970 4.46597 4.52533 4.61518 4.68111 4.82084 4.89591 4.91264 4.94620 4.96177 5.09883 5.15475 5.24567 5.36734 5.56136 5.76925 5.87456 5.89054 5.98680 6.19928 6.21191 6.25673 6.31286 6.38664 6.72104 6.83392 6.84169 6.94139 7.14447 7.22735 7.35348 7.47572 7.64312 7.84025 7.92338 7.97684 8.15643 8.41335 8.50434 8.75239 8.82743 10.03061 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.001757 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.366629 B =15935.083565 C =16754.059047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.302 6.302 3 C 0.101 3.899 4 C -0.175 4.175 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.176 4.176 8 C 0.103 3.897 9 O -0.278 6.278 10 C 0.038 3.962 11 C 0.509 3.491 12 O -0.527 6.527 13 N -0.714 5.714 14 C 0.187 3.813 15 C -0.247 4.247 16 C -0.081 4.081 17 C -0.169 4.169 18 C 0.116 3.884 19 C -0.457 4.457 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.787 5.787 23 Si 0.909 3.091 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.229 4.229 28 C -0.069 4.069 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.402 0.598 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.282 0.718 44 H 0.093 0.907 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.388 9.178 1.471 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.055 3.945 4 C -0.193 4.193 5 C -0.139 4.139 6 C -0.134 4.134 7 C -0.194 4.194 8 C 0.057 3.943 9 O -0.190 6.190 10 C -0.041 4.041 11 C 0.293 3.707 12 O -0.403 6.403 13 N -0.367 5.367 14 C 0.065 3.935 15 C -0.248 4.248 16 C -0.100 4.100 17 C -0.189 4.189 18 C 0.113 3.887 19 C -0.486 4.486 20 H 0.098 0.902 21 C -0.143 4.143 22 N -0.412 5.412 23 Si 0.733 3.267 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.249 4.249 28 C -0.088 4.088 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.236 0.764 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.837 8.164 1.258 21.488 hybrid contribution 1.075 0.844 -0.198 1.381 sum -18.763 9.008 1.060 20.840 Atomic orbital electron populations 1.23070 0.78703 1.04106 1.00979 1.86262 1.20871 1.25660 1.88753 1.18287 0.89106 0.85414 1.01710 1.21067 0.99912 0.91529 1.06832 1.20849 0.94615 0.96939 1.01483 1.20876 0.93729 0.97895 1.00933 1.21162 1.00713 0.91074 1.06480 1.18350 0.88419 0.86121 1.01404 1.86275 1.16631 1.27491 1.88587 1.22575 0.80454 0.97370 1.03684 1.19983 0.83062 0.89988 0.77713 1.90732 1.62950 1.38003 1.48609 1.46411 1.04976 1.11104 1.74176 1.19983 0.90175 0.82370 1.00932 1.18968 0.92000 1.20014 0.93864 1.20571 0.94728 0.99452 0.95224 1.21316 0.92693 1.06096 0.98767 1.17687 0.93209 0.86810 0.90964 1.19703 0.92214 1.34829 1.01828 0.90195 1.25956 1.01130 0.92524 0.94729 1.69821 1.38525 1.22164 1.10661 0.86249 0.81895 0.79099 0.79477 1.18287 1.19584 1.19898 1.20978 0.93236 1.13601 0.97089 1.20415 0.94315 0.98792 0.95293 0.88127 0.92800 0.92802 0.84826 0.85630 0.85449 0.84515 0.89057 0.89095 0.76352 0.92218 0.92159 0.89337 0.86342 0.90722 0.88865 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.92 10.28 -34.23 -0.35 -4.27 16 3 C 0.10 1.24 6.70 -39.12 -0.26 0.97 16 4 C -0.17 -1.61 9.04 -39.46 -0.36 -1.96 16 5 C -0.12 -0.99 10.04 -39.57 -0.40 -1.38 16 6 C -0.12 -0.99 10.04 -39.57 -0.40 -1.39 16 7 C -0.18 -1.77 9.04 -39.46 -0.36 -2.13 16 8 C 0.10 1.33 6.70 -39.12 -0.26 1.07 16 9 O -0.28 -4.23 9.45 -47.34 -0.45 -4.68 16 10 C 0.04 0.47 5.22 36.00 0.19 0.66 16 11 C 0.51 8.17 7.91 -10.99 -0.09 8.08 16 12 O -0.53 -10.79 16.50 -14.35 -0.24 -11.03 16 13 N -0.71 -11.02 5.55 -61.47 -0.34 -11.36 16 14 C 0.19 3.31 5.79 -5.19 -0.03 3.28 16 15 C -0.25 -4.97 5.27 -104.33 -0.55 -5.52 16 16 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 17 C -0.17 -4.15 8.70 -38.88 -0.34 -4.48 16 18 C 0.12 2.93 5.57 -106.83 -0.60 2.33 16 19 C -0.46 -11.54 9.05 -37.74 -0.34 -11.88 16 20 H 0.08 1.95 7.91 -52.48 -0.42 1.53 16 21 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 22 N -0.79 -19.28 10.95 55.55 0.61 -18.67 16 23 Si 0.91 17.79 29.60 -169.99 -5.03 12.76 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.23 -5.30 9.80 -38.87 -0.38 -5.68 16 28 C -0.07 -1.44 9.67 -39.66 -0.38 -1.83 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 31 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 32 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 36 H 0.09 0.90 7.65 -51.93 -0.40 0.50 16 37 H 0.09 0.88 7.68 -51.93 -0.40 0.48 16 38 H 0.40 5.50 8.46 -40.82 -0.35 5.15 16 39 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.12 3.02 6.16 -52.49 -0.32 2.69 16 43 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 44 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 45 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -31.22 385.47 -9.87 -41.09 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.85 Total: 9.43 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -4.03 Total: -19.08 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.27 Total: -30.03 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.04 Total: -19.98 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.22 -9.87 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361889552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.280 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds