Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46782 * 223.96281 * 3 2 1 5 5 N 1.46495 * 109.47106 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00464 * 274.71913 * 5 4 3 7 7 C 1.50696 * 109.47155 * 276.06242 * 6 5 4 8 8 H 1.08001 * 119.99880 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00003 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00048 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47007 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.46917 * 120.00010 * 11 9 7 14 14 H 1.48500 * 109.46985 * 240.00432 * 11 9 7 15 15 C 1.34783 * 120.00065 * 94.71828 * 5 4 3 16 16 O 1.21546 * 119.99692 * 354.68991 * 15 5 4 17 17 C 1.47860 * 120.00285 * 174.68900 * 15 5 4 18 18 C 1.39623 * 120.10964 * 311.44864 * 17 15 5 19 19 C 1.37985 * 120.00921 * 179.97438 * 18 17 15 20 20 C 1.38243 * 120.22584 * 359.97438 * 19 18 17 21 21 C 1.38995 * 120.21965 * 0.25742 * 20 19 18 22 22 N 1.39773 * 120.00690 * 179.71924 * 21 20 19 23 23 C 1.39687 * 120.00030 * 210.90525 * 22 21 20 24 24 N 1.33396 * 126.25774 * 4.91356 * 23 22 21 25 25 N 1.28574 * 109.88669 * 179.97438 * 24 23 22 26 26 N 1.28938 * 109.63575 * 0.02562 * 25 24 23 27 27 H 0.97000 * 126.46940 * 179.97438 * 26 25 24 28 28 N 1.31693 * 126.25678 * 184.60449 * 23 22 21 29 29 C 1.38692 * 119.98818 * 359.49042 * 21 20 19 30 30 H 1.08997 * 109.47479 * 103.96789 * 3 2 1 31 31 H 1.08996 * 109.47383 * 343.96046 * 3 2 1 32 32 H 1.09006 * 109.47187 * 60.00298 * 4 3 2 33 33 H 1.09001 * 109.47379 * 300.00196 * 4 3 2 34 34 H 1.09001 * 109.46936 * 36.05927 * 6 5 4 35 35 H 1.08997 * 109.47447 * 156.05627 * 6 5 4 36 36 H 0.97003 * 120.00016 * 180.02562 * 10 9 7 37 37 H 1.08002 * 119.99434 * 359.97438 * 18 17 15 38 38 H 1.07997 * 119.89020 * 179.97438 * 19 18 17 39 39 H 1.07999 * 119.89181 * 179.97438 * 20 19 18 40 40 H 0.96998 * 119.99481 * 30.90323 * 22 21 20 41 41 H 1.08005 * 120.11125 * 180.25930 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0392 1.0014 5 7 4.5824 1.0395 1.0019 6 6 5.3149 0.0869 1.8400 7 6 5.4356 0.6369 3.2378 8 1 5.0097 1.5999 3.4778 9 6 6.0898 -0.0894 4.2102 10 7 6.6089 -1.2618 3.9178 11 14 6.2400 0.5927 5.9428 12 1 5.5772 1.9198 6.0115 13 1 5.5864 -0.3366 6.8989 14 1 7.6754 0.7369 6.2953 15 6 5.2564 1.9162 0.2313 16 8 4.6527 2.6405 -0.5356 17 6 6.7302 1.9968 0.3190 18 6 7.3539 2.0865 1.5650 19 6 8.7295 2.1611 1.6444 20 6 9.4948 2.1470 0.4932 21 6 8.8835 2.0629 -0.7523 22 7 9.6614 2.0549 -1.9136 23 6 9.1570 2.6017 -3.0958 24 7 7.9951 3.2420 -3.2361 25 7 7.8454 3.6137 -4.4578 26 7 8.8683 3.2458 -5.1512 27 1 9.0083 3.3999 -6.0986 28 7 9.7441 2.5845 -4.2745 29 6 7.5019 1.9822 -0.8424 30 1 2.9713 0.2489 -0.9972 31 1 2.9718 -0.9868 0.2839 32 1 2.7542 0.7910 1.9988 33 1 2.7536 2.0267 0.7175 34 1 4.7773 -0.8609 1.8676 35 1 6.3102 -0.0719 1.4248 36 1 7.0688 -1.7729 4.6020 37 1 6.7596 2.0974 2.4667 38 1 9.2099 2.2308 2.6091 39 1 10.5710 2.2061 0.5616 40 1 10.5514 1.6696 -1.8984 41 1 7.0251 1.9125 -1.8090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361968384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = 147.077904 kcal Electronic energy + Delta-G solvation = -28785.406666 eV Core-core repulsion = 24703.624506 eV Total energy + Delta-G solvation = -4081.782160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.19836 -41.27278 -39.79843 -37.91623 -37.05680 -36.69571 -34.64215 -34.09277 -33.40161 -32.65343 -31.62451 -29.83856 -28.99825 -26.17022 -25.56489 -24.94614 -24.21947 -23.40325 -22.44458 -20.59113 -19.78791 -18.78740 -18.43026 -18.29475 -18.12862 -17.68072 -17.31827 -16.76379 -16.61066 -16.17154 -15.95916 -15.70334 -15.20634 -15.13639 -14.72236 -14.48266 -14.26929 -14.19312 -13.93252 -13.59928 -13.55205 -13.28394 -13.15136 -13.02093 -12.81012 -12.68552 -12.51764 -12.49076 -12.30338 -11.96693 -11.83287 -11.78041 -11.66225 -11.54047 -10.77168 -10.68402 -10.45210 -9.75970 -9.46273 -8.74647 -8.07611 -6.17005 -0.08928 0.21973 0.52272 0.96948 1.39189 1.49024 1.56280 1.62316 1.63794 1.78409 1.91669 2.03412 2.28666 2.52415 3.00905 3.16898 3.23974 3.24551 3.62184 3.81436 4.11464 4.14242 4.16942 4.33159 4.37076 4.55953 4.57223 4.68036 4.80715 4.88758 5.00731 5.04487 5.09621 5.28543 5.40045 5.67733 5.69635 5.74081 5.80370 5.83197 5.91808 6.14726 6.19323 6.35630 6.54709 6.59594 6.92238 7.25113 7.32719 7.51730 8.98095 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.004024 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.749480 B = 6956.707986 C = 9598.785745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.032 4.032 4 C 0.123 3.877 5 N -0.588 5.588 6 C 0.247 3.753 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.037 3.963 10 N -0.910 5.910 11 Si 0.938 3.062 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.558 3.442 16 O -0.581 6.581 17 C -0.117 4.117 18 C -0.093 4.093 19 C -0.106 4.106 20 C -0.113 4.113 21 C 0.146 3.854 22 N -0.611 5.611 23 C 0.436 3.564 24 N -0.352 5.352 25 N 0.019 4.981 26 N -0.267 5.267 27 H 0.488 0.512 28 N -0.341 5.341 29 C -0.097 4.097 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.442 0.558 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.924 4.300 -11.624 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.073 4.073 4 C -0.002 4.002 5 N -0.317 5.317 6 C 0.127 3.873 7 C -0.573 4.573 8 H 0.077 0.923 9 C -0.164 4.164 10 N -0.549 5.549 11 Si 0.765 3.235 12 H -0.195 1.195 13 H -0.215 1.215 14 H -0.202 1.202 15 C 0.347 3.653 16 O -0.463 6.463 17 C -0.121 4.121 18 C -0.112 4.112 19 C -0.125 4.125 20 C -0.134 4.134 21 C 0.050 3.950 22 N -0.250 5.250 23 C 0.065 3.935 24 N -0.235 5.235 25 N 0.022 4.978 26 N -0.121 5.121 27 H 0.347 0.653 28 N -0.194 5.194 29 C -0.119 4.119 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.181 0.819 40 H 0.285 0.715 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.564 4.799 -12.262 15.708 hybrid contribution 1.051 -0.280 0.732 1.311 sum 9.615 4.519 -11.530 15.678 Atomic orbital electron populations 1.81196 1.14183 1.10645 1.10601 1.29182 0.95034 0.91443 0.91471 1.19692 0.80212 1.03820 1.03538 1.21215 0.79996 0.99235 0.99714 1.48059 1.06143 1.35006 1.42475 1.19288 0.92203 0.87305 0.88491 1.21557 1.36026 1.04553 0.95168 0.92333 1.25382 0.94984 0.94836 1.01241 1.69996 1.36961 1.12887 1.35017 0.85803 0.78019 0.78528 0.81126 1.19505 1.21512 1.20200 1.18643 0.87900 0.79475 0.79268 1.90700 1.70566 1.44997 1.40001 1.19588 0.92457 1.05556 0.94455 1.22118 0.96380 0.95219 0.97468 1.21130 0.92862 0.99321 0.99144 1.21183 1.01646 1.01217 0.89403 1.17308 0.89561 1.02516 0.85587 1.40588 1.19287 1.63040 1.02059 1.21785 0.89527 0.93637 0.88591 1.75580 1.18599 1.19719 1.09596 1.78325 1.10113 1.11486 0.97905 1.50695 1.09693 1.37525 1.14198 0.65254 1.78794 1.16660 1.25271 0.98691 1.20900 0.92767 1.00656 0.97579 0.86425 0.85233 0.89059 0.90345 0.95062 0.94625 0.92522 0.83731 0.83558 0.81853 0.71546 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.34 18.54 20.01 0.37 -15.97 16 2 C 0.25 7.04 15.43 89.44 1.38 8.42 16 3 C -0.03 -0.81 6.03 28.79 0.17 -0.64 16 4 C 0.12 3.89 5.39 86.38 0.47 4.36 16 5 N -0.59 -21.88 2.46 -829.54 -2.04 -23.92 16 6 C 0.25 10.27 4.68 85.63 0.40 10.67 16 7 C -0.53 -24.03 6.46 25.60 0.17 -23.86 16 8 H 0.06 2.69 7.67 -2.91 -0.02 2.67 16 9 C 0.04 1.73 5.46 84.65 0.46 2.19 16 10 N -0.91 -44.92 13.29 21.45 0.28 -44.64 16 11 Si 0.94 37.77 29.54 68.60 2.03 39.79 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 13 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 15 C 0.56 22.26 7.20 86.79 0.62 22.89 16 16 O -0.58 -25.51 16.58 -3.86 -0.06 -25.58 16 17 C -0.12 -4.37 4.68 -20.11 -0.09 -4.46 16 18 C -0.09 -3.32 7.76 22.54 0.17 -3.14 16 19 C -0.11 -3.05 10.02 22.21 0.22 -2.83 16 20 C -0.11 -2.71 9.95 22.45 0.22 -2.48 16 21 C 0.15 3.95 6.40 38.17 0.24 4.20 16 22 N -0.61 -13.44 5.54 -189.79 -1.05 -14.49 16 23 C 0.44 10.98 8.71 260.77 2.27 13.25 16 24 N -0.35 -10.42 9.73 -58.87 -0.57 -11.00 16 25 N 0.02 0.45 13.43 37.02 0.50 0.95 16 26 N -0.27 -4.44 8.45 37.02 0.31 -4.13 16 27 H 0.49 3.09 8.96 -340.37 -3.05 0.04 16 28 N -0.34 -7.13 12.89 -58.86 -0.76 -7.89 16 29 C -0.10 -3.29 8.48 22.67 0.19 -3.10 16 30 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.09 2.85 8.11 -2.38 -0.02 2.83 16 33 H 0.08 2.58 7.36 -2.39 -0.02 2.56 16 34 H 0.03 1.34 8.12 -2.39 -0.02 1.32 16 35 H 0.04 1.59 6.13 -2.39 -0.01 1.58 16 36 H 0.27 12.61 8.31 -92.71 -0.77 11.84 16 37 H 0.15 5.78 4.87 -2.91 -0.01 5.77 16 38 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.44 6.65 8.93 -92.71 -0.83 5.82 16 41 H 0.12 4.42 6.24 -2.91 -0.02 4.41 16 Total: -1.00 -65.24 365.51 3.17 -62.06 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -2.74 Total: 19.34 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 6.91 Total: 25.45 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -2.96 Total: -121.08 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.58 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.79 kcal Total: -65.24 3.17 -62.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361968384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.143 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds