Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35907 * 116.99704 * 2 1 4 4 C 1.38745 * 120.05505 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94328 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.05415 * 359.97438 * 5 4 3 7 7 C 1.38248 * 120.11533 * 0.02562 * 6 5 4 8 8 C 1.38172 * 120.05078 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.02637 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.46941 * 214.97860 * 9 8 7 11 11 O 1.42904 * 109.46834 * 334.97538 * 9 8 7 12 12 C 1.50692 * 109.47459 * 94.97685 * 9 8 7 13 13 O 1.21281 * 120.00228 * 245.00179 * 12 9 8 14 14 N 1.34780 * 120.00114 * 64.99653 * 12 9 8 15 15 C 1.46497 * 120.00371 * 179.97438 * 14 12 9 16 16 C 1.50700 * 109.47348 * 180.02562 * 15 14 12 17 17 C 1.38640 * 119.74884 * 269.72999 * 16 15 14 18 18 C 1.37608 * 120.24734 * 179.72100 * 17 16 15 19 19 C 1.40715 * 119.74616 * 0.57104 * 18 17 16 20 20 C 1.41399 * 120.24536 * 179.68399 * 19 18 17 21 21 H 1.08002 * 119.99993 * 204.40366 * 20 19 18 22 22 C 1.39946 * 119.99977 * 24.40621 * 20 19 18 23 23 N 1.30821 * 120.00234 * 17.84743 * 22 20 19 24 24 Si 1.86805 * 119.99606 * 197.85039 * 22 20 19 25 25 H 1.48498 * 109.46995 * 90.00013 * 24 22 20 26 26 H 1.48505 * 109.46801 * 209.99833 * 24 22 20 27 27 H 1.48498 * 109.47240 * 329.99397 * 24 22 20 28 28 C 1.40722 * 119.51274 * 359.70100 * 19 18 17 29 29 C 1.37618 * 119.74110 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47263 * 300.00291 * 1 2 3 32 32 H 1.08996 * 109.46983 * 60.00083 * 1 2 3 33 33 H 1.08003 * 120.03581 * 359.95841 * 4 3 2 34 34 H 1.07998 * 119.96990 * 179.73180 * 5 4 3 35 35 H 1.07995 * 119.94353 * 179.97438 * 6 5 4 36 36 H 1.07989 * 119.97603 * 179.97438 * 7 6 5 37 37 H 0.96694 * 113.99835 * 60.00719 * 11 9 8 38 38 H 0.97006 * 119.99562 * 0.02562 * 14 12 9 39 39 H 1.09002 * 109.47187 * 300.01011 * 15 14 12 40 40 H 1.09003 * 109.46620 * 60.00207 * 15 14 12 41 41 H 1.08007 * 119.87076 * 359.97438 * 17 16 15 42 42 H 1.08000 * 120.12766 * 180.27756 * 18 17 16 43 43 H 0.97000 * 120.00172 * 180.02562 * 23 22 20 44 44 H 1.07992 * 120.12600 * 179.97438 * 28 19 18 45 45 H 1.07994 * 119.87474 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 0.0016 7 6 4.0560 2.5172 0.0021 8 6 3.4311 1.2849 0.0016 9 6 4.2538 0.0222 0.0028 10 1 3.7473 -0.7419 -0.5868 11 8 5.5373 0.2895 -0.5657 12 6 4.4231 -0.4657 1.4184 13 8 5.5250 -0.4881 1.9245 14 7 3.3499 -0.8773 2.1223 15 6 3.5145 -1.3523 3.4983 16 6 2.1725 -1.7507 4.0562 17 6 1.3985 -0.8131 4.7223 18 6 0.1690 -1.1643 5.2308 19 6 -0.2965 -2.4840 5.0830 20 6 -1.5554 -2.8581 5.6073 21 1 -1.7522 -3.8909 5.8542 22 6 -2.5462 -1.8900 5.8061 23 7 -2.4595 -0.7319 5.2038 24 14 -3.9926 -2.2516 6.9316 25 1 -3.6577 -1.8356 8.3172 26 1 -5.1843 -1.4993 6.4633 27 1 -4.2858 -3.7071 6.9089 28 6 0.5001 -3.4288 4.4101 29 6 1.7240 -3.0538 3.9047 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2128 2.3204 -0.0016 34 1 1.3339 4.5114 -0.0048 35 1 3.7921 4.6381 0.0016 36 1 5.1343 2.5753 0.0030 37 1 6.0455 0.9615 -0.0911 38 1 2.4685 -0.8597 1.7174 39 1 4.1821 -2.2139 3.5079 40 1 3.9403 -0.5560 4.1089 41 1 1.7601 0.1980 4.8389 42 1 -0.4344 -0.4311 5.7454 43 1 -3.1461 -0.0608 5.3419 44 1 0.1528 -4.4444 4.2914 45 1 2.3373 -3.7772 3.3883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362946707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -86.998907 kcal Electronic energy + Delta-G solvation = -29503.270576 eV Core-core repulsion = 25450.292924 eV Total energy + Delta-G solvation = -4052.977651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.78270 -39.30361 -37.91014 -37.50733 -36.28308 -34.68045 -33.48204 -31.88488 -30.44513 -30.20236 -29.39367 -27.80040 -27.27700 -26.13858 -23.64800 -22.24656 -22.10679 -21.10865 -20.24006 -20.12949 -18.52902 -17.83153 -17.42535 -16.79586 -16.65107 -15.79965 -15.59748 -15.45821 -15.00433 -14.83068 -14.53124 -14.28592 -14.16134 -13.89409 -13.68448 -13.36671 -13.24635 -12.84108 -12.55519 -12.31775 -12.14824 -12.06909 -11.89945 -11.71894 -11.61014 -11.39715 -11.21454 -11.19452 -11.07651 -10.82475 -10.70286 -10.48865 -9.81306 -9.62117 -9.51028 -9.27189 -8.95365 -8.62600 -8.29870 -7.60362 -7.47864 -6.91341 -4.50244 1.07597 1.26874 2.54260 2.80726 2.94952 2.97921 3.01587 3.02527 3.13320 3.50817 3.72515 3.82018 4.29721 4.44130 4.51982 4.65933 4.81083 5.00423 5.10170 5.11223 5.18872 5.26969 5.37152 5.51478 5.57015 5.63839 5.74044 5.81166 5.90022 6.11546 6.20075 6.22012 6.28539 6.32152 6.33012 6.56728 6.83493 6.86167 6.93857 7.15175 7.20285 7.23141 7.37142 7.47956 7.68062 7.92181 7.95495 7.99547 8.15820 8.49064 8.51192 8.75262 8.83087 10.02627 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.003238 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.350352 B = 8645.677868 C = 9910.685443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.144 3.856 4 C -0.201 4.201 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.069 4.069 8 C -0.152 4.152 9 C 0.143 3.857 10 H 0.133 0.867 11 O -0.533 6.533 12 C 0.485 3.515 13 O -0.549 6.549 14 N -0.707 5.707 15 C 0.181 3.819 16 C -0.242 4.242 17 C -0.081 4.081 18 C -0.168 4.168 19 C 0.117 3.883 20 C -0.459 4.459 21 H 0.079 0.921 22 C 0.077 3.923 23 N -0.789 5.789 24 Si 0.908 3.092 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.229 4.229 29 C -0.069 4.069 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.380 0.620 38 H 0.407 0.593 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.281 0.719 44 H 0.093 0.907 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 7.965 -10.460 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.098 3.902 4 C -0.220 4.220 5 C -0.094 4.094 6 C -0.174 4.174 7 C -0.087 4.087 8 C -0.154 4.154 9 C 0.080 3.920 10 H 0.151 0.849 11 O -0.338 6.338 12 C 0.270 3.730 13 O -0.428 6.428 14 N -0.361 5.361 15 C 0.059 3.941 16 C -0.244 4.244 17 C -0.100 4.100 18 C -0.188 4.188 19 C 0.114 3.886 20 C -0.488 4.488 21 H 0.097 0.903 22 C -0.141 4.141 23 N -0.414 5.414 24 Si 0.732 3.268 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.185 1.185 28 C -0.248 4.248 29 C -0.088 4.088 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.229 0.771 38 H 0.244 0.756 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.357 7.511 -10.556 13.669 hybrid contribution -1.402 0.539 0.742 1.675 sum 2.955 8.051 -9.814 13.033 Atomic orbital electron populations 1.23182 0.76949 1.04985 1.01660 1.85972 1.22576 1.26464 1.88029 1.18730 0.91170 0.84890 0.95379 1.21281 1.00446 0.92150 1.08135 1.20998 0.94666 0.97105 0.96649 1.20993 0.93923 0.98192 1.04262 1.20704 1.00005 0.90950 0.97085 1.19570 0.91037 0.95819 1.08933 1.20475 0.84300 0.94708 0.92513 0.84924 1.86601 1.28164 1.63850 1.55166 1.21291 0.85146 0.78213 0.88383 1.90669 1.25294 1.55882 1.70949 1.46631 1.10419 1.63760 1.15263 1.19990 0.95652 0.97926 0.80496 1.18993 0.97572 0.95133 1.12679 1.20550 0.94823 0.96490 0.98166 1.21294 0.94968 0.97888 1.04630 1.17657 0.91903 0.91418 0.87595 1.19669 0.96689 0.95548 1.36880 0.90278 1.25924 0.99687 0.94315 0.94205 1.69812 1.33160 1.05670 1.32761 0.86309 0.79727 0.79893 0.80837 1.19170 1.20255 1.18527 1.20975 0.97167 0.99311 1.07372 1.20411 0.95569 0.94384 0.98469 0.87489 0.91617 0.92680 0.84891 0.85610 0.85654 0.85302 0.77092 0.75628 0.92323 0.92432 0.89568 0.86407 0.90787 0.88887 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.14 7.56 -19.45 -0.15 -4.29 16 3 C 0.14 1.88 6.42 -39.22 -0.25 1.62 16 4 C -0.20 -2.32 9.04 -39.43 -0.36 -2.68 16 5 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 6 C -0.16 -1.58 10.04 -39.56 -0.40 -1.98 16 7 C -0.07 -0.78 9.30 -39.60 -0.37 -1.15 16 8 C -0.15 -1.99 5.03 -104.47 -0.53 -2.51 16 9 C 0.14 2.01 3.35 -29.04 -0.10 1.91 16 10 H 0.13 1.79 7.69 -51.93 -0.40 1.39 16 11 O -0.53 -7.21 12.65 -55.09 -0.70 -7.91 16 12 C 0.49 8.25 7.15 -10.99 -0.08 8.17 16 13 O -0.55 -10.85 16.32 -14.30 -0.23 -11.08 16 14 N -0.71 -12.26 5.50 -61.47 -0.34 -12.60 16 15 C 0.18 3.41 5.79 -5.20 -0.03 3.38 16 16 C -0.24 -5.04 5.27 -104.33 -0.55 -5.59 16 17 C -0.08 -1.80 9.67 -39.66 -0.38 -2.19 16 18 C -0.17 -4.12 8.70 -38.88 -0.34 -4.46 16 19 C 0.12 2.94 5.58 -106.82 -0.60 2.34 16 20 C -0.46 -11.51 9.05 -37.74 -0.34 -11.85 16 21 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 22 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 23 N -0.79 -19.00 10.95 55.55 0.61 -18.39 16 24 Si 0.91 17.67 29.60 -169.99 -5.03 12.64 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 28 C -0.23 -5.30 9.80 -38.87 -0.38 -5.68 16 29 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 30 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 32 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 33 H 0.13 1.32 6.30 -52.48 -0.33 0.99 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 1.18 6.41 -52.49 -0.34 0.85 16 37 H 0.38 4.18 7.07 45.56 0.32 4.51 16 38 H 0.41 6.88 5.97 -40.82 -0.24 6.64 16 39 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 43 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 44 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 45 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -28.94 378.45 -9.74 -38.67 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -4.57 Total: -20.68 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.27 Total: -30.99 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.08 Total: -23.27 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.94 -9.74 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362946707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.324 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds