Wall clock time and date at job start Sat Apr 11 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86800 * 120.00350 * 2 1 4 4 H 1.48497 * 109.46963 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46855 * 300.00304 * 3 2 1 6 6 H 1.48500 * 109.46747 * 60.00053 * 3 2 1 7 7 C 1.38655 * 119.99435 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99917 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00530 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00399 * 185.02679 * 9 7 2 11 11 C 1.38892 * 120.06522 * 354.35213 * 10 9 7 12 12 C 1.38083 * 119.92849 * 179.72333 * 11 10 9 13 13 C 1.38322 * 120.06740 * 0.57645 * 12 11 10 14 14 C 1.38278 * 120.13781 * 359.68038 * 13 12 11 15 15 C 1.50705 * 119.96453 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46984 * 270.02065 * 15 14 13 17 17 O 1.21284 * 119.99928 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99925 * 179.97438 * 16 15 14 19 19 C 1.39925 * 119.99998 * 184.51974 * 18 16 15 20 20 C 1.38889 * 120.06998 * 324.64753 * 19 18 16 21 21 C 1.38091 * 119.92422 * 179.74588 * 20 19 18 22 22 C 1.38297 * 120.07484 * 0.52611 * 21 20 19 23 23 C 1.38262 * 120.14150 * 359.72675 * 22 21 20 24 24 C 1.50696 * 119.96711 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47127 * 270.01920 * 24 23 22 26 26 O 1.42901 * 109.47148 * 180.02562 * 25 24 23 27 27 C 1.38140 * 120.06872 * 0.02562 * 23 22 21 28 28 C 1.38115 * 120.07009 * 0.04005 * 14 13 12 29 29 H 0.97002 * 119.99576 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03701 * 0.02562 * 11 10 9 31 31 H 1.08007 * 119.96565 * 180.27552 * 12 11 10 32 32 H 1.08002 * 119.92801 * 179.70105 * 13 12 11 33 33 H 1.09002 * 109.47282 * 30.01794 * 15 14 13 34 34 H 1.08996 * 109.46974 * 150.01851 * 15 14 13 35 35 H 0.97004 * 119.99841 * 4.51660 * 18 16 15 36 36 H 1.07992 * 120.03772 * 359.97438 * 20 19 18 37 37 H 1.08005 * 119.96042 * 180.23423 * 21 20 19 38 38 H 1.08000 * 119.93439 * 179.74649 * 22 21 20 39 39 H 1.09001 * 109.47440 * 30.02165 * 24 23 22 40 40 H 1.08999 * 109.47333 * 150.02055 * 24 23 22 41 41 H 1.08997 * 109.47139 * 299.99887 * 25 24 23 42 42 H 1.08999 * 109.46904 * 59.99872 * 25 24 23 43 43 H 0.96702 * 114.00178 * 180.02562 * 26 25 24 44 44 H 1.07992 * 120.03482 * 180.02562 * 27 23 22 45 45 H 1.07997 * 120.03687 * 179.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3462 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1049 11 6 3.4572 -3.4399 0.0885 12 6 4.2024 -4.5968 0.2016 13 6 3.5686 -5.8207 0.3193 14 6 2.1875 -5.8890 0.3307 15 6 1.5010 -7.2244 0.4596 16 6 1.2677 -7.8038 -0.9118 17 8 1.6242 -7.1927 -1.8970 18 7 0.6638 -9.0015 -1.0436 19 6 0.5318 -9.5830 -2.3094 20 6 0.3072 -8.7834 -3.4226 21 6 0.1827 -9.3600 -4.6712 22 6 0.2706 -10.7330 -4.8124 23 6 0.4890 -11.5322 -3.7055 24 6 0.5836 -13.0278 -3.8638 25 6 -0.8086 -13.6452 -3.7172 26 8 -0.7188 -15.0636 -3.8667 27 6 0.6195 -10.9612 -2.4544 28 6 1.4366 -4.7348 0.2236 29 1 -0.4849 0.8401 0.0004 30 1 3.9526 -2.4850 -0.0079 31 1 5.2812 -4.5466 0.1934 32 1 4.1536 -6.7246 0.4029 33 1 2.1294 -7.9017 1.0380 34 1 0.5449 -7.0939 0.9665 35 1 0.3206 -9.4603 -0.2609 36 1 0.2336 -7.7117 -3.3124 37 1 0.0117 -8.7385 -5.5377 38 1 0.1688 -11.1819 -5.7894 39 1 0.9840 -13.2643 -4.8496 40 1 1.2434 -13.4334 -3.0968 41 1 -1.2089 -13.4088 -2.7314 42 1 -1.4684 -13.2397 -4.4841 43 1 -1.5664 -15.5220 -3.7858 44 1 0.7905 -11.5859 -1.5903 45 1 0.3580 -4.7889 0.2321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413105449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:34 Heat of formation + Delta-G solvation = -65.848844 kcal Electronic energy + Delta-G solvation = -27495.334898 eV Core-core repulsion = 23443.274383 eV Total energy + Delta-G solvation = -4052.060516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68749 -39.26631 -38.64903 -37.29672 -36.48961 -34.97564 -33.15458 -32.39865 -32.02874 -30.12819 -29.18408 -28.59110 -26.99271 -25.23672 -23.93208 -22.85200 -22.09415 -21.59332 -20.75837 -19.98635 -18.14352 -17.74852 -17.42796 -16.92248 -16.63541 -16.34285 -15.96610 -15.44573 -15.01302 -14.70776 -14.61433 -14.44186 -14.26372 -14.22455 -13.81487 -13.47652 -13.40853 -13.14985 -12.93865 -12.60478 -12.42591 -12.27982 -11.92180 -11.84190 -11.69932 -11.54073 -11.36167 -11.26644 -10.83742 -10.77244 -10.61169 -10.42346 -10.41439 -10.38097 -9.76362 -9.31649 -8.95850 -8.81928 -8.26995 -8.06456 -7.20324 -6.42126 -4.01021 1.11948 1.17712 2.07664 2.40394 2.61123 3.00768 3.14814 3.15448 3.21122 3.54624 3.86274 3.98768 4.50088 4.53566 4.66316 4.76772 4.83044 4.86410 4.99635 5.02758 5.09062 5.11325 5.17661 5.19007 5.33491 5.41247 5.46295 5.60403 5.61849 5.65640 5.75099 5.85115 5.94274 6.16480 6.19120 6.22917 6.34927 6.40128 6.42663 6.66612 6.90382 6.92714 7.09403 7.16131 7.26584 7.26694 7.38773 7.45839 7.83867 8.03076 8.12304 9.03840 9.74501 10.76205 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.001842 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.214189 B =15194.358757 C =15735.675226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.229 4.229 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.036 4.036 15 C -0.091 4.091 16 C 0.513 3.487 17 O -0.497 6.497 18 N -0.683 5.683 19 C 0.154 3.846 20 C -0.120 4.120 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.071 4.071 24 C -0.077 4.077 25 C 0.081 3.919 26 O -0.577 6.577 27 C -0.144 4.144 28 C -0.174 4.174 29 H 0.269 0.731 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.409 0.591 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.381 0.619 44 H 0.124 0.876 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 -25.342 -3.274 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.248 4.248 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.037 4.037 15 C -0.131 4.131 16 C 0.301 3.699 17 O -0.369 6.369 18 N -0.329 5.329 19 C 0.059 3.941 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.152 4.152 23 C -0.072 4.072 24 C -0.115 4.115 25 C 0.003 3.997 26 O -0.383 6.383 27 C -0.164 4.164 28 C -0.193 4.193 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.245 0.755 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.228 0.772 44 H 0.142 0.858 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.946 -24.457 -4.030 24.804 hybrid contribution -0.231 0.543 0.457 0.747 sum -1.177 -23.913 -3.572 24.207 Atomic orbital electron populations 1.70053 1.05934 1.27454 1.46480 1.25280 0.95844 0.98788 0.96655 0.85649 0.79147 0.80430 0.78206 1.19116 1.20182 1.20173 1.21369 0.91814 0.80830 1.52658 0.89061 1.83974 1.34248 1.11387 1.78723 1.19272 0.90249 0.87976 0.92420 1.21191 0.93843 0.99024 1.10746 1.20687 0.98419 0.92308 0.97886 1.20350 0.93270 0.96930 1.10900 1.18616 0.93241 0.91597 1.00230 1.20589 1.02936 0.96089 0.93479 1.21023 0.76472 0.79888 0.92539 1.90763 1.47950 1.58298 1.39842 1.43662 1.59633 1.21725 1.07868 1.17752 0.98949 0.91692 0.85677 1.21423 0.99483 1.01471 0.91674 1.21088 0.98723 0.94669 0.97210 1.21010 1.02343 0.93643 0.98193 1.19380 1.00390 0.94549 0.92850 1.20426 0.96724 0.90400 1.03929 1.22159 0.97044 0.80565 0.99922 1.86453 1.36411 1.19464 1.95962 1.20744 1.05074 0.93026 0.97564 1.19935 0.99041 0.89965 1.10402 0.92148 0.85577 0.87438 0.87925 0.88011 0.87877 0.75497 0.84057 0.85573 0.86083 0.90165 0.90294 0.93425 0.93349 0.77229 0.85807 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 8 H 0.09 2.42 5.21 -52.48 -0.27 2.14 16 9 O -0.18 -5.24 9.76 0.06 0.00 -5.24 16 10 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 11 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 12 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.20 -3.50 9.70 -39.54 -0.38 -3.88 16 14 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.09 -1.14 5.83 -29.03 -0.17 -1.31 16 16 C 0.51 7.16 7.67 -10.98 -0.08 7.08 16 17 O -0.50 -9.28 13.49 5.55 0.07 -9.20 16 18 N -0.68 -7.14 5.34 -9.86 -0.05 -7.19 16 19 C 0.15 1.78 6.29 -83.69 -0.53 1.26 16 20 C -0.12 -1.58 8.69 -39.39 -0.34 -1.93 16 21 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 22 C -0.13 -1.26 9.70 -39.55 -0.38 -1.64 16 23 C -0.07 -0.64 5.13 -104.65 -0.54 -1.18 16 24 C -0.08 -0.58 5.71 -27.89 -0.16 -0.74 16 25 C 0.08 0.53 7.03 37.16 0.26 0.79 16 26 O -0.58 -4.05 13.66 -35.23 -0.48 -4.54 16 27 C -0.14 -1.36 9.62 -39.39 -0.38 -1.74 16 28 C -0.17 -3.76 9.65 -39.40 -0.38 -4.14 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 31 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 35 H 0.41 2.69 8.82 -40.82 -0.36 2.33 16 36 H 0.14 2.19 6.25 -52.49 -0.33 1.86 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 41 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.38 0.97 9.12 45.56 0.42 1.38 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -36.20 387.37 -8.68 -44.88 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.04 Total: 8.15 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -4.76 Total: -23.63 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.71 Total: -32.07 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.41 Total: -18.97 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.20 -8.68 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413105449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.966 kcal (2) G-P(sol) polarization free energy of solvation -36.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds