Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86797 * 120.00157 * 2 1 4 4 H 1.48502 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47113 * 300.00052 * 3 2 1 6 6 H 1.48497 * 109.47449 * 59.99965 * 3 2 1 7 7 C 1.39946 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00428 * 197.86002 * 7 2 1 9 9 C 1.41395 * 119.99907 * 17.84883 * 7 2 1 10 10 C 1.40719 * 120.24700 * 204.38013 * 9 7 2 11 11 C 1.37612 * 119.74287 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25367 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75318 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47323 * 89.99444 * 13 12 11 15 15 C 1.34777 * 120.00442 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99696 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00662 * 180.02562 * 15 14 13 18 18 O 1.42898 * 109.47344 * 180.02562 * 17 15 14 19 19 C 1.35898 * 116.99859 * 179.97438 * 18 17 15 20 20 C 1.38731 * 120.05813 * 179.97438 * 19 18 17 21 21 C 1.38145 * 119.94576 * 180.02562 * 20 19 18 22 22 C 1.38261 * 120.05443 * 0.02913 * 21 20 19 23 23 C 1.50706 * 119.93933 * 179.97438 * 22 21 20 24 24 O 1.42892 * 109.46956 * 90.00289 * 23 22 21 25 25 C 1.38265 * 120.11388 * 0.24870 * 22 21 20 26 26 C 1.38147 * 120.05267 * 359.45406 * 25 22 21 27 27 C 1.38632 * 120.49699 * 0.25188 * 12 11 10 28 28 C 1.37614 * 120.25321 * 359.44552 * 27 12 11 29 29 H 0.97004 * 120.00370 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.12484 * 0.02562 * 10 9 7 31 31 H 1.08008 * 119.87566 * 180.02562 * 11 10 9 32 32 H 1.09005 * 109.46922 * 329.99952 * 13 12 11 33 33 H 1.08999 * 109.47320 * 210.00044 * 13 12 11 34 34 H 0.97000 * 120.00033 * 0.02562 * 14 13 12 35 35 H 1.08992 * 109.46772 * 59.99924 * 17 15 14 36 36 H 1.08999 * 109.46941 * 300.00559 * 17 15 14 37 37 H 1.07999 * 120.02321 * 0.02562 * 20 19 18 38 38 H 1.08000 * 119.96770 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47146 * 330.00004 * 23 22 21 40 40 H 1.09004 * 109.46534 * 209.99625 * 23 22 21 41 41 H 0.96702 * 114.00388 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.97050 * 179.70279 * 25 22 21 43 43 H 1.08003 * 120.02152 * 180.25312 * 26 25 22 44 44 H 1.08003 * 119.87150 * 179.70809 * 27 12 11 45 45 H 1.07998 * 120.13490 * 180.27590 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4068 -0.3764 10 6 1.8258 -3.6500 0.0822 11 6 1.1798 -4.8065 -0.2905 12 6 0.0666 -4.7501 -1.1148 13 6 -0.6319 -6.0236 -1.5164 14 7 -1.6748 -6.3384 -0.5370 15 6 -2.4349 -7.4404 -0.6924 16 8 -2.2552 -8.1719 -1.6431 17 6 -3.5082 -7.7639 0.3148 18 8 -4.1704 -8.9716 -0.0660 19 6 -5.1722 -9.4071 0.7424 20 6 -5.8583 -10.5724 0.4324 21 6 -6.8767 -11.0127 1.2555 22 6 -7.2127 -10.2928 2.3871 23 6 -8.3245 -10.7752 3.2829 24 8 -7.7873 -11.6417 4.2842 25 6 -6.5343 -9.1281 2.6951 26 6 -5.5111 -8.6868 1.8786 27 6 -0.4055 -3.5314 -1.5772 28 6 0.2209 -2.3617 -1.2124 29 1 -0.4851 0.8400 -0.0004 30 1 2.6930 -3.6962 0.7241 31 1 1.5413 -5.7618 0.0606 32 1 0.0910 -6.8388 -1.5520 33 1 -1.0838 -5.8956 -2.5000 34 1 -1.8188 -5.7532 0.2231 35 1 -4.2307 -6.9486 0.3503 36 1 -3.0565 -7.8922 1.2984 37 1 -5.5965 -11.1348 -0.4516 38 1 -7.4113 -11.9196 1.0144 39 1 -9.0599 -11.3180 2.6891 40 1 -8.8027 -9.9203 3.7609 41 1 -8.4480 -11.9905 4.8981 42 1 -6.8019 -8.5650 3.5770 43 1 -4.9788 -7.7791 2.1219 44 1 -1.2708 -3.4996 -2.2228 45 1 -0.1511 -1.4130 -1.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362946065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -84.760292 kcal Electronic energy + Delta-G solvation = -26902.416719 eV Core-core repulsion = 22849.536141 eV Total energy + Delta-G solvation = -4052.880578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58817 -39.39870 -38.14297 -37.62406 -36.51394 -34.78737 -33.50987 -31.59514 -31.17071 -30.61741 -29.44178 -28.78738 -26.65810 -25.62460 -23.79012 -22.99758 -21.51812 -21.13620 -20.35346 -20.15143 -18.55402 -17.83437 -17.44770 -17.33906 -16.48669 -16.13890 -15.97549 -15.54267 -15.35915 -14.78413 -14.67788 -14.46874 -14.15778 -13.84616 -13.71712 -13.61083 -13.44720 -13.25953 -12.78158 -12.65487 -12.56468 -12.09716 -12.01167 -11.75261 -11.59952 -11.22790 -11.21301 -11.15475 -11.08465 -10.78091 -10.50106 -10.47786 -9.87370 -9.68135 -9.53960 -9.28216 -9.27717 -8.78199 -8.43820 -7.63252 -7.51229 -6.92653 -4.51918 1.03913 1.08424 2.35881 2.68479 2.70787 2.93070 2.99198 3.03644 3.06701 3.35971 3.78857 3.82039 4.12117 4.41883 4.48909 4.54587 4.66547 4.74648 4.86595 4.89736 4.90219 4.96111 5.09131 5.27562 5.39730 5.54170 5.73032 5.73910 5.84157 5.94494 6.06357 6.17394 6.22496 6.28428 6.28820 6.44433 6.69345 6.81688 6.92380 7.11770 7.12584 7.20645 7.20757 7.45696 7.60958 7.79736 7.90605 7.95516 8.13809 8.34724 8.48592 8.73459 8.80920 10.01271 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.001642 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.762009 B =17049.292543 C =18031.943987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.069 4.069 12 C -0.248 4.248 13 C 0.187 3.813 14 N -0.713 5.713 15 C 0.509 3.491 16 O -0.530 6.530 17 C 0.039 3.961 18 O -0.287 6.287 19 C 0.140 3.860 20 C -0.152 4.152 21 C -0.059 4.059 22 C -0.139 4.139 23 C 0.122 3.878 24 O -0.569 6.569 25 C -0.057 4.057 26 C -0.214 4.214 27 C -0.081 4.081 28 C -0.169 4.169 29 H 0.282 0.718 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.402 0.598 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.378 0.622 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.088 0.912 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.522 -13.885 6.345 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.250 4.250 13 C 0.065 3.935 14 N -0.365 5.365 15 C 0.293 3.707 16 O -0.406 6.406 17 C -0.040 4.040 18 O -0.199 6.199 19 C 0.094 3.906 20 C -0.171 4.171 21 C -0.077 4.077 22 C -0.139 4.139 23 C 0.045 3.955 24 O -0.375 6.375 25 C -0.075 4.075 26 C -0.232 4.232 27 C -0.100 4.100 28 C -0.189 4.189 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.237 0.763 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.225 0.775 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.106 0.894 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.945 -14.193 5.149 21.244 hybrid contribution -0.288 1.261 0.951 1.606 sum -15.233 -12.932 6.100 20.893 Atomic orbital electron populations 1.69817 1.07679 1.29432 1.34211 1.25957 0.94759 1.01545 0.92069 0.86246 0.81073 0.80701 0.78686 1.18270 1.19570 1.19889 1.19709 0.98261 0.91265 1.39310 0.90175 1.17693 0.90864 0.92082 0.88010 1.20978 1.03982 0.92787 1.07172 1.20413 0.95064 0.96543 0.96742 1.18961 1.02195 0.92632 1.11231 1.19989 0.87767 0.95273 0.90421 1.46427 1.35821 1.24966 1.29324 1.19991 0.82426 0.81920 0.86403 1.90727 1.69216 1.49072 1.31606 1.22583 0.95334 0.87314 0.98768 1.86174 1.45705 1.40044 1.48007 1.19146 0.88121 0.93684 0.89655 1.20446 0.98001 0.96209 1.02452 1.20829 0.95414 0.98301 0.93184 1.19493 1.00567 0.96858 0.96982 1.20902 0.92911 0.92849 0.88824 1.86594 1.39125 1.66596 1.45161 1.20820 0.93589 0.95192 0.97919 1.21299 1.02274 1.02703 0.96957 1.20563 0.98069 0.92542 0.98783 1.21313 0.99539 0.96778 1.01219 0.90703 0.88851 0.89322 0.92181 0.92133 0.76303 0.88903 0.88933 0.84746 0.85286 0.92854 0.92872 0.77456 0.85635 0.85006 0.89353 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.18 10.95 55.55 0.61 -18.57 16 2 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.71 29.59 -169.99 -5.03 12.68 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.46 -11.48 9.05 -37.74 -0.34 -11.82 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.12 2.92 5.58 -106.82 -0.60 2.32 16 10 C -0.23 -5.28 9.80 -38.87 -0.38 -5.66 16 11 C -0.07 -1.42 9.67 -39.66 -0.38 -1.81 16 12 C -0.25 -4.95 5.27 -104.33 -0.55 -5.50 16 13 C 0.19 3.25 5.79 -5.20 -0.03 3.22 16 14 N -0.71 -10.74 5.55 -61.47 -0.34 -11.08 16 15 C 0.51 7.86 7.91 -10.99 -0.09 7.78 16 16 O -0.53 -10.43 16.50 -14.36 -0.24 -10.66 16 17 C 0.04 0.45 5.22 36.00 0.19 0.64 16 18 O -0.29 -4.01 9.67 -39.33 -0.38 -4.39 16 19 C 0.14 1.68 6.69 -39.22 -0.26 1.42 16 20 C -0.15 -1.67 9.99 -39.43 -0.39 -2.06 16 21 C -0.06 -0.55 9.69 -39.61 -0.38 -0.94 16 22 C -0.14 -1.29 5.51 -104.60 -0.58 -1.86 16 23 C 0.12 0.83 7.17 36.01 0.26 1.08 16 24 O -0.57 -4.38 13.64 -35.23 -0.48 -4.86 16 25 C -0.06 -0.53 9.69 -39.60 -0.38 -0.92 16 26 C -0.21 -2.18 9.04 -39.43 -0.36 -2.54 16 27 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 28 C -0.17 -4.11 8.70 -38.87 -0.34 -4.45 16 29 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 30 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.06 1.05 8.08 -51.93 -0.42 0.64 16 33 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.40 5.39 8.46 -40.82 -0.35 5.04 16 35 H 0.09 0.87 7.66 -51.93 -0.40 0.47 16 36 H 0.09 0.87 7.66 -51.93 -0.40 0.47 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 40 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 41 H 0.38 1.01 9.12 45.56 0.42 1.43 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.13 1.10 6.30 -52.48 -0.33 0.76 16 44 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 45 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -31.23 389.03 -10.23 -41.47 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.14 Total: 11.06 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -5.09 Total: -21.50 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 0.27 Total: -29.65 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -1.10 Total: -19.92 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.23 -10.23 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362946065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.294 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds