Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35894 * 117.00716 * 2 1 4 4 C 1.38732 * 120.06177 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94586 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05435 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.94220 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47430 * 339.99830 * 7 6 5 9 9 O 1.42903 * 109.46772 * 219.99978 * 7 6 5 10 10 C 1.53003 * 109.47075 * 100.00397 * 7 6 5 11 11 N 1.46499 * 109.46949 * 184.99999 * 10 7 6 12 12 C 1.34774 * 119.99962 * 180.02562 * 11 10 7 13 13 O 1.21617 * 119.99813 * 359.97438 * 12 11 10 14 14 C 1.47430 * 120.00197 * 179.97438 * 12 11 10 15 15 C 1.39221 * 120.28120 * 354.16428 * 14 12 11 16 16 C 1.38227 * 120.09115 * 180.02562 * 15 14 12 17 17 C 1.38815 * 120.67597 * 359.95205 * 16 15 14 18 18 C 1.37596 * 120.57337 * 0.02562 * 17 16 15 19 19 C 1.40710 * 119.88212 * 359.97438 * 18 17 16 20 20 C 1.40886 * 120.32816 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99524 * 145.82893 * 20 19 18 22 22 C 1.40273 * 120.00177 * 325.82197 * 20 19 18 23 23 N 1.30627 * 119.99972 * 350.74240 * 22 20 19 24 24 Si 1.86797 * 119.99787 * 170.74394 * 22 20 19 25 25 H 1.48496 * 109.47315 * 90.00118 * 24 22 20 26 26 H 1.48503 * 109.47227 * 210.00316 * 24 22 20 27 27 H 1.48497 * 109.47475 * 330.00067 * 24 22 20 28 28 C 1.38265 * 120.11437 * 0.27701 * 6 5 4 29 29 C 1.38147 * 120.05181 * 359.45449 * 28 6 5 30 30 H 1.08998 * 109.47573 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47155 * 300.00672 * 1 2 3 32 32 H 1.09009 * 109.47059 * 60.00164 * 1 2 3 33 33 H 1.07997 * 120.02182 * 359.95251 * 4 3 2 34 34 H 1.07992 * 119.97032 * 180.02562 * 5 4 3 35 35 H 0.96699 * 114.00507 * 299.99720 * 9 7 6 36 36 H 1.09002 * 109.47082 * 64.99593 * 10 7 6 37 37 H 1.08996 * 109.46748 * 304.99831 * 10 7 6 38 38 H 0.97004 * 120.00368 * 359.97438 * 11 10 7 39 39 H 1.08001 * 119.95389 * 0.02562 * 15 14 12 40 40 H 1.08005 * 119.66008 * 179.97438 * 16 15 14 41 41 H 1.08002 * 119.71692 * 180.02562 * 17 16 15 42 42 H 1.07999 * 120.06005 * 179.73002 * 18 17 16 43 43 H 0.97004 * 119.99993 * 179.97438 * 23 22 20 44 44 H 1.08000 * 119.97401 * 179.70299 * 28 6 5 45 45 H 1.08003 * 120.02332 * 180.28182 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5167 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 3.9863 5.0183 -0.0028 8 1 5.0118 4.9039 0.3484 9 8 3.2833 5.9119 0.8629 10 6 3.9941 5.5855 -1.4238 11 7 4.7624 6.8327 -1.4475 12 6 4.9053 7.5143 -2.6014 13 8 4.3968 7.0937 -3.6230 14 6 5.6779 8.7696 -2.6252 15 6 6.1596 9.3201 -1.4406 16 6 6.8832 10.4976 -1.4675 17 6 7.1394 11.1441 -2.6688 18 6 6.6769 10.6243 -3.8559 19 6 5.9379 9.4269 -3.8562 20 6 5.4593 8.8866 -5.0662 21 1 5.4035 7.8157 -5.1946 22 6 5.0552 9.7395 -6.1039 23 7 4.9499 11.0238 -5.8902 24 14 4.6676 9.0385 -7.7915 25 1 3.2282 8.6802 -7.8600 26 1 4.9753 10.0529 -8.8314 27 1 5.4914 7.8251 -8.0247 28 6 1.9212 3.6047 0.0042 29 6 1.2916 2.3750 -0.0009 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 4.0208 0.3797 -0.0002 34 1 5.1346 2.5747 -0.0019 35 1 2.3619 6.0610 0.6101 36 1 2.9704 5.7832 -1.7417 37 1 4.4518 4.8639 -2.1004 38 1 5.1677 7.1683 -0.6326 39 1 5.9677 8.8264 -0.4994 40 1 7.2532 10.9187 -0.5443 41 1 7.7068 12.0631 -2.6719 42 1 6.8774 11.1365 -4.7854 43 1 4.6708 11.6136 -6.6079 44 1 1.3344 4.5113 0.0086 45 1 0.2130 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362446036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = -99.827712 kcal Electronic energy + Delta-G solvation = -28245.875581 eV Core-core repulsion = 24192.341631 eV Total energy + Delta-G solvation = -4053.533950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30830 -40.69217 -39.47480 -38.49055 -37.36794 -35.72494 -35.00753 -32.36641 -32.08233 -31.75148 -31.28205 -29.05287 -27.95312 -27.14073 -24.86428 -23.76552 -23.34236 -22.59621 -22.12264 -21.01470 -19.42829 -19.25267 -18.29878 -17.95762 -17.47055 -17.11202 -16.67529 -16.53064 -16.28617 -16.08887 -15.86673 -15.49533 -15.32628 -15.12542 -14.80396 -14.58664 -14.48089 -14.33183 -13.97361 -13.76667 -13.56743 -13.44519 -13.23472 -12.85738 -12.82415 -12.76386 -12.50333 -12.40463 -12.28230 -11.89987 -11.84756 -11.74225 -11.49110 -11.22367 -11.13219 -10.26750 -10.01912 -9.94632 -9.37428 -9.21717 -9.14579 -8.66495 -6.34774 0.31877 0.34933 0.53714 1.02739 1.33317 1.46586 1.50069 2.21133 2.33851 2.36789 2.41403 2.73361 2.80199 3.44992 3.70017 3.74167 3.76961 3.88073 3.93101 4.13163 4.27716 4.35997 4.36956 4.38226 4.41136 4.49009 4.60356 4.63264 4.71723 4.74380 4.87023 4.96399 5.04350 5.11712 5.20673 5.25954 5.32297 5.35924 5.56325 5.63409 5.65546 5.74403 5.84617 6.07004 6.12436 6.35923 6.39994 6.64239 6.67921 6.81472 6.93731 7.02579 7.67687 8.31137 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.002461 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.168157 B =11372.748847 C =12893.530224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.164 4.164 5 C -0.070 4.070 6 C -0.161 4.161 7 C 0.161 3.839 8 H 0.123 0.877 9 O -0.558 6.558 10 C 0.101 3.899 11 N -0.723 5.723 12 C 0.559 3.441 13 O -0.581 6.581 14 C -0.280 4.280 15 C -0.053 4.053 16 C -0.237 4.237 17 C -0.092 4.092 18 C -0.178 4.178 19 C 0.113 3.887 20 C -0.456 4.456 21 H 0.081 0.919 22 C 0.031 3.969 23 N -0.824 5.824 24 Si 0.979 3.021 25 H -0.271 1.271 26 H -0.257 1.257 27 H -0.264 1.264 28 C -0.075 4.075 29 C -0.210 4.210 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.386 0.614 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.408 0.592 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.289 0.711 44 H 0.141 0.859 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 -15.793 13.494 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.070 3.930 4 C -0.182 4.182 5 C -0.088 4.088 6 C -0.162 4.162 7 C 0.101 3.899 8 H 0.141 0.859 9 O -0.366 6.366 10 C -0.024 4.024 11 N -0.377 5.377 12 C 0.352 3.648 13 O -0.462 6.462 14 C -0.285 4.285 15 C -0.072 4.072 16 C -0.256 4.256 17 C -0.111 4.111 18 C -0.197 4.197 19 C 0.110 3.890 20 C -0.485 4.485 21 H 0.099 0.901 22 C -0.184 4.184 23 N -0.450 5.450 24 Si 0.800 3.200 25 H -0.196 1.196 26 H -0.181 1.181 27 H -0.188 1.188 28 C -0.093 4.093 29 C -0.229 4.229 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.236 0.764 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.245 0.755 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.159 0.841 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.384 -16.068 12.971 21.614 hybrid contribution -0.922 0.172 -1.021 1.386 sum -7.306 -15.896 11.950 21.186 Atomic orbital electron populations 1.23338 0.76508 1.05586 1.02206 1.86042 1.23433 1.26878 1.88590 1.19309 0.92837 0.84720 0.96168 1.20651 0.91745 0.99208 1.06637 1.21065 1.00992 0.90587 0.96202 1.20314 0.94589 0.95437 1.05861 1.20794 0.96966 0.84846 0.87269 0.85891 1.86596 1.29562 1.66361 1.54072 1.21965 0.96235 0.86025 0.98134 1.45670 1.56153 1.24907 1.10967 1.18443 0.79435 0.84140 0.82738 1.90655 1.50911 1.70274 1.34384 1.19841 1.12845 1.01118 0.94690 1.21074 0.95041 0.95319 0.95742 1.20807 1.08427 0.98764 0.97573 1.21181 0.98283 0.98714 0.92882 1.21298 1.01861 0.98994 0.97542 1.17880 0.87898 0.91129 0.92126 1.20097 1.35496 0.95304 0.97607 0.90121 1.26793 0.93086 0.94649 1.03864 1.69743 1.34736 1.05132 1.35411 0.85260 0.79114 0.79183 0.76428 1.19612 1.18068 1.18760 1.20956 0.93889 0.98139 0.96328 1.21429 1.01166 0.91827 1.08469 0.86308 0.91582 0.92013 0.84085 0.83352 0.76424 0.92550 0.92093 0.75492 0.85051 0.84980 0.86236 0.88211 0.90055 0.84139 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.18 10.50 -92.36 -0.97 -7.15 16 3 C 0.11 2.27 6.69 22.51 0.15 2.42 16 4 C -0.16 -3.15 9.99 22.37 0.22 -2.93 16 5 C -0.07 -1.31 9.66 22.25 0.21 -1.10 16 6 C -0.16 -3.16 4.97 -19.85 -0.10 -3.25 16 7 C 0.16 3.30 3.24 29.85 0.10 3.40 16 8 H 0.12 2.28 8.00 -2.39 -0.02 2.26 16 9 O -0.56 -11.43 13.13 -148.98 -1.96 -13.39 16 10 C 0.10 2.85 5.29 86.38 0.46 3.31 16 11 N -0.72 -24.56 5.45 -466.36 -2.54 -27.10 16 12 C 0.56 26.17 7.72 86.67 0.67 26.84 16 13 O -0.58 -31.81 13.60 -4.08 -0.06 -31.86 16 14 C -0.28 -13.79 5.92 -19.70 -0.12 -13.91 16 15 C -0.05 -2.15 9.52 22.50 0.21 -1.94 16 16 C -0.24 -9.32 10.03 22.41 0.22 -9.10 16 17 C -0.09 -4.03 10.01 22.26 0.22 -3.80 16 18 C -0.18 -9.26 8.63 22.72 0.20 -9.06 16 19 C 0.11 6.33 5.51 -21.11 -0.12 6.21 16 20 C -0.46 -26.58 7.67 23.41 0.18 -26.40 16 21 H 0.08 4.94 5.93 -2.91 -0.02 4.92 16 22 C 0.03 1.65 5.25 85.37 0.45 2.10 16 23 N -0.82 -44.59 11.14 21.88 0.24 -44.35 16 24 Si 0.98 42.20 29.57 68.60 2.03 44.23 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 27 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 28 C -0.08 -1.36 9.32 22.25 0.21 -1.15 16 29 C -0.21 -3.70 9.04 22.37 0.20 -3.50 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 32 H 0.06 0.57 7.66 -2.38 -0.02 0.55 16 33 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.15 2.16 8.03 -2.91 -0.02 2.13 16 35 H 0.39 5.94 7.49 -74.06 -0.55 5.39 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.41 11.77 6.54 -92.71 -0.61 11.16 16 39 H 0.13 4.16 6.44 -2.91 -0.02 4.14 16 40 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.10 5.43 6.59 -2.91 -0.02 5.41 16 43 H 0.29 14.10 8.29 -92.71 -0.77 13.33 16 44 H 0.14 1.97 6.77 -2.91 -0.02 1.95 16 45 H 0.15 1.89 6.30 -2.91 -0.02 1.87 16 Total: -1.00 -73.50 377.27 1.13 -72.37 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.11 Total: 37.82 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 4.49 Total: -30.57 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -2.30 Total: -71.45 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -2.98 Total: -52.40 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -73.50 1.13 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362446036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.456 kcal (2) G-P(sol) polarization free energy of solvation -73.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds