Wall clock time and date at job start Sat Apr 11 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35892 * 117.00745 * 2 1 4 4 C 1.38761 * 120.05036 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94182 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05542 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.11403 * 359.95448 * 6 5 4 8 8 C 1.50693 * 119.97252 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47381 * 204.99789 * 8 7 6 10 10 O 1.42896 * 109.47463 * 325.00079 * 8 7 6 11 11 C 1.50703 * 109.47219 * 85.00249 * 8 7 6 12 12 O 1.21283 * 119.99839 * 244.99976 * 11 8 7 13 13 N 1.34776 * 120.00122 * 64.99652 * 11 8 7 14 14 C 1.46503 * 119.99519 * 180.02562 * 13 11 8 15 15 C 1.50704 * 109.46775 * 180.02562 * 14 13 11 16 16 C 1.38626 * 119.74833 * 269.72980 * 15 14 13 17 17 C 1.37629 * 120.24885 * 179.71772 * 16 15 14 18 18 C 1.40709 * 119.73866 * 0.57653 * 17 16 15 19 19 C 1.41401 * 120.24048 * 179.67895 * 18 17 16 20 20 H 1.08007 * 119.99703 * 155.30482 * 19 18 17 21 21 C 1.39941 * 119.99955 * 335.30624 * 19 18 17 22 22 N 1.30815 * 120.00221 * 342.23308 * 21 19 18 23 23 Si 1.86803 * 119.99725 * 162.23382 * 21 19 18 24 24 H 1.48501 * 109.47253 * 94.66461 * 23 21 19 25 25 H 1.48502 * 109.47161 * 214.66580 * 23 21 19 26 26 H 1.48501 * 109.47434 * 334.66257 * 23 21 19 27 27 C 1.40714 * 119.51737 * 359.69306 * 18 17 16 28 28 C 1.37619 * 119.74199 * 0.02562 * 27 18 17 29 29 C 1.38168 * 120.05568 * 0.27434 * 7 6 5 30 30 H 1.09003 * 109.46836 * 300.00201 * 1 2 3 31 31 H 1.08999 * 109.47606 * 59.99990 * 1 2 3 32 32 H 1.08999 * 109.47806 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.02856 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.97343 * 180.02562 * 5 4 3 35 35 H 1.07998 * 119.93945 * 179.97438 * 6 5 4 36 36 H 0.96705 * 114.00308 * 59.99673 * 10 8 7 37 37 H 0.96995 * 119.99858 * 0.02562 * 13 11 8 38 38 H 1.08998 * 109.47595 * 299.99770 * 14 13 11 39 39 H 1.08993 * 109.47369 * 60.00312 * 14 13 11 40 40 H 1.08003 * 119.87959 * 359.97438 * 16 15 14 41 41 H 1.07993 * 120.12836 * 180.27140 * 17 16 15 42 42 H 0.97000 * 120.00521 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.13240 * 179.97438 * 27 18 17 44 44 H 1.08000 * 119.87373 * 179.97438 * 28 27 18 45 45 H 1.07994 * 120.03102 * 179.74076 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 4.0561 2.5169 -0.0007 8 6 5.5609 2.5979 -0.0007 9 1 5.9738 1.6871 -0.4342 10 8 5.9773 3.7249 -0.7742 11 6 6.0558 2.7496 1.4147 12 8 6.6226 3.7670 1.7531 13 7 5.8685 1.7547 2.3044 14 6 6.3492 1.9026 3.6804 15 6 6.0175 0.6591 4.4646 16 6 4.8122 0.5757 5.1444 17 6 4.4962 -0.5572 5.8590 18 6 5.4073 -1.6284 5.9079 19 6 5.0965 -2.7947 6.6445 20 1 5.5572 -3.7363 6.3845 21 6 4.1919 -2.7288 7.7102 22 7 3.9008 -1.5737 8.2507 23 14 3.4001 -4.2906 8.3609 24 1 4.1854 -4.8006 9.5135 25 1 2.0120 -3.9963 8.7991 26 1 3.3732 -5.3164 7.2875 27 6 6.6302 -1.5304 5.2186 28 6 6.9225 -0.3902 4.5056 29 6 3.4312 1.2846 -0.0049 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 0.2129 2.3203 -0.0005 34 1 1.3342 4.5113 -0.0011 35 1 3.7924 4.6378 -0.0024 36 1 5.6460 4.5718 -0.4454 37 1 5.4155 0.9409 2.0336 38 1 7.4291 2.0504 3.6742 39 1 5.8673 2.7637 4.1431 40 1 4.1167 1.4013 5.1097 41 1 3.5549 -0.6218 6.3843 42 1 3.2735 -1.5279 8.9891 43 1 7.3369 -2.3464 5.2497 44 1 7.8606 -0.3126 3.9761 45 1 4.0206 0.3797 -0.0084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418179644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:47 Heat of formation + Delta-G solvation = -86.101854 kcal Electronic energy + Delta-G solvation = -28628.910204 eV Core-core repulsion = 24575.971452 eV Total energy + Delta-G solvation = -4052.938752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67782 -39.66915 -38.01274 -37.54225 -36.20830 -34.73564 -33.51391 -31.98490 -30.57647 -30.23958 -29.37882 -27.97778 -27.31897 -26.12552 -23.65670 -22.85983 -21.82032 -21.09801 -20.36653 -20.13956 -18.51018 -17.92452 -17.40547 -16.71675 -16.28107 -16.13523 -15.92259 -15.69440 -15.45207 -14.94863 -14.46758 -14.35463 -13.94821 -13.83909 -13.66823 -13.42355 -13.35941 -12.98855 -12.61070 -12.56431 -12.18774 -12.05468 -11.99262 -11.87105 -11.61582 -11.43822 -11.27941 -11.22250 -11.11249 -10.86264 -10.64598 -10.57303 -9.81631 -9.67774 -9.50756 -9.24608 -8.98652 -8.72687 -8.41491 -7.58403 -7.46438 -6.88216 -4.47744 0.98454 1.22539 2.54442 2.66505 2.96667 2.99158 3.00723 3.05486 3.07729 3.42210 3.62219 3.84222 4.23516 4.37898 4.51627 4.53160 4.77871 4.84284 4.91437 4.92853 4.98035 5.03534 5.24685 5.28533 5.41467 5.58074 5.73057 5.78634 5.88047 6.02998 6.15706 6.22457 6.25263 6.26081 6.32986 6.44974 6.74093 6.85275 6.96304 7.16570 7.17263 7.24781 7.27510 7.49757 7.65568 7.84213 7.94134 7.99794 8.17877 8.35420 8.52450 8.77429 8.85142 10.05918 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003079 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.918467 B = 9091.554082 C =11094.869026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.135 3.865 4 C -0.205 4.205 5 C -0.075 4.075 6 C -0.144 4.144 7 C -0.077 4.077 8 C 0.134 3.866 9 H 0.133 0.867 10 O -0.530 6.530 11 C 0.484 3.516 12 O -0.543 6.543 13 N -0.708 5.708 14 C 0.183 3.817 15 C -0.246 4.246 16 C -0.079 4.079 17 C -0.169 4.169 18 C 0.118 3.882 19 C -0.459 4.459 20 H 0.079 0.921 21 C 0.076 3.924 22 N -0.787 5.787 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.229 4.229 28 C -0.069 4.069 29 C -0.138 4.138 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.382 0.618 37 H 0.401 0.599 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.282 0.718 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 5.678 -14.792 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.089 3.911 4 C -0.224 4.224 5 C -0.093 4.093 6 C -0.162 4.162 7 C -0.078 4.078 8 C 0.071 3.929 9 H 0.151 0.849 10 O -0.336 6.336 11 C 0.268 3.732 12 O -0.421 6.421 13 N -0.359 5.359 14 C 0.062 3.938 15 C -0.248 4.248 16 C -0.098 4.098 17 C -0.188 4.188 18 C 0.115 3.885 19 C -0.488 4.488 20 H 0.097 0.903 21 C -0.142 4.142 22 N -0.412 5.412 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.249 4.249 28 C -0.088 4.088 29 C -0.157 4.157 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.232 0.768 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.993 5.878 -14.680 17.290 hybrid contribution -1.229 -0.531 0.790 1.554 sum -8.222 5.347 -13.889 17.003 Atomic orbital electron populations 1.23081 0.78220 1.04199 1.01276 1.86106 1.21502 1.26595 1.88411 1.18930 0.92135 0.84362 0.95631 1.21290 1.00176 0.92409 1.08508 1.20871 0.94224 0.97148 0.97059 1.20762 0.93989 0.97790 1.03673 1.19981 0.94939 0.93348 0.99522 1.20713 0.89743 0.92443 0.90009 0.84923 1.86606 1.76747 1.16892 1.53307 1.21230 0.79995 0.84213 0.87715 1.90694 1.42919 1.29118 1.79378 1.46542 1.58561 1.19104 1.11715 1.19984 0.98121 0.96532 0.79189 1.18956 0.98978 0.96849 1.10004 1.20542 0.95079 0.97092 0.97136 1.21295 1.00516 0.94478 1.02522 1.17662 0.89507 0.92450 0.88877 1.19661 1.21469 0.95969 1.11659 0.90265 1.25944 0.94957 0.97573 0.95769 1.69819 1.26706 1.26250 1.18391 0.86308 0.78876 0.82038 0.79618 1.19466 1.19955 1.18314 1.20967 0.97997 0.98335 1.07568 1.20405 0.96816 0.93632 0.97963 1.20197 0.91775 0.97826 1.05863 0.92461 0.92746 0.88040 0.85321 0.85488 0.85836 0.76834 0.76415 0.92231 0.92291 0.89524 0.86466 0.90698 0.88874 0.89354 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.67 10.50 -19.40 -0.20 -3.88 16 3 C 0.13 1.59 6.69 -39.21 -0.26 1.33 16 4 C -0.21 -2.09 9.04 -39.43 -0.36 -2.45 16 5 C -0.07 -0.73 10.04 -39.60 -0.40 -1.13 16 6 C -0.14 -1.54 9.32 -39.56 -0.37 -1.91 16 7 C -0.08 -0.89 4.95 -104.65 -0.52 -1.41 16 8 C 0.13 1.62 3.62 -29.04 -0.11 1.51 16 9 H 0.13 1.38 8.05 -51.93 -0.42 0.96 16 10 O -0.53 -6.54 12.79 -55.09 -0.70 -7.24 16 11 C 0.48 7.40 7.15 -10.98 -0.08 7.32 16 12 O -0.54 -10.07 16.32 -14.31 -0.23 -10.30 16 13 N -0.71 -11.02 5.50 -61.47 -0.34 -11.36 16 14 C 0.18 3.30 5.79 -5.19 -0.03 3.27 16 15 C -0.25 -5.06 5.27 -104.33 -0.55 -5.61 16 16 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 17 C -0.17 -4.20 8.70 -38.87 -0.34 -4.53 16 18 C 0.12 3.01 5.57 -106.83 -0.60 2.41 16 19 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 20 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 21 C 0.08 1.85 5.14 -17.35 -0.09 1.76 16 22 N -0.79 -19.67 10.97 55.55 0.61 -19.06 16 23 Si 0.91 17.93 29.59 -169.99 -5.03 12.90 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 27 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 28 C -0.07 -1.47 9.67 -39.66 -0.38 -1.85 16 29 C -0.14 -1.62 9.47 -39.43 -0.37 -2.00 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 31 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.13 1.02 6.30 -52.49 -0.33 0.68 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.12 6.61 -52.49 -0.35 0.77 16 36 H 0.38 3.87 7.13 45.56 0.33 4.20 16 37 H 0.40 5.80 8.31 -40.82 -0.34 5.46 16 38 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.12 3.03 6.18 -52.49 -0.32 2.71 16 42 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 43 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 44 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -30.18 384.44 -9.82 -40.00 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -5.15 Total: 15.17 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -4.56 Total: -22.03 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.27 Total: -30.41 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.14 Total: -21.42 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.18 -9.82 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418179644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.102 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds