Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35993 * 117.00053 * 2 1 4 4 C 1.38566 * 120.07379 * 0.03017 * 3 2 1 5 5 C 1.38241 * 119.99867 * 179.70316 * 4 3 2 6 6 C 1.38248 * 120.14691 * 0.54272 * 5 4 3 7 7 C 1.50698 * 119.92662 * 179.72694 * 6 5 4 8 8 C 1.50693 * 109.47250 * 269.72842 * 7 6 5 9 9 O 1.21283 * 120.00141 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00311 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00212 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47151 * 180.02562 * 11 10 8 13 13 C 1.38632 * 119.75213 * 269.72575 * 12 11 10 14 14 C 1.37614 * 120.25123 * 179.71891 * 13 12 11 15 15 C 1.40719 * 119.74124 * 0.57305 * 14 13 12 16 16 C 1.41395 * 120.24246 * 179.67718 * 15 14 13 17 17 H 1.07998 * 119.99970 * 155.30784 * 16 15 14 18 18 C 1.39951 * 120.00207 * 335.31835 * 16 15 14 19 19 N 1.30818 * 119.99753 * 342.22830 * 18 16 15 20 20 Si 1.86797 * 120.00021 * 162.22875 * 18 16 15 21 21 H 1.48500 * 109.47048 * 94.66426 * 20 18 16 22 22 H 1.48498 * 109.47252 * 214.66382 * 20 18 16 23 23 H 1.48496 * 109.47461 * 334.66371 * 20 18 16 24 24 C 1.40704 * 119.51466 * 359.70404 * 15 14 13 25 25 C 1.37620 * 119.74516 * 359.97438 * 24 15 14 26 26 C 1.38238 * 120.14731 * 359.45522 * 6 5 4 27 27 C 1.38566 * 120.00005 * 0.26942 * 26 6 5 28 28 O 1.35990 * 120.07787 * 179.97438 * 27 26 6 29 29 H 1.09006 * 109.47640 * 59.99107 * 1 2 3 30 30 H 1.08998 * 109.47556 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47136 * 299.99270 * 1 2 3 32 32 H 1.08001 * 119.99987 * 359.97438 * 4 3 2 33 33 H 1.08008 * 119.92497 * 180.29703 * 5 4 3 34 34 H 1.08998 * 109.47087 * 149.72967 * 7 6 5 35 35 H 1.09003 * 109.47477 * 29.73054 * 7 6 5 36 36 H 0.96998 * 119.99697 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.46977 * 60.00213 * 11 10 8 38 38 H 1.09001 * 109.47430 * 300.00116 * 11 10 8 39 39 H 1.08005 * 119.87401 * 359.97438 * 13 12 11 40 40 H 1.07997 * 120.13194 * 180.28480 * 14 13 12 41 41 H 0.97004 * 119.99893 * 180.02562 * 19 18 16 42 42 H 1.08007 * 120.13445 * 179.97438 * 24 15 14 43 43 H 1.08000 * 119.87742 * 180.02562 * 25 24 15 44 44 H 1.08007 * 120.00376 * 180.24920 * 26 6 5 45 45 H 0.96707 * 113.99869 * 89.99909 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0006 5 6 1.9224 3.6057 0.0068 6 6 3.3029 3.6798 0.0011 7 6 3.9836 5.0243 0.0017 8 6 4.2104 5.4731 -1.4189 9 8 3.8540 4.7707 -2.3411 10 7 4.8085 6.6557 -1.6647 11 6 5.0295 7.0917 -3.0457 12 6 5.7101 8.4363 -3.0451 13 6 4.9470 9.5937 -3.0508 14 6 5.5578 10.8268 -3.0445 15 6 6.9625 10.9101 -3.0445 16 6 7.6011 12.1716 -3.0449 17 1 8.6031 12.2698 -2.6542 18 6 6.9347 13.2932 -3.5515 19 7 5.8928 13.1397 -4.3275 20 14 7.5329 15.0092 -3.1195 21 1 8.4422 15.4996 -4.1863 22 1 6.3692 15.9241 -3.0018 23 1 8.2630 14.9683 -1.8271 24 6 7.7269 9.7288 -3.0445 25 6 7.0948 8.5064 -3.0441 26 6 4.0603 2.5234 0.0005 27 6 3.4359 1.2863 0.0000 28 8 4.1794 0.1477 -0.0011 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 0.2146 2.3197 0.0007 33 1 1.3342 4.5115 0.0122 34 1 4.9418 4.9462 0.5154 35 1 3.3538 5.7503 0.5159 36 1 5.0933 7.2177 -0.9272 37 1 4.0716 7.1693 -3.5599 38 1 5.6600 6.3660 -3.5594 39 1 3.8690 9.5272 -3.0561 40 1 4.9614 11.7272 -3.0443 41 1 5.4310 13.9170 -4.6789 42 1 8.8057 9.7811 -3.0449 43 1 7.6794 7.5984 -3.0438 44 1 5.1386 2.5840 0.0001 45 1 4.3949 -0.1822 0.8820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412289356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = -102.392711 kcal Electronic energy + Delta-G solvation = -27349.938063 eV Core-core repulsion = 23296.292886 eV Total energy + Delta-G solvation = -4053.645177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50052 -40.62206 -39.44896 -38.76355 -37.65428 -36.26117 -35.02988 -33.14853 -31.98518 -31.17455 -31.04570 -29.36497 -28.41050 -27.19390 -25.23382 -23.64108 -22.90629 -22.72235 -21.80180 -21.26345 -19.48508 -19.23537 -18.54238 -18.12042 -17.61973 -17.24300 -17.00762 -16.69822 -16.29442 -15.93979 -15.77223 -15.51135 -15.45442 -15.33988 -14.92628 -14.82219 -14.55645 -14.22147 -13.83510 -13.74434 -13.37128 -13.27515 -13.20289 -12.99650 -12.88284 -12.74231 -12.58252 -12.38521 -12.16581 -12.14157 -11.95711 -11.56405 -11.48748 -11.29718 -11.06540 -10.87691 -9.97602 -9.82545 -9.39175 -9.28303 -9.02916 -8.66657 -6.36479 0.24357 0.30214 0.86070 1.13907 1.39310 1.46905 1.54453 1.74480 2.20113 2.27283 2.37586 2.66399 2.86793 3.22640 3.72332 3.73754 3.82576 4.02746 4.10944 4.26805 4.30944 4.33904 4.37304 4.40157 4.44967 4.53257 4.61038 4.66922 4.70369 4.73799 4.84587 4.95450 5.05006 5.15144 5.16346 5.23613 5.35671 5.43382 5.54869 5.55445 5.69001 5.71241 5.91936 6.08998 6.20739 6.28366 6.36655 6.68264 6.71731 6.87990 6.92197 7.01063 7.36543 8.30088 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.001647 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.168991 B =16998.029635 C =17352.880747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.085 3.915 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.093 4.093 7 C -0.091 4.091 8 C 0.507 3.493 9 O -0.588 6.588 10 N -0.713 5.713 11 C 0.194 3.806 12 C -0.226 4.226 13 C -0.082 4.082 14 C -0.191 4.191 15 C 0.085 3.915 16 C -0.497 4.497 17 H 0.077 0.923 18 C 0.036 3.964 19 N -0.822 5.822 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.266 1.266 23 H -0.257 1.257 24 C -0.242 4.242 25 C -0.069 4.069 26 C -0.103 4.103 27 C 0.057 3.943 28 O -0.502 6.502 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.412 0.588 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.289 0.711 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.141 0.859 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -17.395 13.851 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.039 3.961 4 C -0.213 4.213 5 C -0.099 4.099 6 C -0.094 4.094 7 C -0.130 4.130 8 C 0.295 3.705 9 O -0.468 6.468 10 N -0.364 5.364 11 C 0.071 3.929 12 C -0.227 4.227 13 C -0.101 4.101 14 C -0.210 4.210 15 C 0.082 3.918 16 C -0.526 4.526 17 H 0.095 0.905 18 C -0.179 4.179 19 N -0.448 5.448 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.191 1.191 23 H -0.181 1.181 24 C -0.262 4.262 25 C -0.088 4.088 26 C -0.122 4.122 27 C 0.011 3.989 28 O -0.313 6.313 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.248 0.752 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.133 0.867 44 H 0.159 0.841 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.881 -17.914 12.432 23.939 hybrid contribution 0.260 1.171 0.368 1.254 sum -9.621 -16.743 12.799 23.167 Atomic orbital electron populations 1.23366 0.76570 1.05582 1.02272 1.86100 1.23321 1.26285 1.88718 1.19645 0.91952 0.85582 0.98948 1.21371 1.01187 0.91319 1.07453 1.21128 0.93938 0.98058 0.96778 1.19291 0.93755 0.93960 1.02392 1.20685 1.04715 0.94982 0.92628 1.21236 0.76529 0.80458 0.92325 1.90701 1.52596 1.55421 1.48087 1.46304 1.60415 1.20542 1.09188 1.19663 0.98250 0.91938 0.83076 1.19203 0.93207 0.93135 1.17187 1.20748 0.98108 0.92336 0.98899 1.21259 0.94899 0.96462 1.08420 1.18011 0.92653 0.93259 0.87841 1.19897 1.02149 0.93260 1.37310 0.90479 1.26768 0.94008 1.05397 0.91772 1.69872 1.17936 1.34413 1.22529 0.85207 0.78946 0.75814 0.79868 1.18891 1.19057 1.18091 1.21153 0.98185 0.92777 1.14076 1.20682 0.93823 0.96398 0.97854 1.21257 1.00952 0.90555 0.99409 1.17885 0.86682 0.86796 1.07491 1.84857 1.71847 1.39671 1.34968 0.92283 0.86342 0.91099 0.82831 0.83759 0.85342 0.84959 0.75219 0.92977 0.92690 0.87716 0.88163 0.90034 0.88408 0.86714 0.84129 0.74014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.93 10.28 -79.60 -0.82 -7.74 16 3 C 0.08 1.91 6.70 22.57 0.15 2.06 16 4 C -0.19 -3.73 9.04 22.35 0.20 -3.53 16 5 C -0.08 -1.58 9.69 22.27 0.22 -1.37 16 6 C -0.09 -1.96 4.37 -19.86 -0.09 -2.04 16 7 C -0.09 -1.58 5.83 29.10 0.17 -1.41 16 8 C 0.51 13.76 7.82 87.65 0.69 14.44 16 9 O -0.59 -21.54 16.03 -3.04 -0.05 -21.59 16 10 N -0.71 -19.46 5.55 -466.79 -2.59 -22.05 16 11 C 0.19 6.55 5.79 85.63 0.50 7.05 16 12 C -0.23 -8.85 5.27 -19.67 -0.10 -8.96 16 13 C -0.08 -3.55 9.67 22.22 0.21 -3.34 16 14 C -0.19 -9.59 8.70 22.73 0.20 -9.39 16 15 C 0.08 4.41 5.57 -21.29 -0.12 4.29 16 16 C -0.50 -25.97 9.05 23.46 0.21 -25.76 16 17 H 0.08 3.88 7.91 -2.91 -0.02 3.86 16 18 C 0.04 1.76 5.14 85.26 0.44 2.20 16 19 N -0.82 -41.97 10.97 21.83 0.24 -41.73 16 20 Si 0.98 36.91 29.59 68.60 2.03 38.94 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 22 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 23 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 24 C -0.24 -11.32 9.80 22.73 0.22 -11.10 16 25 C -0.07 -2.81 9.67 22.22 0.21 -2.60 16 26 C -0.10 -2.31 9.63 22.35 0.22 -2.09 16 27 C 0.06 1.34 6.72 22.57 0.15 1.50 16 28 O -0.50 -11.14 13.29 -79.57 -1.06 -12.20 16 29 H 0.06 0.64 7.66 -2.38 -0.02 0.62 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 32 H 0.15 2.07 6.30 -2.91 -0.02 2.05 16 33 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 35 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.41 9.57 8.46 -92.71 -0.78 8.79 16 37 H 0.05 1.84 8.08 -2.39 -0.02 1.83 16 38 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 39 H 0.10 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.10 5.32 6.18 -2.91 -0.02 5.30 16 41 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 42 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 45 H 0.40 4.74 9.07 -74.05 -0.67 4.07 16 Total: -1.00 -70.72 387.59 1.93 -68.78 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.41 Total: 36.33 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 4.59 Total: -38.74 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -2.35 Total: -63.78 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.92 Total: -41.53 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Total: -70.72 1.93 -68.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412289356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.609 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds