Wall clock time and date at job start Sat Apr 11 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35894 * 117.00716 * 2 1 4 4 C 1.38732 * 120.06177 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94586 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05435 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.94220 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47430 * 339.99830 * 7 6 5 9 9 O 1.42903 * 109.46772 * 219.99978 * 7 6 5 10 10 C 1.53003 * 109.47075 * 100.00397 * 7 6 5 11 11 N 1.46499 * 109.46949 * 184.99999 * 10 7 6 12 12 C 1.34774 * 119.99962 * 180.02562 * 11 10 7 13 13 O 1.21617 * 119.99813 * 359.97438 * 12 11 10 14 14 C 1.47430 * 120.00197 * 179.97438 * 12 11 10 15 15 C 1.39221 * 120.28120 * 354.16428 * 14 12 11 16 16 C 1.38227 * 120.09115 * 180.02562 * 15 14 12 17 17 C 1.38815 * 120.67597 * 359.95205 * 16 15 14 18 18 C 1.37596 * 120.57337 * 0.02562 * 17 16 15 19 19 C 1.40710 * 119.88212 * 359.97438 * 18 17 16 20 20 C 1.40886 * 120.32816 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99524 * 145.82893 * 20 19 18 22 22 C 1.40273 * 120.00177 * 325.82197 * 20 19 18 23 23 N 1.30627 * 119.99972 * 350.74240 * 22 20 19 24 24 Si 1.86797 * 119.99787 * 170.74394 * 22 20 19 25 25 H 1.48496 * 109.47315 * 90.00118 * 24 22 20 26 26 H 1.48503 * 109.47227 * 210.00316 * 24 22 20 27 27 H 1.48497 * 109.47475 * 330.00067 * 24 22 20 28 28 C 1.38265 * 120.11437 * 0.27701 * 6 5 4 29 29 C 1.38147 * 120.05181 * 359.45449 * 28 6 5 30 30 H 1.08998 * 109.47573 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47155 * 300.00672 * 1 2 3 32 32 H 1.09009 * 109.47059 * 60.00164 * 1 2 3 33 33 H 1.07997 * 120.02182 * 359.95251 * 4 3 2 34 34 H 1.07992 * 119.97032 * 180.02562 * 5 4 3 35 35 H 0.96699 * 114.00507 * 299.99720 * 9 7 6 36 36 H 1.09002 * 109.47082 * 64.99593 * 10 7 6 37 37 H 1.08996 * 109.46748 * 304.99831 * 10 7 6 38 38 H 0.97004 * 120.00368 * 359.97438 * 11 10 7 39 39 H 1.08001 * 119.95389 * 0.02562 * 15 14 12 40 40 H 1.08005 * 119.66008 * 179.97438 * 16 15 14 41 41 H 1.08002 * 119.71692 * 180.02562 * 17 16 15 42 42 H 1.07999 * 120.06005 * 179.73002 * 18 17 16 43 43 H 0.97004 * 119.99993 * 179.97438 * 23 22 20 44 44 H 1.08000 * 119.97401 * 179.70299 * 28 6 5 45 45 H 1.08003 * 120.02332 * 180.28182 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5167 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 3.9863 5.0183 -0.0028 8 1 5.0118 4.9039 0.3484 9 8 3.2833 5.9119 0.8629 10 6 3.9941 5.5855 -1.4238 11 7 4.7624 6.8327 -1.4475 12 6 4.9053 7.5143 -2.6014 13 8 4.3968 7.0937 -3.6230 14 6 5.6779 8.7696 -2.6252 15 6 6.1596 9.3201 -1.4406 16 6 6.8832 10.4976 -1.4675 17 6 7.1394 11.1441 -2.6688 18 6 6.6769 10.6243 -3.8559 19 6 5.9379 9.4269 -3.8562 20 6 5.4593 8.8866 -5.0662 21 1 5.4035 7.8157 -5.1946 22 6 5.0552 9.7395 -6.1039 23 7 4.9499 11.0238 -5.8902 24 14 4.6676 9.0385 -7.7915 25 1 3.2282 8.6802 -7.8600 26 1 4.9753 10.0529 -8.8314 27 1 5.4914 7.8251 -8.0247 28 6 1.9212 3.6047 0.0042 29 6 1.2916 2.3750 -0.0009 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 4.0208 0.3797 -0.0002 34 1 5.1346 2.5747 -0.0019 35 1 2.3619 6.0610 0.6101 36 1 2.9704 5.7832 -1.7417 37 1 4.4518 4.8639 -2.1004 38 1 5.1677 7.1683 -0.6326 39 1 5.9677 8.8264 -0.4994 40 1 7.2532 10.9187 -0.5443 41 1 7.7068 12.0631 -2.6719 42 1 6.8774 11.1365 -4.7854 43 1 4.6708 11.6136 -6.6079 44 1 1.3344 4.5113 0.0086 45 1 0.2130 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362446036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:40 Heat of formation + Delta-G solvation = -77.980736 kcal Electronic energy + Delta-G solvation = -28244.928225 eV Core-core repulsion = 24192.341631 eV Total energy + Delta-G solvation = -4052.586594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.54602 -39.18349 -38.40686 -36.88477 -36.35191 -33.97034 -33.38515 -31.37028 -31.32782 -30.01077 -29.58748 -28.14358 -27.05952 -25.35125 -23.73919 -22.79201 -21.90593 -21.27551 -20.76859 -19.35248 -18.56954 -17.64453 -17.17149 -16.70099 -16.42519 -16.06247 -15.39618 -15.20704 -15.14926 -14.88186 -14.48705 -14.12717 -14.06978 -13.84728 -13.64730 -13.40118 -13.12635 -13.05687 -12.73087 -12.68642 -12.27466 -12.13009 -12.06983 -11.62359 -11.52768 -11.16121 -11.08907 -11.01466 -10.95167 -10.68373 -10.52306 -10.28822 -10.06638 -9.65033 -9.27569 -9.24625 -8.47437 -8.38987 -8.31409 -7.56155 -7.33238 -6.77951 -4.36521 1.06703 1.09915 2.38445 2.83441 2.94182 3.10725 3.18223 3.25044 3.41292 3.88820 3.98994 4.17624 4.32703 4.44660 4.57461 4.65936 4.70548 4.72620 4.78492 4.89918 5.02027 5.09270 5.12663 5.24284 5.39121 5.64154 5.71001 5.84605 5.90131 5.95139 6.03464 6.05060 6.21049 6.32737 6.34727 6.44676 6.64028 6.97973 7.06342 7.08880 7.17075 7.24572 7.45067 7.48802 7.65277 7.91228 8.00502 8.20243 8.40751 8.68436 8.84368 8.92009 9.42365 10.17493 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.002461 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.168157 B =11372.748847 C =12893.530224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.150 4.150 5 C -0.066 4.066 6 C -0.147 4.147 7 C 0.142 3.858 8 H 0.113 0.887 9 O -0.551 6.551 10 C 0.100 3.900 11 N -0.744 5.744 12 C 0.564 3.436 13 O -0.540 6.540 14 C -0.261 4.261 15 C -0.056 4.056 16 C -0.246 4.246 17 C -0.095 4.095 18 C -0.149 4.149 19 C 0.146 3.854 20 C -0.416 4.416 21 H 0.104 0.896 22 C 0.069 3.931 23 N -0.794 5.794 24 Si 0.917 3.083 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.259 1.259 28 C -0.068 4.068 29 C -0.205 4.205 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.375 0.625 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.396 0.604 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.282 0.718 44 H 0.125 0.875 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.375 -15.441 11.305 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.168 4.168 5 C -0.084 4.084 6 C -0.148 4.148 7 C 0.083 3.917 8 H 0.130 0.870 9 O -0.357 6.357 10 C -0.024 4.024 11 N -0.400 5.400 12 C 0.358 3.642 13 O -0.418 6.418 14 C -0.266 4.266 15 C -0.075 4.075 16 C -0.265 4.265 17 C -0.114 4.114 18 C -0.168 4.168 19 C 0.141 3.859 20 C -0.444 4.444 21 H 0.122 0.878 22 C -0.149 4.149 23 N -0.419 5.419 24 Si 0.742 3.258 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.183 1.183 28 C -0.086 4.086 29 C -0.223 4.223 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.223 0.777 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.231 0.769 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.143 0.857 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.175 -15.714 10.723 20.001 hybrid contribution -0.976 0.121 -0.579 1.141 sum -7.151 -15.594 10.144 19.930 Atomic orbital electron populations 1.23066 0.78314 1.03968 1.01479 1.86063 1.21469 1.26996 1.88698 1.19067 0.92432 0.84140 0.96318 1.20420 0.91365 0.98675 1.06355 1.20839 1.00061 0.90781 0.96738 1.20332 0.94149 0.95803 1.04551 1.21009 0.96148 0.84790 0.89800 0.86976 1.86619 1.28546 1.66338 1.54194 1.21792 0.97358 0.87682 0.95616 1.45934 1.57041 1.24728 1.12291 1.18441 0.79756 0.84062 0.81896 1.90678 1.49312 1.69293 1.32537 1.19445 1.12634 1.00393 0.94165 1.20672 0.96262 0.95289 0.95288 1.20290 1.10163 0.99475 0.96596 1.20801 0.99294 0.97962 0.93369 1.21355 1.00093 0.98508 0.96829 1.17486 0.87307 0.89928 0.91140 1.20147 1.32460 0.96145 0.95668 0.87794 1.26117 0.93529 0.94354 1.00901 1.69718 1.33576 1.04379 1.34233 0.86156 0.79859 0.79667 0.80140 1.19364 1.20332 1.18325 1.20682 0.93838 0.97253 0.96825 1.21186 1.00078 0.92202 1.08864 0.88226 0.92616 0.92505 0.85011 0.84899 0.77720 0.91883 0.91148 0.76918 0.89117 0.89097 0.89105 0.86479 0.90754 0.85730 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.11 10.50 -19.41 -0.20 -3.31 16 3 C 0.13 1.30 6.69 -39.22 -0.26 1.04 16 4 C -0.15 -1.51 9.99 -39.43 -0.39 -1.90 16 5 C -0.07 -0.66 9.66 -39.61 -0.38 -1.04 16 6 C -0.15 -1.56 4.97 -104.60 -0.52 -2.08 16 7 C 0.14 1.60 3.24 -27.88 -0.09 1.51 16 8 H 0.11 1.19 8.00 -51.93 -0.42 0.77 16 9 O -0.55 -6.34 13.13 -35.23 -0.46 -6.80 16 10 C 0.10 1.47 5.29 -4.04 -0.02 1.44 16 11 N -0.74 -13.09 5.45 -61.38 -0.33 -13.42 16 12 C 0.56 13.07 7.72 -12.52 -0.10 12.97 16 13 O -0.54 -14.22 13.60 5.26 0.07 -14.15 16 14 C -0.26 -6.42 5.92 -104.37 -0.62 -7.04 16 15 C -0.06 -1.21 9.52 -39.22 -0.37 -1.58 16 16 C -0.25 -5.27 10.03 -39.37 -0.39 -5.67 16 17 C -0.10 -2.17 10.01 -39.60 -0.40 -2.56 16 18 C -0.15 -3.80 8.63 -38.88 -0.34 -4.13 16 19 C 0.15 3.93 5.51 -106.54 -0.59 3.34 16 20 C -0.42 -11.50 7.67 -37.82 -0.29 -11.79 16 21 H 0.10 2.98 5.93 -52.49 -0.31 2.67 16 22 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 23 N -0.79 -20.73 11.14 55.56 0.62 -20.11 16 24 Si 0.92 19.82 29.57 -169.99 -5.03 14.79 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 28 C -0.07 -0.67 9.32 -39.60 -0.37 -1.04 16 29 C -0.20 -1.95 9.04 -39.43 -0.36 -2.30 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.06 0.31 7.66 -51.92 -0.40 -0.09 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.07 8.03 -52.49 -0.42 0.65 16 35 H 0.37 3.32 7.49 45.56 0.34 3.66 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.40 6.24 6.54 -40.82 -0.27 5.97 16 39 H 0.09 1.64 6.44 -52.49 -0.34 1.30 16 40 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.12 3.05 6.59 -52.49 -0.35 2.70 16 43 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 44 H 0.12 0.99 6.77 -52.49 -0.36 0.64 16 45 H 0.13 0.95 6.30 -52.48 -0.33 0.61 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -32.44 377.27 -9.15 -41.59 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -4.91 Total: 13.71 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -4.59 Total: -17.98 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.28 Total: -33.53 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.59 Total: -24.27 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.44 -9.15 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362446036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.394 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds