Wall clock time and date at job start Sat Apr 11 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35907 * 116.99704 * 2 1 4 4 C 1.38745 * 120.05505 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94328 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.05415 * 359.97438 * 5 4 3 7 7 C 1.38248 * 120.11533 * 0.02562 * 6 5 4 8 8 C 1.38172 * 120.05078 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.02637 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.46941 * 214.97860 * 9 8 7 11 11 O 1.42904 * 109.46834 * 334.97538 * 9 8 7 12 12 C 1.50692 * 109.47459 * 94.97685 * 9 8 7 13 13 O 1.21281 * 120.00228 * 245.00179 * 12 9 8 14 14 N 1.34780 * 120.00114 * 64.99653 * 12 9 8 15 15 C 1.46497 * 120.00371 * 179.97438 * 14 12 9 16 16 C 1.50700 * 109.47348 * 180.02562 * 15 14 12 17 17 C 1.38640 * 119.74884 * 269.72999 * 16 15 14 18 18 C 1.37608 * 120.24734 * 179.72100 * 17 16 15 19 19 C 1.40715 * 119.74616 * 0.57104 * 18 17 16 20 20 C 1.41399 * 120.24536 * 179.68399 * 19 18 17 21 21 H 1.08002 * 119.99993 * 204.40366 * 20 19 18 22 22 C 1.39946 * 119.99977 * 24.40621 * 20 19 18 23 23 N 1.30821 * 120.00234 * 17.84743 * 22 20 19 24 24 Si 1.86805 * 119.99606 * 197.85039 * 22 20 19 25 25 H 1.48498 * 109.46995 * 90.00013 * 24 22 20 26 26 H 1.48505 * 109.46801 * 209.99833 * 24 22 20 27 27 H 1.48498 * 109.47240 * 329.99397 * 24 22 20 28 28 C 1.40722 * 119.51274 * 359.70100 * 19 18 17 29 29 C 1.37618 * 119.74110 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47263 * 300.00291 * 1 2 3 32 32 H 1.08996 * 109.46983 * 60.00083 * 1 2 3 33 33 H 1.08003 * 120.03581 * 359.95841 * 4 3 2 34 34 H 1.07998 * 119.96990 * 179.73180 * 5 4 3 35 35 H 1.07995 * 119.94353 * 179.97438 * 6 5 4 36 36 H 1.07989 * 119.97603 * 179.97438 * 7 6 5 37 37 H 0.96694 * 113.99835 * 60.00719 * 11 9 8 38 38 H 0.97006 * 119.99562 * 0.02562 * 14 12 9 39 39 H 1.09002 * 109.47187 * 300.01011 * 15 14 12 40 40 H 1.09003 * 109.46620 * 60.00207 * 15 14 12 41 41 H 1.08007 * 119.87076 * 359.97438 * 17 16 15 42 42 H 1.08000 * 120.12766 * 180.27756 * 18 17 16 43 43 H 0.97000 * 120.00172 * 180.02562 * 23 22 20 44 44 H 1.07992 * 120.12600 * 179.97438 * 28 19 18 45 45 H 1.07994 * 119.87474 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 0.0016 7 6 4.0560 2.5172 0.0021 8 6 3.4311 1.2849 0.0016 9 6 4.2538 0.0222 0.0028 10 1 3.7473 -0.7419 -0.5868 11 8 5.5373 0.2895 -0.5657 12 6 4.4231 -0.4657 1.4184 13 8 5.5250 -0.4881 1.9245 14 7 3.3499 -0.8773 2.1223 15 6 3.5145 -1.3523 3.4983 16 6 2.1725 -1.7507 4.0562 17 6 1.3985 -0.8131 4.7223 18 6 0.1690 -1.1643 5.2308 19 6 -0.2965 -2.4840 5.0830 20 6 -1.5554 -2.8581 5.6073 21 1 -1.7522 -3.8909 5.8542 22 6 -2.5462 -1.8900 5.8061 23 7 -2.4595 -0.7319 5.2038 24 14 -3.9926 -2.2516 6.9316 25 1 -3.6577 -1.8356 8.3172 26 1 -5.1843 -1.4993 6.4633 27 1 -4.2858 -3.7071 6.9089 28 6 0.5001 -3.4288 4.4101 29 6 1.7240 -3.0538 3.9047 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2128 2.3204 -0.0016 34 1 1.3339 4.5114 -0.0048 35 1 3.7921 4.6381 0.0016 36 1 5.1343 2.5753 0.0030 37 1 6.0455 0.9615 -0.0911 38 1 2.4685 -0.8597 1.7174 39 1 4.1821 -2.2139 3.5079 40 1 3.9403 -0.5560 4.1089 41 1 1.7601 0.1980 4.8389 42 1 -0.4344 -0.4311 5.7454 43 1 -3.1461 -0.0608 5.3419 44 1 0.1528 -4.4444 4.2914 45 1 2.3373 -3.7772 3.3883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362946707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:51 Heat of formation + Delta-G solvation = -103.185344 kcal Electronic energy + Delta-G solvation = -29503.972472 eV Core-core repulsion = 25450.292924 eV Total energy + Delta-G solvation = -4053.679548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80986 -40.52968 -39.52779 -38.57595 -37.36977 -36.28526 -35.12488 -32.95417 -31.94238 -31.20830 -31.13483 -29.16491 -28.23229 -27.50783 -25.26364 -23.13490 -23.09066 -22.91360 -21.86340 -21.50917 -19.47022 -19.24771 -19.07345 -17.82627 -17.68676 -17.21651 -16.84125 -16.68398 -16.25909 -16.13727 -15.70500 -15.56927 -15.42281 -15.31485 -15.03222 -14.80244 -14.32433 -14.20860 -13.85564 -13.81249 -13.57227 -13.42969 -13.25085 -12.96490 -12.84124 -12.73776 -12.57713 -12.50584 -12.28082 -12.11472 -12.04904 -11.80265 -11.52288 -11.30753 -11.08227 -10.84150 -10.09181 -9.88925 -9.41612 -9.30578 -9.18469 -8.67709 -6.37234 0.20233 0.41509 0.82750 1.12172 1.39026 1.47607 1.47972 1.50939 2.14658 2.19750 2.34072 2.68775 2.77858 3.29089 3.47531 3.70605 3.81318 3.82857 4.01427 4.13328 4.17926 4.25924 4.27916 4.38719 4.41355 4.48859 4.51270 4.62295 4.67171 4.73349 4.78095 4.90807 5.02708 5.13808 5.26228 5.33090 5.38044 5.40280 5.44223 5.51117 5.66858 5.76642 5.89034 6.07518 6.18551 6.31291 6.34343 6.37786 6.60447 6.66458 6.91099 6.99250 7.12587 8.28596 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.003238 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.350352 B = 8645.677868 C = 9910.685443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.332 6.332 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.077 4.077 8 C -0.171 4.171 9 C 0.155 3.845 10 H 0.136 0.864 11 O -0.537 6.537 12 C 0.486 3.514 13 O -0.578 6.578 14 N -0.705 5.705 15 C 0.188 3.812 16 C -0.229 4.229 17 C -0.082 4.082 18 C -0.188 4.188 19 C 0.090 3.910 20 C -0.495 4.495 21 H 0.076 0.924 22 C 0.041 3.959 23 N -0.815 5.815 24 Si 0.978 3.022 25 H -0.265 1.265 26 H -0.266 1.266 27 H -0.259 1.259 28 C -0.241 4.241 29 C -0.068 4.068 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.390 0.610 38 H 0.409 0.591 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.289 0.711 44 H 0.099 0.901 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 9.122 -11.172 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.245 6.245 3 C 0.081 3.919 4 C -0.232 4.232 5 C -0.094 4.094 6 C -0.173 4.173 7 C -0.095 4.095 8 C -0.173 4.173 9 C 0.092 3.908 10 H 0.153 0.847 11 O -0.344 6.344 12 C 0.272 3.728 13 O -0.459 6.459 14 N -0.359 5.359 15 C 0.065 3.935 16 C -0.231 4.231 17 C -0.101 4.101 18 C -0.207 4.207 19 C 0.088 3.912 20 C -0.524 4.524 21 H 0.094 0.906 22 C -0.176 4.176 23 N -0.440 5.440 24 Si 0.799 3.201 25 H -0.189 1.189 26 H -0.191 1.191 27 H -0.183 1.183 28 C -0.260 4.260 29 C -0.086 4.086 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.241 0.759 38 H 0.247 0.753 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.406 8.677 -11.287 14.903 hybrid contribution -1.306 0.251 0.891 1.601 sum 3.100 8.929 -10.396 14.050 Atomic orbital electron populations 1.23262 0.76292 1.05292 1.02152 1.85933 1.23370 1.26982 1.88259 1.18942 0.91436 0.85291 0.96209 1.21533 1.01137 0.92289 1.08224 1.21396 0.95183 0.97609 0.95239 1.21369 0.94006 0.99008 1.02953 1.21034 1.01187 0.90740 0.96530 1.19586 0.91049 0.95864 1.10777 1.20310 0.84777 0.95514 0.90185 0.84685 1.86580 1.28186 1.64404 1.55225 1.21840 0.84308 0.77231 0.89405 1.90649 1.26260 1.57028 1.71952 1.46513 1.10876 1.63799 1.14680 1.19836 0.94222 0.98102 0.81309 1.19167 0.97928 0.94706 1.11281 1.20692 0.94210 0.97398 0.97762 1.21220 0.95891 0.97661 1.05941 1.17958 0.92652 0.92141 0.88473 1.19891 0.97635 0.96007 1.38895 0.90604 1.26680 1.01983 0.93885 0.95006 1.69848 1.34321 1.06443 1.33434 0.85263 0.76544 0.79742 0.78577 1.18940 1.19090 1.18313 1.21145 0.97880 0.99441 1.07582 1.20655 0.95109 0.95041 0.97827 0.87336 0.92936 0.90335 0.83864 0.82996 0.82887 0.83558 0.75881 0.75290 0.91923 0.92569 0.88342 0.88016 0.89999 0.88291 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.64 16 2 O -0.33 -8.53 7.56 -92.51 -0.70 -9.23 16 3 C 0.13 3.19 6.42 22.50 0.14 3.33 16 4 C -0.21 -4.60 9.04 22.37 0.20 -4.40 16 5 C -0.08 -1.38 10.04 22.25 0.22 -1.15 16 6 C -0.16 -2.72 10.04 22.28 0.22 -2.50 16 7 C -0.08 -1.59 9.30 22.26 0.21 -1.38 16 8 C -0.17 -4.27 5.03 -19.77 -0.10 -4.37 16 9 C 0.15 4.21 3.35 29.10 0.10 4.30 16 10 H 0.14 3.56 7.69 -2.39 -0.02 3.54 16 11 O -0.54 -13.84 12.65 -129.99 -1.64 -15.48 16 12 C 0.49 16.11 7.15 87.65 0.63 16.74 16 13 O -0.58 -22.35 16.32 15.96 0.26 -22.09 16 14 N -0.71 -23.88 5.50 -466.79 -2.57 -26.45 16 15 C 0.19 6.87 5.79 85.63 0.50 7.37 16 16 C -0.23 -9.40 5.27 -19.67 -0.10 -9.51 16 17 C -0.08 -3.64 9.67 22.22 0.21 -3.42 16 18 C -0.19 -9.41 8.70 22.73 0.20 -9.21 16 19 C 0.09 4.64 5.58 -21.29 -0.12 4.53 16 20 C -0.50 -25.50 9.05 23.46 0.21 -25.28 16 21 H 0.08 3.79 7.91 -2.91 -0.02 3.77 16 22 C 0.04 1.94 5.14 85.26 0.44 2.38 16 23 N -0.82 -39.91 10.95 21.83 0.24 -39.67 16 24 Si 0.98 36.26 29.60 68.60 2.03 38.29 16 25 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 26 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 27 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 28 C -0.24 -11.27 9.80 22.73 0.22 -11.04 16 29 C -0.07 -2.83 9.67 22.22 0.21 -2.62 16 30 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.25 7.66 -2.39 -0.02 1.23 16 32 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 33 H 0.14 2.66 6.30 -2.91 -0.02 2.64 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.15 2.35 6.41 -2.92 -0.02 2.33 16 37 H 0.39 8.02 7.07 -74.06 -0.52 7.49 16 38 H 0.41 13.64 5.97 -92.70 -0.55 13.09 16 39 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 40 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 41 H 0.10 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.10 5.36 6.16 -2.91 -0.02 5.34 16 43 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 44 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 45 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -62.27 378.45 2.10 -60.18 By element: Atomic # 1 Polarization: 49.09 SS G_CDS: -0.03 Total: 49.05 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 4.51 Total: -34.60 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -2.33 Total: -66.12 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -2.08 Total: -46.80 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -62.27 2.10 -60.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362946707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.009 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds