Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46782 * 223.96281 * 3 2 1 5 5 N 1.46495 * 109.47106 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00464 * 274.71913 * 5 4 3 7 7 C 1.50696 * 109.47155 * 276.06242 * 6 5 4 8 8 H 1.08001 * 119.99880 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00003 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00048 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47007 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.46917 * 120.00010 * 11 9 7 14 14 H 1.48500 * 109.46985 * 240.00432 * 11 9 7 15 15 C 1.34783 * 120.00065 * 94.71828 * 5 4 3 16 16 O 1.21546 * 119.99692 * 354.68991 * 15 5 4 17 17 C 1.47860 * 120.00285 * 174.68900 * 15 5 4 18 18 C 1.39623 * 120.10964 * 311.44864 * 17 15 5 19 19 C 1.37985 * 120.00921 * 179.97438 * 18 17 15 20 20 C 1.38243 * 120.22584 * 359.97438 * 19 18 17 21 21 C 1.38995 * 120.21965 * 0.25742 * 20 19 18 22 22 N 1.39773 * 120.00690 * 179.71924 * 21 20 19 23 23 C 1.39687 * 120.00030 * 210.90525 * 22 21 20 24 24 N 1.33396 * 126.25774 * 4.91356 * 23 22 21 25 25 N 1.28574 * 109.88669 * 179.97438 * 24 23 22 26 26 N 1.28938 * 109.63575 * 0.02562 * 25 24 23 27 27 H 0.97000 * 126.46940 * 179.97438 * 26 25 24 28 28 N 1.31693 * 126.25678 * 184.60449 * 23 22 21 29 29 C 1.38692 * 119.98818 * 359.49042 * 21 20 19 30 30 H 1.08997 * 109.47479 * 103.96789 * 3 2 1 31 31 H 1.08996 * 109.47383 * 343.96046 * 3 2 1 32 32 H 1.09006 * 109.47187 * 60.00298 * 4 3 2 33 33 H 1.09001 * 109.47379 * 300.00196 * 4 3 2 34 34 H 1.09001 * 109.46936 * 36.05927 * 6 5 4 35 35 H 1.08997 * 109.47447 * 156.05627 * 6 5 4 36 36 H 0.97003 * 120.00016 * 180.02562 * 10 9 7 37 37 H 1.08002 * 119.99434 * 359.97438 * 18 17 15 38 38 H 1.07997 * 119.89020 * 179.97438 * 19 18 17 39 39 H 1.07999 * 119.89181 * 179.97438 * 20 19 18 40 40 H 0.96998 * 119.99481 * 30.90323 * 22 21 20 41 41 H 1.08005 * 120.11125 * 180.25930 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0392 1.0014 5 7 4.5824 1.0395 1.0019 6 6 5.3149 0.0869 1.8400 7 6 5.4356 0.6369 3.2378 8 1 5.0097 1.5999 3.4778 9 6 6.0898 -0.0894 4.2102 10 7 6.6089 -1.2618 3.9178 11 14 6.2400 0.5927 5.9428 12 1 5.5772 1.9198 6.0115 13 1 5.5864 -0.3366 6.8989 14 1 7.6754 0.7369 6.2953 15 6 5.2564 1.9162 0.2313 16 8 4.6527 2.6405 -0.5356 17 6 6.7302 1.9968 0.3190 18 6 7.3539 2.0865 1.5650 19 6 8.7295 2.1611 1.6444 20 6 9.4948 2.1470 0.4932 21 6 8.8835 2.0629 -0.7523 22 7 9.6614 2.0549 -1.9136 23 6 9.1570 2.6017 -3.0958 24 7 7.9951 3.2420 -3.2361 25 7 7.8454 3.6137 -4.4578 26 7 8.8683 3.2458 -5.1512 27 1 9.0083 3.3999 -6.0986 28 7 9.7441 2.5845 -4.2745 29 6 7.5019 1.9822 -0.8424 30 1 2.9713 0.2489 -0.9972 31 1 2.9718 -0.9868 0.2839 32 1 2.7542 0.7910 1.9988 33 1 2.7536 2.0267 0.7175 34 1 4.7773 -0.8609 1.8676 35 1 6.3102 -0.0719 1.4248 36 1 7.0688 -1.7729 4.6020 37 1 6.7596 2.0974 2.4667 38 1 9.2099 2.2308 2.6091 39 1 10.5710 2.2061 0.5616 40 1 10.5514 1.6696 -1.8984 41 1 7.0251 1.9125 -1.8090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361968384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = 163.868076 kcal Electronic energy + Delta-G solvation = -28784.678590 eV Core-core repulsion = 24703.624506 eV Total energy + Delta-G solvation = -4081.054084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.24006 -39.89493 -38.52900 -36.62701 -35.89701 -35.20888 -33.13999 -32.97959 -32.28241 -31.37149 -30.35339 -28.67749 -27.31187 -25.00285 -24.44703 -23.32919 -23.07382 -22.10865 -21.33951 -19.39959 -18.64008 -17.46512 -17.27036 -16.94958 -16.70900 -16.64188 -15.96696 -15.38970 -15.31458 -14.73634 -14.53831 -14.35894 -14.14204 -13.86051 -13.42261 -13.25598 -12.94781 -12.79393 -12.42702 -12.27965 -12.21960 -12.14197 -11.89780 -11.61193 -11.54101 -11.29973 -11.09870 -10.97205 -10.87831 -10.85475 -10.65266 -10.54698 -10.22253 -9.83997 -9.57535 -9.24401 -8.68032 -8.48561 -7.90497 -7.61665 -6.28413 -4.34711 0.86020 1.45608 1.68694 1.85840 2.44409 2.85158 2.90850 2.99363 3.15277 3.25970 3.28109 3.38294 3.67957 4.19471 4.22137 4.28114 4.41780 4.67028 5.03855 5.11003 5.28435 5.30634 5.34392 5.39436 5.50845 5.72850 5.80673 5.91102 5.99485 6.08991 6.27410 6.30607 6.45026 6.46338 6.61686 6.87674 6.97925 7.00862 7.12561 7.17270 7.41963 7.45025 7.64227 7.75319 7.93941 8.18065 8.20121 8.67554 8.87216 9.30934 10.77656 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.004024 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.749480 B = 6956.707986 C = 9598.785745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.222 3.778 3 C -0.046 4.046 4 C 0.127 3.873 5 N -0.591 5.591 6 C 0.231 3.769 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.072 3.928 10 N -0.881 5.881 11 Si 0.889 3.111 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.560 3.440 16 O -0.555 6.555 17 C -0.096 4.096 18 C -0.074 4.074 19 C -0.105 4.105 20 C -0.130 4.130 21 C 0.136 3.864 22 N -0.622 5.622 23 C 0.447 3.553 24 N -0.311 5.311 25 N 0.028 4.972 26 N -0.301 5.301 27 H 0.468 0.532 28 N -0.348 5.348 29 C -0.085 4.085 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.266 0.734 37 H 0.168 0.832 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.427 0.573 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.872 4.155 -11.032 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.096 4.096 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.112 3.888 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.133 4.133 10 N -0.518 5.518 11 Si 0.716 3.284 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.207 1.207 15 C 0.349 3.651 16 O -0.435 6.435 17 C -0.100 4.100 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.151 4.151 21 C 0.042 3.958 22 N -0.258 5.258 23 C 0.076 3.924 24 N -0.194 5.194 25 N 0.031 4.969 26 N -0.149 5.149 27 H 0.322 0.678 28 N -0.201 5.201 29 C -0.107 4.107 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.185 0.815 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.266 0.734 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.507 4.648 -11.641 14.123 hybrid contribution 1.614 -0.294 0.703 1.785 sum 8.121 4.353 -10.938 14.302 Atomic orbital electron populations 1.81171 1.13091 1.09349 1.09328 1.29124 0.95133 0.92645 0.92660 1.19783 0.81269 1.03854 1.03842 1.21123 0.81341 0.98580 0.98809 1.48127 1.05256 1.35615 1.43096 1.19611 0.92685 0.87434 0.89080 1.21455 1.36966 1.05144 0.94431 0.91576 1.24900 0.94975 0.94663 0.98758 1.69922 1.35756 1.11894 1.34239 0.86579 0.78078 0.79410 0.84346 1.19443 1.20862 1.20690 1.18363 0.87141 0.79912 0.79729 1.90731 1.69855 1.44021 1.38865 1.19621 0.93083 1.03647 0.93610 1.22317 0.95144 0.93155 0.98649 1.20885 0.93859 1.00107 0.97467 1.20842 0.99748 1.03710 0.90831 1.17275 0.90288 1.03980 0.84289 1.40716 1.19006 1.63134 1.02980 1.21645 0.89614 0.93202 0.87925 1.75599 1.17261 1.18118 1.08466 1.78380 1.09393 1.11021 0.98088 1.50633 1.11069 1.39767 1.13442 0.67764 1.78826 1.16586 1.25545 0.99119 1.20952 0.91469 0.99597 0.98685 0.87342 0.86943 0.89188 0.89829 0.94452 0.93415 0.92441 0.81538 0.85398 0.86036 0.73423 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.63 18.54 42.15 0.78 -6.85 16 2 C 0.22 3.25 15.43 -20.76 -0.32 2.93 16 3 C -0.05 -0.61 6.03 -29.52 -0.18 -0.79 16 4 C 0.13 2.00 5.39 -4.04 -0.02 1.98 16 5 N -0.59 -10.84 2.46 -176.17 -0.43 -11.27 16 6 C 0.23 4.75 4.68 -5.19 -0.02 4.73 16 7 C -0.54 -12.10 6.46 -34.44 -0.22 -12.32 16 8 H 0.07 1.50 7.67 -52.49 -0.40 1.10 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.88 -21.79 13.29 55.43 0.74 -21.06 16 11 Si 0.89 18.51 29.54 -169.99 -5.02 13.49 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 C 0.56 10.91 7.20 -12.32 -0.09 10.82 16 16 O -0.55 -11.87 16.58 5.32 0.09 -11.78 16 17 C -0.10 -1.76 4.68 -104.99 -0.49 -2.25 16 18 C -0.07 -1.32 7.76 -39.16 -0.30 -1.62 16 19 C -0.10 -1.59 10.02 -39.67 -0.40 -1.99 16 20 C -0.13 -1.73 9.95 -39.30 -0.39 -2.12 16 21 C 0.14 1.96 6.40 -83.79 -0.54 1.42 16 22 N -0.62 -7.51 5.54 -11.34 -0.06 -7.57 16 23 C 0.45 5.98 8.71 -320.77 -2.79 3.19 16 24 N -0.31 -4.70 9.73 30.04 0.29 -4.40 16 25 N 0.03 0.36 13.43 60.35 0.81 1.17 16 26 N -0.30 -2.80 8.45 60.35 0.51 -2.29 16 27 H 0.47 2.06 8.96 -331.94 -2.98 -0.92 16 28 N -0.35 -4.02 12.89 30.04 0.39 -3.63 16 29 C -0.09 -1.45 8.48 -38.96 -0.33 -1.78 16 30 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 33 H 0.08 1.35 7.36 -51.93 -0.38 0.97 16 34 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.05 1.05 6.13 -51.93 -0.32 0.73 16 36 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 37 H 0.17 3.26 4.87 -52.49 -0.26 3.00 16 38 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.43 3.85 8.93 -40.82 -0.36 3.49 16 41 H 0.13 2.40 6.24 -52.48 -0.33 2.07 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -30.10 365.51 -9.29 -39.39 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.69 Total: 5.53 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -6.20 Total: 3.77 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 3.02 Total: -55.91 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.10 -9.29 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361968384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.258 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds