Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47041 * 2 1 4 4 O 1.42902 * 109.46825 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46730 * 119.99851 * 2 1 3 6 6 C 1.34782 * 119.99849 * 300.00055 * 5 2 1 7 7 O 1.21551 * 120.00160 * 359.97438 * 6 5 2 8 8 C 1.47883 * 119.99844 * 180.02562 * 6 5 2 9 9 C 1.39919 * 120.02313 * 359.71855 * 8 6 5 10 10 C 1.38337 * 120.35475 * 179.71757 * 9 8 6 11 11 C 1.37746 * 120.41134 * 0.56851 * 10 9 8 12 12 C 1.40751 * 120.04277 * 359.71400 * 11 10 9 13 13 C 1.41431 * 120.18220 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00101 * 24.44003 * 13 12 11 15 15 C 1.39942 * 120.00506 * 204.43735 * 13 12 11 16 16 N 1.30829 * 119.99495 * 17.88184 * 15 13 12 17 17 Si 1.86794 * 120.00452 * 197.88009 * 15 13 12 18 18 H 1.48503 * 109.46936 * 89.99795 * 17 15 13 19 19 H 1.48498 * 109.47390 * 209.99933 * 17 15 13 20 20 H 1.48504 * 109.47124 * 330.00144 * 17 15 13 21 21 C 1.38991 * 120.02386 * 180.02562 * 8 6 5 22 22 C 1.50690 * 109.47320 * 239.99720 * 2 1 3 23 23 C 1.38267 * 119.94484 * 89.73241 * 22 2 1 24 24 C 1.38147 * 120.05383 * 179.73066 * 23 22 2 25 25 C 1.38736 * 119.94496 * 0.53532 * 24 23 22 26 26 O 1.35896 * 120.05457 * 179.75313 * 25 24 23 27 27 C 1.38727 * 119.88562 * 359.73704 * 25 24 23 28 28 C 1.38135 * 119.94850 * 359.97438 * 27 25 24 29 29 H 1.08995 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46968 * 60.00336 * 1 2 3 31 31 H 1.09000 * 109.47422 * 300.00491 * 1 2 3 32 32 H 1.08994 * 109.47239 * 299.99638 * 3 2 1 33 33 H 1.09005 * 109.47437 * 59.99989 * 3 2 1 34 34 H 0.96706 * 113.99763 * 179.97438 * 4 3 2 35 35 H 0.96997 * 119.99748 * 120.00131 * 5 2 1 36 36 H 1.07994 * 119.82616 * 359.97438 * 9 8 6 37 37 H 1.08002 * 119.79253 * 180.26144 * 10 9 8 38 38 H 1.08006 * 119.98036 * 179.74260 * 11 10 9 39 39 H 0.96996 * 119.99908 * 179.97438 * 16 15 13 40 40 H 1.08005 * 120.20556 * 359.97438 * 21 8 6 41 41 H 1.07996 * 119.97369 * 359.97438 * 23 22 2 42 42 H 1.08004 * 120.02680 * 180.27021 * 24 23 22 43 43 H 0.96701 * 114.00066 * 269.98235 * 26 25 24 44 44 H 1.08006 * 120.02226 * 179.97438 * 27 25 24 45 45 H 1.08002 * 119.97886 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 7 2.0183 -0.6906 1.1963 6 6 1.6926 -0.2301 2.4204 7 8 0.9942 0.7585 2.5318 8 6 2.1859 -0.9269 3.6279 9 6 2.9859 -2.0677 3.5002 10 6 3.4560 -2.7214 4.6250 11 6 3.1325 -2.2641 5.8835 12 6 2.3240 -1.1216 6.0318 13 6 1.9906 -0.6491 7.3225 14 1 2.6282 -0.8794 8.1633 15 6 0.8345 0.1168 7.5103 16 7 -0.1093 0.1094 6.6043 17 14 0.6388 1.1495 9.0545 18 1 1.1985 2.5045 8.8179 19 1 -0.8021 1.2617 9.3957 20 1 1.3646 0.5033 10.1774 21 6 1.8500 -0.4527 4.8905 22 6 2.0324 -0.7104 -1.2303 23 6 2.2572 0.0008 -2.3945 24 6 2.7230 -0.6472 -3.5222 25 6 2.9547 -2.0147 -3.4890 26 8 3.4081 -2.6553 -4.5984 27 6 2.7230 -2.7269 -2.3213 28 6 2.2629 -2.0733 -1.1947 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.8624 2.3259 0.0002 35 1 2.5760 -1.4793 1.1073 36 1 3.2413 -2.4374 2.5182 37 1 4.0763 -3.5987 4.5159 38 1 3.4999 -2.7824 6.7570 39 1 -0.9108 0.6400 6.7346 40 1 1.2289 0.4249 4.9938 41 1 2.0722 1.0645 -2.4212 42 1 2.9026 -0.0905 -4.4301 43 1 2.7066 -2.9882 -5.1748 44 1 2.9022 -3.7916 -2.2932 45 1 2.0827 -2.6273 -0.2852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363583279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -100.759410 kcal Electronic energy + Delta-G solvation = -29373.993249 eV Core-core repulsion = 25320.418897 eV Total energy + Delta-G solvation = -4053.574351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75292 -40.46992 -39.19816 -38.28533 -37.19840 -35.81139 -35.55910 -33.20830 -32.03652 -31.39263 -31.13225 -29.70615 -27.25293 -27.14837 -25.14212 -23.76824 -23.46576 -22.81689 -21.46538 -20.64151 -19.72194 -19.27061 -18.41591 -18.28665 -17.25138 -17.09485 -16.65012 -16.38459 -16.25552 -15.99871 -15.85962 -15.57563 -15.12638 -15.04587 -14.78697 -14.53052 -14.37152 -14.17418 -14.11235 -13.53754 -13.42784 -13.21411 -13.10277 -12.95197 -12.88508 -12.80091 -12.74406 -12.52771 -12.17777 -11.99925 -11.76881 -11.50605 -11.37534 -11.08833 -11.05283 -10.44734 -10.15335 -9.95010 -9.49865 -9.42405 -9.38181 -8.66641 -6.37976 0.21209 0.38680 0.40179 1.00698 1.36356 1.47884 1.50520 2.12539 2.18831 2.19478 2.67484 2.79605 3.19580 3.30066 3.49179 3.70183 3.87357 3.98731 4.03615 4.10228 4.29023 4.39056 4.43065 4.48138 4.56737 4.58176 4.66888 4.69115 4.81741 4.88234 4.91418 5.04361 5.08876 5.17601 5.21509 5.30226 5.34264 5.41158 5.45593 5.52396 5.67629 5.84575 5.86638 5.93584 6.05264 6.28487 6.51446 6.68907 6.83431 6.88048 6.88611 6.94421 7.34391 8.30113 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.002748 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.089763 B =10188.027324 C =10985.900996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.219 3.781 3 C 0.065 3.935 4 O -0.576 6.576 5 N -0.703 5.703 6 C 0.569 3.431 7 O -0.574 6.574 8 C -0.138 4.138 9 C -0.202 4.202 10 C -0.096 4.096 11 C -0.219 4.219 12 C 0.067 3.933 13 C -0.497 4.497 14 H 0.083 0.917 15 C 0.030 3.970 16 N -0.822 5.822 17 Si 0.983 3.017 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.252 1.252 21 C -0.128 4.128 22 C -0.089 4.089 23 C -0.085 4.085 24 C -0.144 4.144 25 C 0.100 3.900 26 O -0.509 6.509 27 C -0.145 4.145 28 C -0.109 4.109 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.391 0.609 35 H 0.406 0.594 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.108 0.892 39 H 0.287 0.713 40 H 0.102 0.898 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.411 0.589 44 H 0.143 0.857 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -1.382 -20.509 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.133 3.867 3 C -0.014 4.014 4 O -0.383 6.383 5 N -0.356 5.356 6 C 0.359 3.641 7 O -0.455 6.455 8 C -0.141 4.141 9 C -0.221 4.221 10 C -0.113 4.113 11 C -0.239 4.239 12 C 0.065 3.935 13 C -0.526 4.526 14 H 0.101 0.899 15 C -0.185 4.185 16 N -0.448 5.448 17 Si 0.803 3.197 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.175 1.175 21 C -0.148 4.148 22 C -0.090 4.090 23 C -0.103 4.103 24 C -0.162 4.162 25 C 0.056 3.944 26 O -0.323 6.323 27 C -0.164 4.164 28 C -0.128 4.128 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.240 0.760 35 H 0.244 0.756 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.270 0.730 44 H 0.160 0.840 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.145 -1.134 -20.290 20.435 hybrid contribution -0.473 0.593 0.793 1.097 sum 1.672 -0.540 -19.498 19.577 Atomic orbital electron populations 1.22142 0.92431 1.03230 1.03604 1.19234 0.94142 0.90827 0.82455 1.22611 0.81748 0.95804 1.01226 1.86469 1.19144 1.34943 1.97739 1.45903 1.53583 1.32142 1.03965 1.18541 0.78683 0.83056 0.83854 1.90602 1.39739 1.27724 1.87404 1.19824 1.02854 0.98881 0.92576 1.20794 1.04608 0.98280 0.98468 1.20890 0.99118 0.99409 0.91926 1.21390 1.07010 0.98287 0.97210 1.17959 0.91188 0.90821 0.93538 1.19856 1.07593 1.30317 0.94836 0.89909 1.26841 0.94113 0.96027 1.01509 1.69887 1.05961 1.32790 1.36145 0.85195 0.78447 0.78510 0.77541 1.19090 1.19312 1.17510 1.21431 1.01908 1.00374 0.91090 1.19646 1.01057 0.94069 0.94200 1.20984 0.97579 1.00477 0.91277 1.21583 1.00526 0.94258 0.99875 1.18593 0.97199 0.91014 0.87618 1.84775 1.37494 1.75778 1.34218 1.21526 1.00655 1.01338 0.92847 1.20945 0.99209 0.93804 0.98827 0.91661 0.88990 0.92487 0.90005 0.93874 0.75986 0.75593 0.85529 0.84648 0.87420 0.90261 0.87985 0.84110 0.83426 0.73026 0.83950 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 8.38 71.98 0.60 -3.66 16 2 C 0.22 6.08 0.68 2.85 0.00 6.08 16 3 C 0.06 1.74 5.13 71.98 0.37 2.11 16 4 O -0.58 -15.36 12.91 -148.98 -1.92 -17.28 16 5 N -0.70 -23.51 4.67 -429.12 -2.00 -25.52 16 6 C 0.57 24.90 7.19 86.80 0.62 25.53 16 7 O -0.57 -28.17 12.54 -3.88 -0.05 -28.22 16 8 C -0.14 -6.65 5.87 -20.14 -0.12 -6.77 16 9 C -0.20 -8.29 9.55 22.70 0.22 -8.08 16 10 C -0.10 -3.92 10.01 22.18 0.22 -3.70 16 11 C -0.22 -10.46 9.78 22.77 0.22 -10.24 16 12 C 0.07 3.69 5.57 -21.32 -0.12 3.58 16 13 C -0.50 -27.24 9.05 23.47 0.21 -27.03 16 14 H 0.08 4.30 7.91 -2.91 -0.02 4.28 16 15 C 0.03 1.58 5.14 85.26 0.44 2.02 16 16 N -0.82 -45.66 10.95 21.83 0.24 -45.42 16 17 Si 0.98 39.67 29.59 68.60 2.03 41.70 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 19 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 20 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 21 C -0.13 -7.12 8.24 23.01 0.19 -6.93 16 22 C -0.09 -2.06 4.51 -19.85 -0.09 -2.15 16 23 C -0.08 -1.63 8.92 22.26 0.20 -1.43 16 24 C -0.14 -2.48 9.99 22.37 0.22 -2.25 16 25 C 0.10 1.81 6.70 22.51 0.15 1.97 16 26 O -0.51 -7.68 13.50 -92.38 -1.25 -8.92 16 27 C -0.15 -2.78 9.99 22.36 0.22 -2.55 16 28 C -0.11 -2.40 8.96 22.25 0.20 -2.20 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.96 6.17 -2.39 -0.01 1.95 16 32 H 0.08 1.61 6.50 -2.39 -0.02 1.59 16 33 H 0.04 1.47 6.16 -2.38 -0.01 1.45 16 34 H 0.39 7.12 9.12 -74.05 -0.68 6.44 16 35 H 0.41 12.23 4.68 -92.71 -0.43 11.80 16 36 H 0.13 4.16 6.38 -2.91 -0.02 4.14 16 37 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 39 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 40 H 0.10 6.28 5.74 -2.91 -0.02 6.26 16 41 H 0.14 2.21 6.17 -2.91 -0.02 2.20 16 42 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.41 2.00 9.06 -74.06 -0.67 1.33 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.13 2.71 6.70 -2.91 -0.02 2.69 16 Total: -1.00 -73.14 370.55 0.11 -73.03 By element: Atomic # 1 Polarization: 47.04 SS G_CDS: -0.70 Total: 46.34 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 3.77 Total: -35.70 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.77 Total: -70.94 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -3.22 Total: -54.43 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -73.14 0.11 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363583279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.734 kcal (2) G-P(sol) polarization free energy of solvation -73.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds