Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35997 * 117.00272 * 2 1 4 4 C 1.38572 * 120.06887 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99401 * 180.02562 * 4 3 2 6 6 C 1.38250 * 120.15216 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.14368 * 0.02562 * 6 5 4 8 8 C 1.38564 * 119.99968 * 359.71980 * 7 6 5 9 9 O 1.35991 * 120.07574 * 180.27338 * 8 7 6 10 10 C 1.42900 * 116.99913 * 0.28325 * 9 8 7 11 11 C 1.50697 * 109.47355 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99951 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00043 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99865 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47381 * 180.02562 * 14 13 11 16 16 C 1.38638 * 119.74651 * 269.73340 * 15 14 13 17 17 C 1.37622 * 120.24307 * 179.71895 * 16 15 14 18 18 C 1.40705 * 119.74472 * 0.56671 * 17 16 15 19 19 C 1.41406 * 120.24382 * 179.68422 * 18 17 16 20 20 H 1.08003 * 119.99877 * 204.40502 * 19 18 17 21 21 C 1.39939 * 119.99948 * 24.39942 * 19 18 17 22 22 N 1.30823 * 120.00065 * 17.85860 * 21 19 18 23 23 Si 1.86802 * 120.00153 * 197.85969 * 21 19 18 24 24 H 1.48496 * 109.46879 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47000 * 120.00107 * 23 21 19 26 26 H 1.48501 * 109.47137 * 240.00296 * 23 21 19 27 27 C 1.40714 * 119.51515 * 359.70418 * 18 17 16 28 28 C 1.37617 * 119.74449 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47302 * 300.00189 * 1 2 3 31 31 H 1.09003 * 109.47175 * 59.99532 * 1 2 3 32 32 H 1.07991 * 120.00455 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.92145 * 179.97438 * 5 4 3 34 34 H 1.07999 * 119.92583 * 179.97438 * 6 5 4 35 35 H 1.07994 * 119.99788 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.46788 * 299.99440 * 10 9 8 37 37 H 1.09000 * 109.47402 * 59.99567 * 10 9 8 38 38 H 0.97002 * 120.00195 * 359.97438 * 13 11 10 39 39 H 1.08997 * 109.47309 * 300.00332 * 14 13 11 40 40 H 1.09006 * 109.47219 * 59.99870 * 14 13 11 41 41 H 1.08000 * 119.87857 * 359.97076 * 16 15 14 42 42 H 1.08001 * 120.12081 * 180.27793 * 17 16 15 43 43 H 0.97002 * 120.00174 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.12933 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.87645 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3029 3.6799 -0.0005 7 6 4.0603 2.5233 -0.0011 8 6 3.4360 1.2863 0.0048 9 8 4.1795 0.1477 0.0099 10 6 5.6002 0.3006 0.0151 11 6 6.2518 -1.0582 0.0209 12 8 5.5669 -2.0591 0.0211 13 7 7.5956 -1.1612 0.0260 14 6 8.2289 -2.4822 0.0322 15 6 9.7273 -2.3209 0.0376 16 6 10.4166 -2.2563 -1.1636 17 6 11.7842 -2.1033 -1.1706 18 6 12.4841 -2.0245 0.0475 19 6 13.8902 -1.8740 0.0526 20 1 14.4649 -2.1985 0.9075 21 6 14.5369 -1.3049 -1.0501 22 7 13.8547 -0.6031 -1.9182 23 14 16.3745 -1.5472 -1.2827 24 1 16.9093 -2.3743 -0.1714 25 1 16.6234 -2.2349 -2.5751 26 1 17.0515 -0.2254 -1.2869 27 6 11.7747 -2.0970 1.2606 28 6 10.4066 -2.2444 1.2437 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2146 2.3197 0.0005 33 1 1.3342 4.5115 0.0000 34 1 3.7907 4.6434 -0.0014 35 1 5.1385 2.5840 -0.0019 36 1 5.9099 0.8486 -0.8748 37 1 5.9030 0.8522 0.9052 38 1 8.1434 -0.3607 0.0255 39 1 7.9195 -3.0293 0.9227 40 1 7.9258 -3.0347 -0.8572 41 1 9.8778 -2.3221 -2.0972 42 1 12.3187 -2.0487 -2.1075 43 1 14.3030 -0.2082 -2.6824 44 1 12.3020 -2.0380 2.2013 45 1 9.8601 -2.3007 2.1734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361889552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = -83.756885 kcal Electronic energy + Delta-G solvation = -27380.791119 eV Core-core repulsion = 23327.954052 eV Total energy + Delta-G solvation = -4052.837067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.63901 -40.75640 -39.58589 -39.11943 -37.73110 -36.33167 -35.11368 -32.37260 -31.37205 -31.28008 -31.15514 -29.66451 -28.07237 -27.97256 -25.32386 -23.28152 -23.25660 -22.89938 -21.84039 -21.51872 -19.76618 -19.24298 -18.45324 -18.29368 -17.51339 -17.25839 -17.17304 -16.76235 -16.60767 -15.93736 -15.84158 -15.66640 -15.60426 -15.51715 -15.15409 -14.99219 -14.37619 -14.20380 -13.83863 -13.76556 -13.60586 -13.48691 -13.34808 -12.99577 -12.83599 -12.71989 -12.51501 -12.28971 -12.13269 -12.09959 -12.02137 -11.98517 -11.52339 -11.30035 -11.11473 -10.93604 -10.11374 -9.72968 -9.40178 -9.29059 -8.83742 -8.67621 -6.37183 0.30715 0.45619 0.80801 1.13503 1.38792 1.43066 1.50111 1.53605 1.70536 2.19849 2.39689 2.60345 2.76581 2.84475 3.60207 3.75290 3.89370 3.97028 4.05445 4.08762 4.13229 4.18653 4.30863 4.32059 4.39048 4.44636 4.50634 4.51614 4.65381 4.71798 4.74507 4.79024 5.04763 5.14453 5.21557 5.34144 5.34927 5.38864 5.43572 5.54620 5.68239 5.75857 5.90291 6.04445 6.08584 6.19604 6.35612 6.51858 6.62957 6.67632 6.91534 7.00035 7.16337 8.28909 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.001757 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.366629 B =15935.083565 C =16754.059047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.072 3.928 4 C -0.174 4.174 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.177 4.177 8 C 0.067 3.933 9 O -0.315 6.315 10 C 0.043 3.957 11 C 0.509 3.491 12 O -0.576 6.576 13 N -0.705 5.705 14 C 0.194 3.806 15 C -0.227 4.227 16 C -0.081 4.081 17 C -0.192 4.192 18 C 0.086 3.914 19 C -0.495 4.495 20 H 0.076 0.924 21 C 0.037 3.963 22 N -0.817 5.817 23 Si 0.980 3.020 24 H -0.259 1.259 25 H -0.265 1.265 26 H -0.265 1.265 27 C -0.243 4.243 28 C -0.067 4.067 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.413 0.587 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.289 0.711 44 H 0.098 0.902 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.436 11.340 1.718 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.027 3.973 4 C -0.192 4.192 5 C -0.134 4.134 6 C -0.136 4.136 7 C -0.195 4.195 8 C 0.022 3.978 9 O -0.229 6.229 10 C -0.035 4.035 11 C 0.296 3.704 12 O -0.456 6.456 13 N -0.358 5.358 14 C 0.072 3.928 15 C -0.229 4.229 16 C -0.100 4.100 17 C -0.211 4.211 18 C 0.083 3.917 19 C -0.524 4.524 20 H 0.094 0.906 21 C -0.179 4.179 22 N -0.443 5.443 23 Si 0.801 3.199 24 H -0.183 1.183 25 H -0.190 1.190 26 H -0.190 1.190 27 C -0.262 4.262 28 C -0.085 4.085 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.250 0.750 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.892 10.362 1.511 23.369 hybrid contribution 1.175 0.217 -0.244 1.220 sum -19.717 10.579 1.267 22.412 Atomic orbital electron populations 1.23323 0.76592 1.05217 1.02413 1.86195 1.23352 1.26848 1.89208 1.18714 0.89473 0.86115 1.02992 1.21392 1.01037 0.90973 1.05848 1.21303 0.94965 0.97613 0.99569 1.21290 0.94088 0.98518 0.99730 1.21444 1.01840 0.90511 1.05723 1.18754 0.88813 0.86385 1.03882 1.86198 1.17679 1.29464 1.89534 1.22613 0.79667 0.94865 1.06334 1.20606 0.82666 0.91041 0.76114 1.90711 1.63932 1.40064 1.50870 1.46150 1.05175 1.10630 1.73796 1.19777 0.88428 0.83604 1.01030 1.19150 0.93231 1.17450 0.93079 1.20760 0.93901 0.98668 0.96679 1.21263 0.93824 1.08044 0.98005 1.18019 0.93862 0.87837 0.91976 1.19918 0.92774 1.36788 1.02926 0.90587 1.26736 1.05520 0.91661 0.93999 1.69858 1.40413 1.22755 1.11264 0.85188 0.76229 0.79209 0.79306 1.18274 1.19005 1.18952 1.21161 0.94345 1.14004 0.96716 1.20687 0.93607 0.97546 0.96706 0.87352 0.91271 0.91311 0.82565 0.82537 0.82686 0.82735 0.86334 0.86146 0.74999 0.91960 0.92467 0.87716 0.88092 0.89988 0.88344 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.05 10.28 -79.65 -0.82 -9.87 16 3 C 0.07 1.75 6.70 22.57 0.15 1.90 16 4 C -0.17 -2.86 9.04 22.35 0.20 -2.66 16 5 C -0.12 -1.53 10.04 22.27 0.22 -1.30 16 6 C -0.12 -1.64 10.04 22.27 0.22 -1.42 16 7 C -0.18 -3.18 9.04 22.35 0.20 -2.98 16 8 C 0.07 1.69 6.70 22.57 0.15 1.84 16 9 O -0.31 -9.63 9.45 -67.04 -0.63 -10.26 16 10 C 0.04 1.00 5.22 71.24 0.37 1.37 16 11 C 0.51 15.92 7.91 87.66 0.69 16.61 16 12 O -0.58 -23.80 16.50 16.01 0.26 -23.54 16 13 N -0.70 -20.60 5.55 -466.79 -2.59 -23.19 16 14 C 0.19 6.61 5.79 85.63 0.50 7.11 16 15 C -0.23 -8.89 5.27 -19.67 -0.10 -8.99 16 16 C -0.08 -3.51 9.67 22.22 0.21 -3.30 16 17 C -0.19 -9.61 8.70 22.73 0.20 -9.42 16 18 C 0.09 4.43 5.57 -21.29 -0.12 4.31 16 19 C -0.50 -25.76 9.05 23.46 0.21 -25.55 16 20 H 0.08 3.84 7.91 -2.91 -0.02 3.82 16 21 C 0.04 1.78 5.14 85.26 0.44 2.22 16 22 N -0.82 -40.89 10.95 21.82 0.24 -40.65 16 23 Si 0.98 36.82 29.60 68.60 2.03 38.85 16 24 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 25 H -0.27 -9.64 7.11 99.48 0.71 -8.94 16 26 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 27 C -0.24 -11.26 9.80 22.73 0.22 -11.03 16 28 C -0.07 -2.70 9.67 22.22 0.21 -2.49 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 31 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 32 H 0.16 1.68 6.30 -2.92 -0.02 1.66 16 33 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.16 2.03 6.30 -2.91 -0.02 2.01 16 36 H 0.12 2.05 7.65 -2.38 -0.02 2.03 16 37 H 0.12 2.03 7.68 -2.39 -0.02 2.01 16 38 H 0.41 10.38 8.46 -92.71 -0.78 9.60 16 39 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 40 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 41 H 0.10 4.12 8.06 -2.91 -0.02 4.09 16 42 H 0.10 5.34 6.16 -2.91 -0.02 5.33 16 43 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 44 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 45 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -71.26 385.47 3.84 -67.42 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.24 Total: 33.64 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 5.11 Total: -32.39 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -2.35 Total: -63.85 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.19 Total: -43.67 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -71.26 3.84 -67.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361889552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.337 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds