Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 116.99431 * 2 1 4 4 C 1.38756 * 120.05772 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.94352 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05718 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.11079 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.97089 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47091 * 90.00010 * 8 7 6 10 10 H 1.08998 * 109.47263 * 305.00246 * 9 8 7 11 11 O 1.42905 * 109.47146 * 64.99835 * 9 8 7 12 12 C 1.50703 * 109.47277 * 184.99669 * 9 8 7 13 13 O 1.21279 * 120.00297 * 245.00283 * 12 9 8 14 14 N 1.34785 * 119.99429 * 65.27936 * 12 9 8 15 15 C 1.39938 * 119.99594 * 174.61956 * 14 12 9 16 16 C 1.39287 * 119.94835 * 325.54738 * 15 14 12 17 17 C 1.38486 * 120.42966 * 179.76524 * 16 15 14 18 18 C 1.37685 * 120.31987 * 0.50668 * 17 16 15 19 19 C 1.40739 * 119.88422 * 359.74892 * 18 17 16 20 20 C 1.41406 * 120.20741 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00674 * 25.12643 * 20 19 18 22 22 C 1.39932 * 119.99813 * 205.13154 * 20 19 18 23 23 N 1.30828 * 120.00407 * 16.78457 * 22 20 19 24 24 Si 1.86802 * 119.99954 * 196.79044 * 22 20 19 25 25 H 1.48499 * 109.47273 * 89.99847 * 24 22 20 26 26 H 1.48506 * 109.47072 * 209.99724 * 24 22 20 27 27 H 1.48503 * 109.46993 * 329.99555 * 24 22 20 28 28 C 1.38241 * 119.94863 * 145.81522 * 15 14 12 29 29 C 1.38159 * 120.05255 * 0.23161 * 7 6 5 30 30 H 1.08994 * 109.47451 * 299.99964 * 1 2 3 31 31 H 1.08998 * 109.47679 * 60.00354 * 1 2 3 32 32 H 1.09009 * 109.46909 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.02781 * 0.03983 * 4 3 2 34 34 H 1.07998 * 119.97574 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.94712 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.47449 * 330.00138 * 8 7 6 37 37 H 1.08995 * 109.47235 * 209.99887 * 8 7 6 38 38 H 0.96702 * 113.99524 * 59.99765 * 11 9 8 39 39 H 0.96998 * 120.00034 * 354.61188 * 14 12 9 40 40 H 1.08005 * 119.78970 * 0.02562 * 16 15 14 41 41 H 1.08002 * 119.84004 * 180.25421 * 17 16 15 42 42 H 1.08003 * 120.05417 * 179.76811 * 18 17 16 43 43 H 0.96997 * 120.00726 * 180.02562 * 23 22 20 44 44 H 1.08005 * 120.15790 * 359.96603 * 28 15 14 45 45 H 1.08006 * 120.02402 * 179.73675 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9206 3.6048 -0.0011 6 6 3.3016 3.6759 -0.0016 7 6 4.0558 2.5172 -0.0021 8 6 5.5606 2.5984 -0.0033 9 6 6.0709 2.6260 1.4388 10 1 5.5920 3.4431 1.9782 11 8 5.7597 1.3863 2.0780 12 6 7.5640 2.8305 1.4395 13 8 8.2955 1.9572 1.8557 14 7 8.0861 3.9861 0.9827 15 6 9.4615 4.2219 1.0869 16 6 10.1692 3.7360 2.1837 17 6 11.5314 3.9594 2.2944 18 6 12.1996 4.6739 1.3256 19 6 11.4967 5.1756 0.2143 20 6 12.1762 5.9099 -0.7851 21 1 13.2347 5.7605 -0.9394 22 6 11.4773 6.8302 -1.5741 23 7 10.3009 7.2577 -1.1935 24 14 12.2239 7.4484 -3.1709 25 1 11.8145 6.5575 -4.2863 26 1 11.7462 8.8287 -3.4390 27 1 13.7046 7.4504 -3.0569 28 6 10.1147 4.9415 0.1037 29 6 3.4310 1.2850 -0.0070 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 0.2126 2.3203 -0.0003 34 1 1.3337 4.5114 -0.0019 35 1 3.7919 4.6382 -0.0024 36 1 5.8751 3.5067 -0.5174 37 1 5.9709 1.7293 -0.5174 38 1 6.1537 0.6136 1.6505 39 1 7.5084 4.6542 0.5817 40 1 9.6531 3.1778 2.9508 41 1 12.0716 3.5747 3.1469 42 1 13.2614 4.8488 1.4181 43 1 9.8162 7.8954 -1.7405 44 1 9.5661 5.3220 -0.7453 45 1 4.0206 0.3801 -0.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362851521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -82.571803 kcal Electronic energy + Delta-G solvation = -28249.230212 eV Core-core repulsion = 24196.444535 eV Total energy + Delta-G solvation = -4052.785678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51740 -39.93565 -38.13882 -37.38775 -36.20098 -34.37465 -33.42241 -32.73110 -30.83975 -29.69216 -29.37991 -27.96732 -27.48116 -25.28884 -24.67179 -22.76490 -21.53426 -21.16876 -21.10198 -19.70620 -18.23954 -17.55267 -17.49476 -16.58246 -16.28548 -16.10841 -15.94842 -15.77497 -15.47883 -14.83348 -14.71709 -14.35119 -14.22993 -14.00304 -13.75278 -13.35045 -13.06266 -12.87606 -12.77069 -12.41396 -12.28529 -12.09749 -11.83068 -11.71888 -11.65037 -11.39791 -11.24283 -11.17005 -11.06468 -10.86557 -10.73856 -10.55313 -10.03508 -9.77073 -9.46381 -9.22091 -9.05458 -8.84160 -8.39489 -7.41427 -7.06034 -6.73091 -4.40260 1.08707 1.25801 2.47364 2.81441 2.99067 3.05033 3.08615 3.14498 3.26430 3.48896 3.61960 3.90839 4.20511 4.51316 4.56472 4.60230 4.74292 4.80074 4.82107 4.84991 4.86957 5.05135 5.12507 5.15972 5.27834 5.36704 5.51404 5.64139 5.70861 5.84201 6.07783 6.21764 6.24805 6.39708 6.53550 6.60489 6.64562 6.84034 7.01326 7.03011 7.15569 7.21593 7.46790 7.57215 7.65597 7.89816 7.99621 8.10029 8.28175 8.50003 8.67908 8.85748 8.92200 10.15825 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.002378 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.262800 B =11772.472151 C =13217.733881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.080 4.080 6 C -0.153 4.153 7 C -0.034 4.034 8 C -0.112 4.112 9 C 0.102 3.898 10 H 0.124 0.876 11 O -0.533 6.533 12 C 0.477 3.523 13 O -0.517 6.517 14 N -0.660 5.660 15 C 0.142 3.858 16 C -0.226 4.226 17 C -0.086 4.086 18 C -0.227 4.227 19 C 0.119 3.881 20 C -0.463 4.463 21 H 0.078 0.922 22 C 0.077 3.923 23 N -0.800 5.800 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.180 4.180 29 C -0.134 4.134 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.381 0.619 39 H 0.402 0.598 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.279 0.721 44 H 0.123 0.877 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.872 -6.482 -1.080 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.232 4.232 5 C -0.098 4.098 6 C -0.171 4.171 7 C -0.034 4.034 8 C -0.150 4.150 9 C 0.039 3.961 10 H 0.142 0.858 11 O -0.338 6.338 12 C 0.262 3.738 13 O -0.392 6.392 14 N -0.305 5.305 15 C 0.051 3.949 16 C -0.247 4.247 17 C -0.105 4.105 18 C -0.247 4.247 19 C 0.116 3.884 20 C -0.493 4.493 21 H 0.097 0.903 22 C -0.140 4.140 23 N -0.426 5.426 24 Si 0.732 3.268 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.202 4.202 29 C -0.152 4.152 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.230 0.770 39 H 0.237 0.763 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.141 0.859 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.828 -6.774 -0.419 20.957 hybrid contribution -0.030 0.624 -1.305 1.447 sum -19.858 -6.150 -1.724 20.860 Atomic orbital electron populations 1.23038 0.78520 1.03869 1.01271 1.86078 1.21273 1.27034 1.88789 1.18992 0.92298 0.84102 0.96563 1.21207 0.99873 0.92507 1.09578 1.20895 0.94550 0.96944 0.97396 1.21012 0.93827 0.98120 1.04146 1.19405 0.94647 0.92397 0.96999 1.21336 0.91863 1.05186 0.96651 1.21815 0.90913 0.89773 0.93613 0.85822 1.86598 1.74865 1.15190 1.57101 1.21477 0.91246 0.82540 0.78532 1.90727 1.61033 1.42218 1.45271 1.43540 1.08368 1.18580 1.59989 1.17612 0.81049 1.00433 0.95826 1.20300 0.94560 1.10429 0.99460 1.20429 0.93746 0.98496 0.97827 1.21052 0.98736 1.08083 0.96789 1.17371 0.91158 0.89194 0.90641 1.19546 0.96628 1.18742 1.14343 0.90338 1.25872 0.94557 0.95037 0.98556 1.69806 1.12762 1.24292 1.35697 0.86321 0.80538 0.78144 0.81763 1.19346 1.20370 1.18631 1.21069 0.95706 1.04898 0.98518 1.20258 0.91195 0.98226 1.05560 0.92676 0.92748 0.88301 0.85723 0.85756 0.85553 0.88800 0.89486 0.76993 0.76319 0.88150 0.88995 0.88822 0.91038 0.85924 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.29 10.50 -19.42 -0.20 -3.49 16 3 C 0.13 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.21 -1.99 9.04 -39.43 -0.36 -2.35 16 5 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 6 C -0.15 -1.49 9.70 -39.56 -0.38 -1.87 16 7 C -0.03 -0.36 4.96 -104.65 -0.52 -0.88 16 8 C -0.11 -1.17 4.99 -27.88 -0.14 -1.31 16 9 C 0.10 1.28 3.37 -27.88 -0.09 1.19 16 10 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 11 O -0.53 -7.12 12.50 -55.09 -0.69 -7.81 16 12 C 0.48 8.12 6.89 -10.98 -0.08 8.04 16 13 O -0.52 -10.88 14.07 -14.30 -0.20 -11.08 16 14 N -0.66 -11.83 5.27 -9.91 -0.05 -11.88 16 15 C 0.14 3.26 6.25 -83.77 -0.52 2.74 16 16 C -0.23 -5.38 8.66 -39.10 -0.34 -5.72 16 17 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 18 C -0.23 -5.61 9.79 -38.84 -0.38 -5.99 16 19 C 0.12 3.14 5.57 -106.85 -0.59 2.54 16 20 C -0.46 -12.03 9.05 -37.74 -0.34 -12.37 16 21 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 22 C 0.08 1.86 5.16 -17.35 -0.09 1.77 16 23 N -0.80 -19.65 10.94 55.55 0.61 -19.04 16 24 Si 0.91 18.22 29.59 -169.99 -5.03 13.19 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 28 C -0.18 -4.50 8.60 -38.69 -0.33 -4.83 16 29 C -0.13 -1.49 9.35 -39.44 -0.37 -1.86 16 30 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 31 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.12 0.88 6.30 -52.49 -0.33 0.55 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.09 0.89 7.59 -51.93 -0.39 0.50 16 37 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.38 4.31 8.79 45.56 0.40 4.71 16 39 H 0.40 5.93 8.37 -40.82 -0.34 5.59 16 40 H 0.10 2.38 6.48 -52.48 -0.34 2.04 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 43 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 44 H 0.12 3.06 6.17 -52.48 -0.32 2.74 16 45 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -31.92 381.99 -9.47 -41.39 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -5.05 Total: 15.13 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -4.60 Total: -22.16 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.56 Total: -30.92 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.09 Total: -22.38 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.92 -9.47 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362851521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.182 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds