Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86797 * 120.00157 * 2 1 4 4 H 1.48502 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47113 * 300.00052 * 3 2 1 6 6 H 1.48497 * 109.47449 * 59.99965 * 3 2 1 7 7 C 1.39946 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00428 * 197.86002 * 7 2 1 9 9 C 1.41395 * 119.99907 * 17.84883 * 7 2 1 10 10 C 1.40719 * 120.24700 * 204.38013 * 9 7 2 11 11 C 1.37612 * 119.74287 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25367 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75318 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47323 * 89.99444 * 13 12 11 15 15 C 1.34777 * 120.00442 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99696 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00662 * 180.02562 * 15 14 13 18 18 O 1.42898 * 109.47344 * 180.02562 * 17 15 14 19 19 C 1.35898 * 116.99859 * 179.97438 * 18 17 15 20 20 C 1.38731 * 120.05813 * 179.97438 * 19 18 17 21 21 C 1.38145 * 119.94576 * 180.02562 * 20 19 18 22 22 C 1.38261 * 120.05443 * 0.02913 * 21 20 19 23 23 C 1.50706 * 119.93933 * 179.97438 * 22 21 20 24 24 O 1.42892 * 109.46956 * 90.00289 * 23 22 21 25 25 C 1.38265 * 120.11388 * 0.24870 * 22 21 20 26 26 C 1.38147 * 120.05267 * 359.45406 * 25 22 21 27 27 C 1.38632 * 120.49699 * 0.25188 * 12 11 10 28 28 C 1.37614 * 120.25321 * 359.44552 * 27 12 11 29 29 H 0.97004 * 120.00370 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.12484 * 0.02562 * 10 9 7 31 31 H 1.08008 * 119.87566 * 180.02562 * 11 10 9 32 32 H 1.09005 * 109.46922 * 329.99952 * 13 12 11 33 33 H 1.08999 * 109.47320 * 210.00044 * 13 12 11 34 34 H 0.97000 * 120.00033 * 0.02562 * 14 13 12 35 35 H 1.08992 * 109.46772 * 59.99924 * 17 15 14 36 36 H 1.08999 * 109.46941 * 300.00559 * 17 15 14 37 37 H 1.07999 * 120.02321 * 0.02562 * 20 19 18 38 38 H 1.08000 * 119.96770 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47146 * 330.00004 * 23 22 21 40 40 H 1.09004 * 109.46534 * 209.99625 * 23 22 21 41 41 H 0.96702 * 114.00388 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.97050 * 179.70279 * 25 22 21 43 43 H 1.08003 * 120.02152 * 180.25312 * 26 25 22 44 44 H 1.08003 * 119.87150 * 179.70809 * 27 12 11 45 45 H 1.07998 * 120.13490 * 180.27590 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4068 -0.3764 10 6 1.8258 -3.6500 0.0822 11 6 1.1798 -4.8065 -0.2905 12 6 0.0666 -4.7501 -1.1148 13 6 -0.6319 -6.0236 -1.5164 14 7 -1.6748 -6.3384 -0.5370 15 6 -2.4349 -7.4404 -0.6924 16 8 -2.2552 -8.1719 -1.6431 17 6 -3.5082 -7.7639 0.3148 18 8 -4.1704 -8.9716 -0.0660 19 6 -5.1722 -9.4071 0.7424 20 6 -5.8583 -10.5724 0.4324 21 6 -6.8767 -11.0127 1.2555 22 6 -7.2127 -10.2928 2.3871 23 6 -8.3245 -10.7752 3.2829 24 8 -7.7873 -11.6417 4.2842 25 6 -6.5343 -9.1281 2.6951 26 6 -5.5111 -8.6868 1.8786 27 6 -0.4055 -3.5314 -1.5772 28 6 0.2209 -2.3617 -1.2124 29 1 -0.4851 0.8400 -0.0004 30 1 2.6930 -3.6962 0.7241 31 1 1.5413 -5.7618 0.0606 32 1 0.0910 -6.8388 -1.5520 33 1 -1.0838 -5.8956 -2.5000 34 1 -1.8188 -5.7532 0.2231 35 1 -4.2307 -6.9486 0.3503 36 1 -3.0565 -7.8922 1.2984 37 1 -5.5965 -11.1348 -0.4516 38 1 -7.4113 -11.9196 1.0144 39 1 -9.0599 -11.3180 2.6891 40 1 -8.8027 -9.9203 3.7609 41 1 -8.4480 -11.9905 4.8981 42 1 -6.8019 -8.5650 3.5770 43 1 -4.9788 -7.7791 2.1219 44 1 -1.2708 -3.4996 -2.2228 45 1 -0.1511 -1.4130 -1.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362946065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = -104.212595 kcal Electronic energy + Delta-G solvation = -26903.260234 eV Core-core repulsion = 22849.536141 eV Total energy + Delta-G solvation = -4053.724093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49292 -40.54464 -39.47155 -38.78279 -37.12784 -36.33839 -35.12324 -32.51645 -32.07002 -31.84062 -31.19194 -29.97906 -28.12056 -26.32679 -25.29379 -23.83726 -22.90772 -22.29567 -21.83838 -21.51296 -19.40138 -19.24742 -18.48416 -18.31258 -17.47139 -17.19867 -17.15875 -16.69396 -16.48418 -16.01824 -15.82471 -15.50993 -15.46291 -15.22723 -15.00452 -14.64160 -14.25128 -14.20059 -14.01720 -13.83603 -13.77141 -13.55048 -13.47386 -13.28984 -12.83953 -12.72413 -12.51444 -12.27104 -12.10326 -11.96056 -11.90018 -11.52733 -11.30373 -11.12631 -10.95919 -10.91768 -10.12511 -10.00208 -9.40613 -9.29456 -9.21943 -8.68204 -6.37703 0.30650 0.35451 0.80171 1.13236 1.38443 1.42218 1.47947 1.53255 1.67565 2.19487 2.59202 2.65941 2.83548 3.56782 3.64043 3.74090 3.84265 3.88573 4.02657 4.06136 4.16459 4.18807 4.28171 4.30526 4.38841 4.51054 4.53068 4.64321 4.65077 4.73434 4.78457 5.04457 5.04765 5.13967 5.22955 5.32265 5.33719 5.37890 5.43014 5.60001 5.67818 5.74295 5.90102 6.08211 6.19042 6.29261 6.35340 6.53696 6.67248 6.91104 6.95417 6.99641 7.13822 8.28318 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.001642 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.762009 B =17049.292543 C =18031.943987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.086 3.914 10 C -0.243 4.243 11 C -0.067 4.067 12 C -0.229 4.229 13 C 0.194 3.806 14 N -0.705 5.705 15 C 0.510 3.490 16 O -0.576 6.576 17 C 0.043 3.957 18 O -0.317 6.317 19 C 0.115 3.885 20 C -0.170 4.170 21 C -0.063 4.063 22 C -0.146 4.146 23 C 0.122 3.878 24 O -0.593 6.593 25 C -0.065 4.065 26 C -0.216 4.216 27 C -0.081 4.081 28 C -0.191 4.191 29 H 0.289 0.711 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.413 0.587 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.399 0.601 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.105 0.895 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.896 -14.441 7.719 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.083 3.917 10 C -0.263 4.263 11 C -0.085 4.085 12 C -0.231 4.231 13 C 0.072 3.928 14 N -0.358 5.358 15 C 0.296 3.704 16 O -0.456 6.456 17 C -0.034 4.034 18 O -0.230 6.230 19 C 0.070 3.930 20 C -0.188 4.188 21 C -0.081 4.081 22 C -0.147 4.147 23 C 0.045 3.955 24 O -0.402 6.402 25 C -0.083 4.083 26 C -0.235 4.235 27 C -0.100 4.100 28 C -0.211 4.211 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.250 0.750 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.249 0.751 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.123 0.877 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.346 -14.756 6.562 22.978 hybrid contribution 0.030 1.233 0.538 1.346 sum -16.316 -13.523 7.100 22.349 Atomic orbital electron populations 1.69853 1.08907 1.30661 1.34869 1.26726 0.95496 1.04437 0.91193 0.85192 0.79474 0.76331 0.78966 1.18280 1.18975 1.18981 1.19921 0.98419 0.92580 1.41531 0.90614 1.18024 0.91696 0.93103 0.88871 1.21160 1.04533 0.93003 1.07591 1.20687 0.94704 0.96966 0.96164 1.19163 1.01469 0.93078 1.09340 1.19781 0.88304 0.93863 0.90869 1.46163 1.35216 1.25261 1.29113 1.20576 0.82551 0.80904 0.86327 1.90709 1.70605 1.50502 1.33750 1.22621 0.94827 0.87819 0.98169 1.86112 1.46676 1.40937 1.49295 1.19361 0.88474 0.94629 0.90537 1.20644 0.98788 0.96422 1.02979 1.21100 0.94990 0.98991 0.93029 1.19936 1.00889 0.96699 0.97144 1.20978 0.92102 0.93690 0.88766 1.86524 1.40867 1.66933 1.45908 1.21157 0.93234 0.95474 0.98404 1.21529 1.02550 1.03095 0.96297 1.20759 0.98284 0.92299 0.98644 1.21258 1.00362 0.97080 1.02374 0.89981 0.88402 0.86558 0.91885 0.92332 0.75015 0.86169 0.86202 0.85014 0.83343 0.91158 0.91174 0.75085 0.83592 0.83230 0.87655 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.70 10.95 21.83 0.24 -40.47 16 2 C 0.04 1.81 5.14 85.26 0.44 2.24 16 3 Si 0.98 36.67 29.59 68.60 2.03 38.70 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 7 C -0.50 -25.69 9.05 23.46 0.21 -25.48 16 8 H 0.08 3.82 7.91 -2.91 -0.02 3.79 16 9 C 0.09 4.40 5.58 -21.29 -0.12 4.28 16 10 C -0.24 -11.22 9.80 22.73 0.22 -10.99 16 11 C -0.07 -2.66 9.67 22.22 0.21 -2.45 16 12 C -0.23 -8.80 5.27 -19.68 -0.10 -8.91 16 13 C 0.19 6.42 5.79 85.63 0.50 6.92 16 14 N -0.70 -19.80 5.55 -466.79 -2.59 -22.39 16 15 C 0.51 15.03 7.91 87.66 0.69 15.72 16 16 O -0.58 -22.44 16.50 15.98 0.26 -22.17 16 17 C 0.04 0.93 5.22 71.24 0.37 1.30 16 18 O -0.32 -8.63 9.67 -73.36 -0.71 -9.34 16 19 C 0.12 2.67 6.69 22.51 0.15 2.82 16 20 C -0.17 -3.66 9.99 22.37 0.22 -3.43 16 21 C -0.06 -1.10 9.69 22.25 0.22 -0.89 16 22 C -0.15 -2.41 5.51 -19.85 -0.11 -2.52 16 23 C 0.12 1.31 7.17 71.24 0.51 1.82 16 24 O -0.59 -7.71 13.64 -148.98 -2.03 -9.74 16 25 C -0.06 -1.07 9.69 22.25 0.22 -0.85 16 26 C -0.22 -3.99 9.04 22.37 0.20 -3.79 16 27 C -0.08 -3.46 9.67 22.22 0.21 -3.24 16 28 C -0.19 -9.50 8.70 22.73 0.20 -9.30 16 29 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 30 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 32 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 33 H 0.06 1.99 8.08 -2.39 -0.02 1.98 16 34 H 0.41 10.03 8.46 -92.71 -0.78 9.24 16 35 H 0.12 1.90 7.66 -2.39 -0.02 1.89 16 36 H 0.12 1.90 7.66 -2.39 -0.02 1.88 16 37 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 40 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 41 H 0.40 1.16 9.12 -74.06 -0.68 0.48 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 44 H 0.11 4.06 8.06 -2.91 -0.02 4.04 16 45 H 0.10 5.29 6.16 -2.91 -0.02 5.27 16 Total: -1.00 -69.37 389.03 1.03 -68.34 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.42 Total: 33.81 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 4.25 Total: -36.73 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -2.35 Total: -62.86 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -2.48 Total: -41.25 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -69.37 1.03 -68.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362946065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.873 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds