Wall clock time and date at job start Sat Apr 11 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35993 * 117.00053 * 2 1 4 4 C 1.38566 * 120.07379 * 0.03017 * 3 2 1 5 5 C 1.38241 * 119.99867 * 179.70316 * 4 3 2 6 6 C 1.38248 * 120.14691 * 0.54272 * 5 4 3 7 7 C 1.50698 * 119.92662 * 179.72694 * 6 5 4 8 8 C 1.50693 * 109.47250 * 269.72842 * 7 6 5 9 9 O 1.21283 * 120.00141 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00311 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00212 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47151 * 180.02562 * 11 10 8 13 13 C 1.38632 * 119.75213 * 269.72575 * 12 11 10 14 14 C 1.37614 * 120.25123 * 179.71891 * 13 12 11 15 15 C 1.40719 * 119.74124 * 0.57305 * 14 13 12 16 16 C 1.41395 * 120.24246 * 179.67718 * 15 14 13 17 17 H 1.07998 * 119.99970 * 155.30784 * 16 15 14 18 18 C 1.39951 * 120.00207 * 335.31835 * 16 15 14 19 19 N 1.30818 * 119.99753 * 342.22830 * 18 16 15 20 20 Si 1.86797 * 120.00021 * 162.22875 * 18 16 15 21 21 H 1.48500 * 109.47048 * 94.66426 * 20 18 16 22 22 H 1.48498 * 109.47252 * 214.66382 * 20 18 16 23 23 H 1.48496 * 109.47461 * 334.66371 * 20 18 16 24 24 C 1.40704 * 119.51466 * 359.70404 * 15 14 13 25 25 C 1.37620 * 119.74516 * 359.97438 * 24 15 14 26 26 C 1.38238 * 120.14731 * 359.45522 * 6 5 4 27 27 C 1.38566 * 120.00005 * 0.26942 * 26 6 5 28 28 O 1.35990 * 120.07787 * 179.97438 * 27 26 6 29 29 H 1.09006 * 109.47640 * 59.99107 * 1 2 3 30 30 H 1.08998 * 109.47556 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47136 * 299.99270 * 1 2 3 32 32 H 1.08001 * 119.99987 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.92497 * 180.29703 * 5 4 3 34 34 H 1.08998 * 109.47087 * 149.72967 * 7 6 5 35 35 H 1.09003 * 109.47477 * 29.73054 * 7 6 5 36 36 H 0.96998 * 119.99697 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.46977 * 60.00213 * 11 10 8 38 38 H 1.09001 * 109.47430 * 300.00116 * 11 10 8 39 39 H 1.08005 * 119.87401 * 359.97438 * 13 12 11 40 40 H 1.07997 * 120.13194 * 180.28480 * 14 13 12 41 41 H 0.97004 * 119.99893 * 180.02562 * 19 18 16 42 42 H 1.08007 * 120.13445 * 179.97438 * 24 15 14 43 43 H 1.08000 * 119.87742 * 180.02562 * 25 24 15 44 44 H 1.08007 * 120.00376 * 180.24920 * 26 6 5 45 45 H 0.96707 * 113.99869 * 89.99909 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0006 5 6 1.9224 3.6057 0.0068 6 6 3.3029 3.6798 0.0011 7 6 3.9836 5.0243 0.0017 8 6 4.2104 5.4731 -1.4189 9 8 3.8540 4.7707 -2.3411 10 7 4.8085 6.6557 -1.6647 11 6 5.0295 7.0917 -3.0457 12 6 5.7101 8.4363 -3.0451 13 6 4.9470 9.5937 -3.0508 14 6 5.5578 10.8268 -3.0445 15 6 6.9625 10.9101 -3.0445 16 6 7.6011 12.1716 -3.0449 17 1 8.6031 12.2698 -2.6542 18 6 6.9347 13.2932 -3.5515 19 7 5.8928 13.1397 -4.3275 20 14 7.5329 15.0092 -3.1195 21 1 8.4422 15.4996 -4.1863 22 1 6.3692 15.9241 -3.0018 23 1 8.2630 14.9683 -1.8271 24 6 7.7269 9.7288 -3.0445 25 6 7.0948 8.5064 -3.0441 26 6 4.0603 2.5234 0.0005 27 6 3.4359 1.2863 0.0000 28 8 4.1794 0.1477 -0.0011 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 0.2146 2.3197 0.0007 33 1 1.3342 4.5115 0.0122 34 1 4.9418 4.9462 0.5154 35 1 3.3538 5.7503 0.5159 36 1 5.0933 7.2177 -0.9272 37 1 4.0716 7.1693 -3.5599 38 1 5.6600 6.3660 -3.5594 39 1 3.8690 9.5272 -3.0561 40 1 4.9614 11.7272 -3.0443 41 1 5.4310 13.9170 -4.6789 42 1 8.8057 9.7811 -3.0449 43 1 7.6794 7.5984 -3.0438 44 1 5.1386 2.5840 0.0001 45 1 4.3949 -0.1822 0.8820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412289356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:26 Heat of formation + Delta-G solvation = -82.208603 kcal Electronic energy + Delta-G solvation = -27349.062814 eV Core-core repulsion = 23296.292886 eV Total energy + Delta-G solvation = -4052.769928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68992 -39.44942 -38.05878 -37.67653 -36.79099 -34.70095 -33.43129 -32.23130 -30.43207 -30.20996 -29.38668 -28.44983 -27.23660 -26.10718 -23.66183 -22.85256 -21.81275 -21.09842 -20.18087 -20.06568 -18.69034 -17.77141 -17.41113 -16.95237 -16.82912 -16.12716 -15.78976 -15.41169 -15.10167 -15.02107 -14.64285 -14.27296 -14.19131 -14.10529 -13.80780 -13.69300 -13.24315 -12.62912 -12.57808 -12.54866 -12.30856 -12.11273 -12.04508 -11.70804 -11.60809 -11.43782 -11.24109 -11.21097 -11.11192 -10.78220 -10.64290 -10.56959 -9.78750 -9.64173 -9.50678 -9.23666 -9.02167 -8.65387 -8.23379 -7.59171 -7.46759 -6.88592 -4.48193 1.04328 1.12708 2.55869 2.88194 2.95538 2.96271 3.00382 3.00815 3.07140 3.34987 3.78841 3.84053 3.99848 4.51733 4.53377 4.55666 4.71199 4.82588 4.94872 5.08594 5.12114 5.15323 5.20812 5.35043 5.45186 5.57626 5.69892 5.81076 5.90710 5.96393 6.01585 6.22924 6.29327 6.33528 6.36164 6.46910 6.83260 6.84668 6.96037 6.96111 7.16315 7.24504 7.49216 7.54767 7.67992 7.91623 7.93609 7.99724 8.17524 8.50884 8.52928 8.76892 8.84595 10.05572 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.001647 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.168991 B =16998.029635 C =17352.880747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.098 3.902 4 C -0.193 4.193 5 C -0.072 4.072 6 C -0.080 4.080 7 C -0.101 4.101 8 C 0.505 3.495 9 O -0.543 6.543 10 N -0.719 5.719 11 C 0.184 3.816 12 C -0.245 4.245 13 C -0.081 4.081 14 C -0.169 4.169 15 C 0.116 3.884 16 C -0.459 4.459 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.787 5.787 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.229 4.229 25 C -0.070 4.070 26 C -0.091 4.091 27 C 0.075 3.925 28 O -0.486 6.486 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.400 0.600 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.282 0.718 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.135 0.865 45 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.830 -16.918 12.479 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.053 3.947 4 C -0.212 4.212 5 C -0.090 4.090 6 C -0.081 4.081 7 C -0.141 4.141 8 C 0.290 3.710 9 O -0.421 6.421 10 N -0.370 5.370 11 C 0.063 3.937 12 C -0.247 4.247 13 C -0.100 4.100 14 C -0.189 4.189 15 C 0.113 3.887 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.412 5.412 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.249 4.249 25 C -0.089 4.089 26 C -0.110 4.110 27 C 0.029 3.971 28 O -0.294 6.294 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.234 0.766 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.152 0.848 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.216 -17.424 11.021 22.583 hybrid contribution 0.132 1.261 0.796 1.497 sum -9.084 -16.163 11.817 21.986 Atomic orbital electron populations 1.23078 0.78592 1.03917 1.01387 1.86131 1.21134 1.26365 1.88740 1.19437 0.91744 0.84830 0.98714 1.21086 0.99991 0.91806 1.08306 1.20817 0.93814 0.97203 0.97208 1.19089 0.93278 0.93613 1.02079 1.20659 1.02731 0.95048 0.95688 1.20518 0.78065 0.81531 0.90865 1.90712 1.50861 1.54291 1.46209 1.46531 1.60257 1.20013 1.10202 1.19928 0.98924 0.93610 0.81264 1.18987 0.93360 0.92414 1.19918 1.20554 0.97043 0.92763 0.99658 1.21305 0.95017 0.95983 1.06571 1.17672 0.91942 0.92280 0.86761 1.19655 1.01617 0.92062 1.35447 0.90274 1.25955 0.94048 1.01774 0.92528 1.69823 1.16702 1.33012 1.21639 0.86295 0.79332 0.80926 0.80206 1.19472 1.19950 1.18341 1.20967 0.97786 0.92410 1.13713 1.20413 0.93290 0.96204 0.98986 1.21085 1.00438 0.90374 0.99080 1.17638 0.86084 0.86450 1.06900 1.84927 1.71827 1.39673 1.33015 0.92555 0.88247 0.92697 0.85066 0.85486 0.87978 0.87911 0.76565 0.92425 0.92487 0.89425 0.86432 0.90677 0.88897 0.89385 0.84751 0.76208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.39 10.28 -34.22 -0.35 -3.74 16 3 C 0.10 1.15 6.70 -39.12 -0.26 0.89 16 4 C -0.19 -2.01 9.04 -39.46 -0.36 -2.36 16 5 C -0.07 -0.78 9.69 -39.58 -0.38 -1.16 16 6 C -0.08 -0.92 4.37 -104.62 -0.46 -1.37 16 7 C -0.10 -1.04 5.83 -29.04 -0.17 -1.21 16 8 C 0.50 7.44 7.82 -10.99 -0.09 7.36 16 9 O -0.54 -10.31 16.03 5.56 0.09 -10.23 16 10 N -0.72 -10.72 5.55 -61.48 -0.34 -11.06 16 11 C 0.18 3.30 5.79 -5.20 -0.03 3.26 16 12 C -0.25 -4.98 5.27 -104.33 -0.55 -5.53 16 13 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 14 C -0.17 -4.17 8.70 -38.87 -0.34 -4.51 16 15 C 0.12 2.95 5.57 -106.83 -0.60 2.36 16 16 C -0.46 -11.66 9.05 -37.74 -0.34 -12.00 16 17 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 18 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -19.62 10.97 55.55 0.61 -19.01 16 20 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 24 C -0.23 -5.34 9.80 -38.88 -0.38 -5.72 16 25 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 26 C -0.09 -1.07 9.63 -39.46 -0.38 -1.45 16 27 C 0.07 0.90 6.72 -39.12 -0.26 0.64 16 28 O -0.49 -5.46 13.29 -34.21 -0.45 -5.92 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.40 5.25 8.46 -40.82 -0.35 4.91 16 37 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 39 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.12 3.01 6.18 -52.49 -0.32 2.68 16 41 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 42 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 43 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 45 H 0.38 2.33 9.07 45.56 0.41 2.74 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -31.93 387.59 -9.24 -41.17 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.15 Total: 12.06 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -4.46 Total: -21.94 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.27 Total: -30.07 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.72 Total: -19.88 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.93 -9.24 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412289356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.035 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds