Wall clock time and date at job start Sat Apr 11 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38173 * 119.97358 * 2 1 4 4 C 1.38710 * 119.94428 * 180.23191 * 3 2 1 5 5 O 1.35896 * 120.05458 * 179.76752 * 4 3 2 6 6 C 1.38750 * 119.89062 * 359.49393 * 4 3 2 7 7 C 1.38129 * 119.94333 * 0.27741 * 6 4 3 8 8 C 1.38244 * 119.97476 * 179.75257 * 2 1 3 9 9 C 1.50697 * 119.94362 * 359.97438 * 8 2 1 10 10 C 1.50705 * 109.46813 * 85.02588 * 9 8 2 11 11 O 1.21281 * 119.99730 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00141 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47386 * 180.02562 * 13 12 10 15 15 C 1.38300 * 119.92538 * 269.72651 * 14 13 12 16 16 C 1.38108 * 120.06498 * 179.72878 * 15 14 13 17 17 C 1.38876 * 119.92751 * 0.56332 * 16 15 14 18 18 O 1.35757 * 120.06350 * 179.68589 * 17 16 15 19 19 C 1.34829 * 116.99557 * 174.48987 * 18 17 16 20 20 H 1.08003 * 120.00340 * 5.05768 * 19 18 17 21 21 C 1.38661 * 120.00113 * 185.05619 * 19 18 17 22 22 N 1.31551 * 120.00093 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99528 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47078 * 89.99961 * 23 21 19 25 25 H 1.48500 * 109.46647 * 209.99846 * 23 21 19 26 26 H 1.48496 * 109.47385 * 330.00110 * 23 21 19 27 27 C 1.38870 * 119.86476 * 359.70930 * 17 16 15 28 28 C 1.38098 * 119.93399 * 359.97438 * 27 17 16 29 29 H 1.08996 * 109.47518 * 270.25120 * 1 2 3 30 30 H 1.09003 * 109.47581 * 30.25544 * 1 2 3 31 31 H 1.09000 * 109.47322 * 150.25174 * 1 2 3 32 32 H 1.08007 * 120.02397 * 0.02562 * 3 2 1 33 33 H 0.96701 * 114.00560 * 269.72784 * 5 4 3 34 34 H 1.07994 * 120.03175 * 180.29435 * 6 4 3 35 35 H 1.07998 * 119.97430 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.47516 * 205.02548 * 9 8 2 37 37 H 1.09005 * 109.47324 * 325.03489 * 9 8 2 38 38 H 0.96996 * 120.00210 * 0.02562 * 12 10 9 39 39 H 1.09008 * 109.47197 * 300.00304 * 13 12 10 40 40 H 1.09003 * 109.47088 * 59.99987 * 13 12 10 41 41 H 1.07998 * 119.96741 * 359.97413 * 15 14 13 42 42 H 1.07997 * 120.03173 * 180.27902 * 16 15 14 43 43 H 0.97006 * 119.99680 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.03657 * 179.97438 * 27 17 16 45 45 H 1.07995 * 119.96794 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1962 -0.0049 5 8 4.2655 2.3721 -0.0096 6 6 4.2752 -0.0070 0.0009 7 6 3.5805 -1.2009 0.0057 8 6 2.1976 -1.1975 0.0052 9 6 1.4423 -2.5015 0.0114 10 6 1.0834 -2.8808 -1.4023 11 8 1.4093 -2.1631 -2.3240 12 7 0.4011 -4.0180 -1.6423 13 6 0.0527 -4.3871 -3.0166 14 6 -0.7028 -5.6910 -3.0105 15 6 -0.0159 -6.8868 -3.1145 16 6 -0.7049 -8.0837 -3.1035 17 6 -2.0898 -8.0851 -2.9998 18 8 -2.7703 -9.2597 -2.9952 19 6 -4.0993 -9.1962 -2.7772 20 1 -4.5883 -8.2365 -2.6979 21 6 -4.8384 -10.3631 -2.6550 22 7 -6.1350 -10.3011 -2.4419 23 14 -3.9924 -12.0230 -2.7916 24 1 -3.5422 -12.4613 -1.4460 25 1 -4.9446 -13.0197 -3.3440 26 1 -2.8181 -11.9075 -3.6931 27 6 -2.7770 -6.8823 -2.9012 28 6 -2.0819 -5.6891 -2.9061 29 1 -0.3634 0.0045 1.0276 30 1 -0.3634 0.8877 -0.5178 31 1 -0.3634 -0.8922 -0.5099 32 1 1.6572 2.1323 0.0004 33 1 4.4632 2.7086 -0.8944 34 1 5.3551 -0.0102 0.0019 35 1 4.1177 -2.1378 0.0106 36 1 2.0660 -3.2807 0.4494 37 1 0.5316 -2.3911 0.6002 38 1 0.1407 -4.5922 -0.9052 39 1 -0.5713 -3.6081 -3.4550 40 1 0.9634 -4.4972 -3.6053 41 1 1.0607 -6.8849 -3.2003 42 1 -0.1676 -9.0174 -3.1802 43 1 -6.6520 -11.1175 -2.3560 44 1 -3.8540 -6.8801 -2.8208 45 1 -2.6158 -4.7534 -2.8299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362018498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:16 Heat of formation + Delta-G solvation = -64.911932 kcal Electronic energy + Delta-G solvation = -27436.954945 eV Core-core repulsion = 23384.935057 eV Total energy + Delta-G solvation = -4052.019888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.54362 -39.58736 -39.12280 -37.39049 -36.94922 -34.48014 -32.94229 -32.53320 -32.28707 -30.44883 -30.16974 -28.02533 -26.90032 -25.82136 -24.43058 -22.57112 -22.22613 -21.60198 -20.65723 -20.33557 -18.28304 -18.03062 -17.55631 -17.11436 -16.58900 -16.50291 -15.68119 -15.35168 -15.14905 -14.85106 -14.63808 -14.20008 -14.06704 -13.93050 -13.84430 -13.56342 -13.40756 -13.29029 -13.23959 -12.84497 -12.73236 -12.37586 -12.28733 -12.08875 -11.98363 -11.74634 -11.59685 -11.48309 -11.00445 -10.88027 -10.80944 -10.73425 -10.25643 -9.99045 -9.52068 -9.05970 -9.03993 -8.98346 -8.66580 -8.42312 -7.51801 -6.53027 -4.20074 0.93388 1.10036 1.91626 1.98408 2.58426 3.11772 3.15778 3.18575 3.32308 3.51852 3.93433 4.13870 4.36640 4.38010 4.50380 4.66638 4.71094 4.83392 4.90062 4.97956 4.98941 5.13534 5.17122 5.18990 5.30383 5.36065 5.40309 5.51687 5.53298 5.68005 5.68666 5.82539 5.86349 5.99031 6.06242 6.15322 6.20511 6.34145 6.40083 6.44188 6.55082 6.63610 6.85941 7.08269 7.14667 7.35118 7.45635 7.51570 7.67250 7.90887 8.18877 8.81451 9.41839 10.54018 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030247 B = 0.001696 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.482492 B =16500.739778 C =16851.983943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 C -0.145 4.145 4 C 0.105 3.895 5 O -0.502 6.502 6 C -0.151 4.151 7 C -0.087 4.087 8 C -0.072 4.072 9 C -0.106 4.106 10 C 0.510 3.490 11 O -0.537 6.537 12 N -0.724 5.724 13 C 0.178 3.822 14 C -0.206 4.206 15 C -0.056 4.056 16 C -0.195 4.195 17 C 0.166 3.834 18 O -0.212 6.212 19 C -0.392 4.392 20 H 0.108 0.892 21 C 0.065 3.935 22 N -0.874 5.874 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.224 4.224 28 C -0.052 4.052 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.390 0.610 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.402 0.598 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.281 0.719 44 H 0.135 0.865 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.583 18.328 5.587 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.051 4.051 3 C -0.164 4.164 4 C 0.060 3.940 5 O -0.312 6.312 6 C -0.169 4.169 7 C -0.105 4.105 8 C -0.072 4.072 9 C -0.146 4.146 10 C 0.296 3.704 11 O -0.414 6.414 12 N -0.376 5.376 13 C 0.056 3.944 14 C -0.208 4.208 15 C -0.075 4.075 16 C -0.214 4.214 17 C 0.113 3.887 18 O -0.117 6.117 19 C -0.468 4.468 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.511 5.511 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.243 4.243 28 C -0.071 4.071 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.245 0.755 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.237 0.763 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.091 0.909 44 H 0.152 0.848 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.615 18.416 5.506 25.407 hybrid contribution -0.022 -0.937 -0.217 0.962 sum 16.592 17.479 5.289 24.674 Atomic orbital electron populations 1.20855 0.90927 1.03382 1.02320 1.19575 0.96094 0.91936 0.97510 1.21228 0.93398 0.98216 1.03550 1.18422 0.89876 0.85146 1.00520 1.84803 1.76336 1.36524 1.33554 1.21321 1.00356 0.91848 1.03379 1.20860 0.93255 0.97837 0.98544 1.19164 0.93371 0.93304 1.01387 1.20722 1.02198 0.96248 0.95420 1.20494 0.77969 0.80986 0.90929 1.90718 1.53465 1.51310 1.45916 1.46348 1.57255 1.23817 1.10147 1.19984 0.98338 0.93759 0.82324 1.19276 0.93724 0.93509 1.14273 1.20536 0.98427 0.91207 0.97357 1.20217 0.91409 0.98247 1.11561 1.19183 0.91170 0.85873 0.92451 1.83577 1.22784 1.26991 1.78304 1.20787 0.78551 0.96870 1.50549 0.87490 1.24492 0.94865 0.99198 0.95373 1.69641 1.05330 1.30164 1.46002 0.86174 0.79753 0.81564 0.79386 1.19800 1.20661 1.18328 1.21281 1.01254 0.91733 1.10045 1.20696 0.93036 0.97122 0.96269 0.90795 0.91250 0.91261 0.85505 0.75464 0.85525 0.85644 0.87890 0.87726 0.76330 0.91512 0.91527 0.86792 0.86362 0.90881 0.84781 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.21 36.00 0.33 -0.66 16 2 C -0.05 -0.51 5.88 -104.65 -0.62 -1.12 16 3 C -0.15 -1.42 9.64 -39.43 -0.38 -1.81 16 4 C 0.10 1.03 6.70 -39.22 -0.26 0.76 16 5 O -0.50 -4.26 13.50 -19.41 -0.26 -4.52 16 6 C -0.15 -1.42 9.99 -39.43 -0.39 -1.81 16 7 C -0.09 -0.83 9.67 -39.60 -0.38 -1.21 16 8 C -0.07 -0.71 4.37 -104.60 -0.46 -1.17 16 9 C -0.11 -0.89 5.15 -29.03 -0.15 -1.03 16 10 C 0.51 5.85 7.04 -10.98 -0.08 5.77 16 11 O -0.54 -8.24 16.03 5.56 0.09 -8.16 16 12 N -0.72 -7.86 5.55 -61.47 -0.34 -8.20 16 13 C 0.18 2.26 5.80 -5.19 -0.03 2.23 16 14 C -0.21 -3.02 5.25 -104.58 -0.55 -3.57 16 15 C -0.06 -0.86 9.69 -39.61 -0.38 -1.24 16 16 C -0.20 -3.53 9.99 -39.39 -0.39 -3.93 16 17 C 0.17 3.57 6.65 -39.11 -0.26 3.31 16 18 O -0.21 -5.32 8.59 0.03 0.00 -5.32 16 19 C -0.39 -10.57 9.95 30.89 0.31 -10.26 16 20 H 0.11 2.94 5.44 -52.48 -0.29 2.65 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 22 N -0.87 -24.37 13.96 55.48 0.77 -23.60 16 23 Si 0.91 20.84 28.62 -169.99 -4.86 15.98 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 27 C -0.22 -4.45 9.17 -39.40 -0.36 -4.81 16 28 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.63 6.15 -51.93 -0.32 0.31 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.39 1.52 9.06 45.56 0.41 1.94 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.10 0.64 8.05 -51.93 -0.42 0.22 16 37 H 0.10 0.69 6.98 -51.93 -0.36 0.33 16 38 H 0.40 3.72 8.46 -40.82 -0.35 3.38 16 39 H 0.07 0.88 8.08 -51.92 -0.42 0.46 16 40 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 42 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 43 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -32.20 385.75 -8.30 -40.50 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.97 Total: 7.62 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -4.54 Total: -20.11 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.43 Total: -31.80 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.17 Total: -18.00 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.86 Total: 15.98 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.20 -8.30 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362018498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.414 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds