Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47041 * 2 1 4 4 O 1.42902 * 109.46825 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46730 * 119.99851 * 2 1 3 6 6 C 1.34782 * 119.99849 * 300.00055 * 5 2 1 7 7 O 1.21551 * 120.00160 * 359.97438 * 6 5 2 8 8 C 1.47883 * 119.99844 * 180.02562 * 6 5 2 9 9 C 1.39919 * 120.02313 * 359.71855 * 8 6 5 10 10 C 1.38337 * 120.35475 * 179.71757 * 9 8 6 11 11 C 1.37746 * 120.41134 * 0.56851 * 10 9 8 12 12 C 1.40751 * 120.04277 * 359.71400 * 11 10 9 13 13 C 1.41431 * 120.18220 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00101 * 24.44003 * 13 12 11 15 15 C 1.39942 * 120.00506 * 204.43735 * 13 12 11 16 16 N 1.30829 * 119.99495 * 17.88184 * 15 13 12 17 17 Si 1.86794 * 120.00452 * 197.88009 * 15 13 12 18 18 H 1.48503 * 109.46936 * 89.99795 * 17 15 13 19 19 H 1.48498 * 109.47390 * 209.99933 * 17 15 13 20 20 H 1.48504 * 109.47124 * 330.00144 * 17 15 13 21 21 C 1.38991 * 120.02386 * 180.02562 * 8 6 5 22 22 C 1.50690 * 109.47320 * 239.99720 * 2 1 3 23 23 C 1.38267 * 119.94484 * 89.73241 * 22 2 1 24 24 C 1.38147 * 120.05383 * 179.73066 * 23 22 2 25 25 C 1.38736 * 119.94496 * 0.53532 * 24 23 22 26 26 O 1.35896 * 120.05457 * 179.75313 * 25 24 23 27 27 C 1.38727 * 119.88562 * 359.73704 * 25 24 23 28 28 C 1.38135 * 119.94850 * 359.97438 * 27 25 24 29 29 H 1.08995 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46968 * 60.00336 * 1 2 3 31 31 H 1.09000 * 109.47422 * 300.00491 * 1 2 3 32 32 H 1.08994 * 109.47239 * 299.99638 * 3 2 1 33 33 H 1.09005 * 109.47437 * 59.99989 * 3 2 1 34 34 H 0.96706 * 113.99763 * 179.97438 * 4 3 2 35 35 H 0.96997 * 119.99748 * 120.00131 * 5 2 1 36 36 H 1.07994 * 119.82616 * 359.97438 * 9 8 6 37 37 H 1.08002 * 119.79253 * 180.26144 * 10 9 8 38 38 H 1.08006 * 119.98036 * 179.74260 * 11 10 9 39 39 H 0.96996 * 119.99908 * 179.97438 * 16 15 13 40 40 H 1.08005 * 120.20556 * 359.97438 * 21 8 6 41 41 H 1.07996 * 119.97369 * 359.97438 * 23 22 2 42 42 H 1.08004 * 120.02680 * 180.27021 * 24 23 22 43 43 H 0.96701 * 114.00066 * 269.98235 * 26 25 24 44 44 H 1.08006 * 120.02226 * 179.97438 * 27 25 24 45 45 H 1.08002 * 119.97886 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 7 2.0183 -0.6906 1.1963 6 6 1.6926 -0.2301 2.4204 7 8 0.9942 0.7585 2.5318 8 6 2.1859 -0.9269 3.6279 9 6 2.9859 -2.0677 3.5002 10 6 3.4560 -2.7214 4.6250 11 6 3.1325 -2.2641 5.8835 12 6 2.3240 -1.1216 6.0318 13 6 1.9906 -0.6491 7.3225 14 1 2.6282 -0.8794 8.1633 15 6 0.8345 0.1168 7.5103 16 7 -0.1093 0.1094 6.6043 17 14 0.6388 1.1495 9.0545 18 1 1.1985 2.5045 8.8179 19 1 -0.8021 1.2617 9.3957 20 1 1.3646 0.5033 10.1774 21 6 1.8500 -0.4527 4.8905 22 6 2.0324 -0.7104 -1.2303 23 6 2.2572 0.0008 -2.3945 24 6 2.7230 -0.6472 -3.5222 25 6 2.9547 -2.0147 -3.4890 26 8 3.4081 -2.6553 -4.5984 27 6 2.7230 -2.7269 -2.3213 28 6 2.2629 -2.0733 -1.1947 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.8624 2.3259 0.0002 35 1 2.5760 -1.4793 1.1073 36 1 3.2413 -2.4374 2.5182 37 1 4.0763 -3.5987 4.5159 38 1 3.4999 -2.7824 6.7570 39 1 -0.9108 0.6400 6.7346 40 1 1.2289 0.4249 4.9938 41 1 2.0722 1.0645 -2.4212 42 1 2.9026 -0.0905 -4.4301 43 1 2.7066 -2.9882 -5.1748 44 1 2.9022 -3.7916 -2.2932 45 1 2.0827 -2.6273 -0.2852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363583279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = -77.625061 kcal Electronic energy + Delta-G solvation = -29372.990068 eV Core-core repulsion = 25320.418897 eV Total energy + Delta-G solvation = -4052.571171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.59216 -39.29171 -37.80655 -36.84143 -36.21760 -34.53418 -33.74771 -31.83734 -31.05705 -29.72102 -29.40887 -28.73105 -26.10312 -25.31968 -23.83325 -22.76380 -22.31103 -20.99213 -20.13986 -19.24170 -18.58416 -17.96161 -17.21934 -16.91908 -15.98062 -15.75006 -15.30036 -15.20168 -14.87811 -14.75649 -14.56293 -14.13085 -13.79767 -13.76081 -13.44445 -13.18931 -13.14843 -12.74039 -12.48850 -12.41739 -12.21980 -12.06353 -11.98265 -11.73873 -11.63395 -11.17163 -11.07582 -10.89874 -10.73121 -10.58699 -10.49528 -10.05363 -9.83386 -9.68645 -9.21789 -9.14549 -8.88158 -8.79863 -8.48726 -7.62215 -7.51247 -6.80394 -4.41187 1.04094 1.19630 2.21569 2.81679 3.07236 3.10330 3.15704 3.39472 3.64507 3.86576 3.91734 3.99846 4.24392 4.48351 4.63707 4.71592 4.79192 5.12047 5.16448 5.33614 5.38520 5.44705 5.61578 5.63266 5.65830 5.80992 5.82700 5.89753 5.91943 6.08271 6.16442 6.24332 6.28962 6.38225 6.39394 6.61254 6.72482 6.91269 6.99402 7.03289 7.21759 7.39024 7.42539 7.70628 7.71651 7.77657 7.93174 8.10744 8.19698 8.51049 8.80512 8.83860 8.95797 10.14296 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.002748 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.089763 B =10188.027324 C =10985.900996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.224 3.776 3 C 0.061 3.939 4 O -0.561 6.561 5 N -0.720 5.720 6 C 0.572 3.428 7 O -0.547 6.547 8 C -0.127 4.127 9 C -0.216 4.216 10 C -0.098 4.098 11 C -0.211 4.211 12 C 0.098 3.902 13 C -0.460 4.460 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.784 5.784 17 Si 0.910 3.090 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.091 4.091 22 C -0.075 4.075 23 C -0.085 4.085 24 C -0.143 4.143 25 C 0.097 3.903 26 O -0.501 6.501 27 C -0.139 4.139 28 C -0.099 4.099 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.374 0.626 35 H 0.399 0.601 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.388 0.612 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -0.449 -18.100 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.137 3.863 3 C -0.017 4.017 4 O -0.366 6.366 5 N -0.375 5.375 6 C 0.363 3.637 7 O -0.426 6.426 8 C -0.131 4.131 9 C -0.236 4.236 10 C -0.116 4.116 11 C -0.231 4.231 12 C 0.096 3.904 13 C -0.489 4.489 14 H 0.099 0.901 15 C -0.146 4.146 16 N -0.408 5.408 17 Si 0.734 3.266 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.112 4.112 22 C -0.075 4.075 23 C -0.104 4.104 24 C -0.161 4.161 25 C 0.053 3.947 26 O -0.310 6.310 27 C -0.158 4.158 28 C -0.118 4.118 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.220 0.780 35 H 0.237 0.763 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.243 0.757 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.917 -0.174 -17.831 17.856 hybrid contribution -0.198 0.426 0.300 0.557 sum 0.719 0.252 -17.531 17.548 Atomic orbital electron populations 1.22197 0.92500 1.03258 1.03858 1.19035 0.93955 0.90428 0.82861 1.22692 0.81638 0.96184 1.01200 1.86524 1.19187 1.33116 1.97739 1.46034 1.54660 1.32374 1.04400 1.18755 0.78596 0.83301 0.83002 1.90607 1.38511 1.26574 1.86863 1.19462 1.02992 0.98108 0.92490 1.20341 1.06850 0.99954 0.96476 1.20433 0.99584 0.98532 0.93055 1.21101 1.07661 0.98962 0.95410 1.17604 0.90011 0.89578 0.93256 1.19591 1.06565 1.28195 0.94559 0.90102 1.25957 0.94914 0.95426 0.98257 1.69794 1.05331 1.31680 1.33990 0.86278 0.78132 0.80629 0.81521 1.19171 1.20245 1.18589 1.21625 0.99979 1.00137 0.89410 1.19802 0.99315 0.93779 0.94650 1.20830 0.98031 0.99797 0.91700 1.21349 1.01185 0.94183 0.99398 1.18468 0.98247 0.90699 0.87275 1.84834 1.36098 1.75810 1.34308 1.21368 1.00785 1.00548 0.93072 1.20889 0.98654 0.93893 0.98314 0.91749 0.91949 0.89134 0.93506 0.90491 0.77971 0.76313 0.89412 0.88927 0.88645 0.90504 0.84805 0.85505 0.85490 0.75693 0.85298 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.38 37.16 0.31 -1.90 16 2 C 0.22 3.22 0.68 -132.97 -0.09 3.13 16 3 C 0.06 0.85 5.13 37.16 0.19 1.05 16 4 O -0.56 -7.86 12.91 -35.23 -0.46 -8.32 16 5 N -0.72 -12.22 4.67 -49.60 -0.23 -12.45 16 6 C 0.57 12.20 7.19 -12.31 -0.09 12.11 16 7 O -0.55 -12.70 12.54 5.32 0.07 -12.64 16 8 C -0.13 -3.00 5.87 -105.04 -0.62 -3.61 16 9 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 10 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 11 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 12 C 0.10 2.59 5.57 -106.87 -0.60 1.99 16 13 C -0.46 -12.06 9.05 -37.73 -0.34 -12.40 16 14 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 15 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 16 N -0.78 -20.53 10.95 55.55 0.61 -19.92 16 17 Si 0.91 18.71 29.59 -169.99 -5.03 13.67 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 C -0.09 -2.42 8.24 -38.44 -0.32 -2.73 16 22 C -0.07 -0.95 4.51 -104.60 -0.47 -1.42 16 23 C -0.09 -0.94 8.92 -39.60 -0.35 -1.30 16 24 C -0.14 -1.47 9.99 -39.43 -0.39 -1.86 16 25 C 0.10 1.04 6.70 -39.22 -0.26 0.77 16 26 O -0.50 -4.62 13.50 -19.41 -0.26 -4.89 16 27 C -0.14 -1.52 9.99 -39.44 -0.39 -1.91 16 28 C -0.10 -1.19 8.96 -39.61 -0.35 -1.55 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.50 6.17 -51.93 -0.32 1.18 16 32 H 0.05 0.51 6.50 -51.93 -0.34 0.17 16 33 H 0.08 1.27 6.16 -51.93 -0.32 0.95 16 34 H 0.37 3.65 9.12 45.56 0.42 4.06 16 35 H 0.40 6.33 4.68 -40.82 -0.19 6.14 16 36 H 0.09 1.59 6.38 -52.49 -0.33 1.25 16 37 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 39 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 40 H 0.13 3.81 5.74 -52.48 -0.30 3.50 16 41 H 0.13 1.22 6.17 -52.49 -0.32 0.89 16 42 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.39 1.62 9.06 45.56 0.41 2.03 16 44 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 45 H 0.13 1.49 6.70 -52.49 -0.35 1.14 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -31.84 370.55 -8.47 -40.31 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -3.74 Total: 19.44 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -5.01 Total: -20.80 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.38 Total: -32.37 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.65 Total: -25.84 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.84 -8.47 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363583279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.310 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds