Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35892 * 117.00745 * 2 1 4 4 C 1.38761 * 120.05036 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94182 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05542 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.11403 * 359.95448 * 6 5 4 8 8 C 1.50693 * 119.97252 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47381 * 204.99789 * 8 7 6 10 10 O 1.42896 * 109.47463 * 325.00079 * 8 7 6 11 11 C 1.50703 * 109.47219 * 85.00249 * 8 7 6 12 12 O 1.21283 * 119.99839 * 244.99976 * 11 8 7 13 13 N 1.34776 * 120.00122 * 64.99652 * 11 8 7 14 14 C 1.46503 * 119.99519 * 180.02562 * 13 11 8 15 15 C 1.50704 * 109.46775 * 180.02562 * 14 13 11 16 16 C 1.38626 * 119.74833 * 269.72980 * 15 14 13 17 17 C 1.37629 * 120.24885 * 179.71772 * 16 15 14 18 18 C 1.40709 * 119.73866 * 0.57653 * 17 16 15 19 19 C 1.41401 * 120.24048 * 179.67895 * 18 17 16 20 20 H 1.08007 * 119.99703 * 155.30482 * 19 18 17 21 21 C 1.39941 * 119.99955 * 335.30624 * 19 18 17 22 22 N 1.30815 * 120.00221 * 342.23308 * 21 19 18 23 23 Si 1.86803 * 119.99725 * 162.23382 * 21 19 18 24 24 H 1.48501 * 109.47253 * 94.66461 * 23 21 19 25 25 H 1.48502 * 109.47161 * 214.66580 * 23 21 19 26 26 H 1.48501 * 109.47434 * 334.66257 * 23 21 19 27 27 C 1.40714 * 119.51737 * 359.69306 * 18 17 16 28 28 C 1.37619 * 119.74199 * 0.02562 * 27 18 17 29 29 C 1.38168 * 120.05568 * 0.27434 * 7 6 5 30 30 H 1.09003 * 109.46836 * 300.00201 * 1 2 3 31 31 H 1.08999 * 109.47606 * 59.99990 * 1 2 3 32 32 H 1.08999 * 109.47806 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.02856 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.97343 * 180.02562 * 5 4 3 35 35 H 1.07998 * 119.93945 * 179.97438 * 6 5 4 36 36 H 0.96705 * 114.00308 * 59.99673 * 10 8 7 37 37 H 0.96995 * 119.99858 * 0.02562 * 13 11 8 38 38 H 1.08998 * 109.47595 * 299.99770 * 14 13 11 39 39 H 1.08993 * 109.47369 * 60.00312 * 14 13 11 40 40 H 1.08003 * 119.87959 * 359.97438 * 16 15 14 41 41 H 1.07993 * 120.12836 * 180.27140 * 17 16 15 42 42 H 0.97000 * 120.00521 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.13240 * 179.97438 * 27 18 17 44 44 H 1.08000 * 119.87373 * 179.97438 * 28 27 18 45 45 H 1.07994 * 120.03102 * 179.74076 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 4.0561 2.5169 -0.0007 8 6 5.5609 2.5979 -0.0007 9 1 5.9738 1.6871 -0.4342 10 8 5.9773 3.7249 -0.7742 11 6 6.0558 2.7496 1.4147 12 8 6.6226 3.7670 1.7531 13 7 5.8685 1.7547 2.3044 14 6 6.3492 1.9026 3.6804 15 6 6.0175 0.6591 4.4646 16 6 4.8122 0.5757 5.1444 17 6 4.4962 -0.5572 5.8590 18 6 5.4073 -1.6284 5.9079 19 6 5.0965 -2.7947 6.6445 20 1 5.5572 -3.7363 6.3845 21 6 4.1919 -2.7288 7.7102 22 7 3.9008 -1.5737 8.2507 23 14 3.4001 -4.2906 8.3609 24 1 4.1854 -4.8006 9.5135 25 1 2.0120 -3.9963 8.7991 26 1 3.3732 -5.3164 7.2875 27 6 6.6302 -1.5304 5.2186 28 6 6.9225 -0.3902 4.5056 29 6 3.4312 1.2846 -0.0049 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 0.2129 2.3203 -0.0005 34 1 1.3342 4.5113 -0.0011 35 1 3.7924 4.6378 -0.0024 36 1 5.6460 4.5718 -0.4454 37 1 5.4155 0.9409 2.0336 38 1 7.4291 2.0504 3.6742 39 1 5.8673 2.7637 4.1431 40 1 4.1167 1.4013 5.1097 41 1 3.5549 -0.6218 6.3843 42 1 3.2735 -1.5279 8.9891 43 1 7.3369 -2.3464 5.2497 44 1 7.8606 -0.3126 3.9761 45 1 4.0206 0.3797 -0.0084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418179644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = -104.079219 kcal Electronic energy + Delta-G solvation = -28629.689761 eV Core-core repulsion = 24575.971452 eV Total energy + Delta-G solvation = -4053.718309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62930 -40.70732 -39.55463 -38.66738 -37.19324 -36.27100 -35.13685 -32.96929 -31.97236 -31.24768 -31.15970 -29.18349 -28.23219 -27.38324 -25.25236 -23.66136 -22.92206 -22.76666 -21.85322 -21.49984 -19.36348 -19.24857 -19.07598 -17.65928 -17.24135 -17.13613 -17.06753 -16.72306 -16.65074 -16.26892 -15.92954 -15.60890 -15.52909 -15.09438 -14.87902 -14.59223 -14.28783 -14.21623 -13.87292 -13.83518 -13.55332 -13.39293 -13.30533 -13.00129 -12.91399 -12.74160 -12.72271 -12.41058 -12.31006 -12.17451 -12.00339 -11.71826 -11.50588 -11.31544 -11.06294 -10.85156 -10.10376 -9.87838 -9.40487 -9.29229 -9.21695 -8.67669 -6.37649 0.16059 0.41614 0.83212 1.12671 1.38236 1.45206 1.47514 1.53381 2.17463 2.20464 2.36256 2.66117 2.76428 3.33850 3.49781 3.69219 3.78280 3.80168 4.02977 4.12569 4.17103 4.24204 4.28798 4.30545 4.38756 4.49901 4.50244 4.64050 4.64622 4.73021 4.76960 4.95480 5.03310 5.13849 5.24084 5.33232 5.36949 5.39204 5.43040 5.45156 5.67392 5.69158 5.89529 6.07674 6.18521 6.35054 6.36786 6.41838 6.58607 6.66849 6.91017 6.99630 7.11593 8.29099 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003079 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.918467 B = 9091.554082 C =11094.869026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.116 3.884 4 C -0.206 4.206 5 C -0.077 4.077 6 C -0.154 4.154 7 C -0.085 4.085 8 C 0.146 3.854 9 H 0.151 0.849 10 O -0.537 6.537 11 C 0.487 3.513 12 O -0.575 6.575 13 N -0.704 5.704 14 C 0.192 3.808 15 C -0.228 4.228 16 C -0.082 4.082 17 C -0.190 4.190 18 C 0.088 3.912 19 C -0.497 4.497 20 H 0.077 0.923 21 C 0.037 3.963 22 N -0.821 5.821 23 Si 0.980 3.020 24 H -0.263 1.263 25 H -0.266 1.266 26 H -0.258 1.258 27 C -0.242 4.242 28 C -0.067 4.067 29 C -0.153 4.153 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.391 0.609 37 H 0.408 0.592 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.289 0.711 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 6.124 -15.972 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.071 3.929 4 C -0.225 4.225 5 C -0.095 4.095 6 C -0.172 4.172 7 C -0.086 4.086 8 C 0.083 3.917 9 H 0.168 0.832 10 O -0.343 6.343 11 C 0.274 3.726 12 O -0.456 6.456 13 N -0.355 5.355 14 C 0.069 3.931 15 C -0.230 4.230 16 C -0.100 4.100 17 C -0.210 4.210 18 C 0.085 3.915 19 C -0.526 4.526 20 H 0.095 0.905 21 C -0.178 4.178 22 N -0.447 5.447 23 Si 0.800 3.200 24 H -0.188 1.188 25 H -0.190 1.190 26 H -0.181 1.181 27 C -0.262 4.262 28 C -0.086 4.086 29 C -0.171 4.171 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.242 0.758 37 H 0.244 0.756 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.135 0.865 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.730 6.328 -15.881 18.761 hybrid contribution -0.987 -0.534 1.054 1.540 sum -8.717 5.795 -14.826 18.149 Atomic orbital electron populations 1.23336 0.76456 1.05501 1.02286 1.86068 1.23487 1.26939 1.88552 1.19168 0.92459 0.85008 0.96292 1.21602 1.01356 0.92041 1.07470 1.21226 0.94151 0.98083 0.96000 1.21065 0.94672 0.98158 1.03338 1.19923 0.94433 0.93699 1.00551 1.20652 0.90262 0.93094 0.87660 0.83179 1.86594 1.76999 1.17491 1.53257 1.21770 0.78960 0.83194 0.88712 1.90680 1.44378 1.30298 1.80229 1.46326 1.58616 1.19725 1.10837 1.19767 0.98374 0.94787 0.80127 1.19176 0.97765 0.97388 1.08669 1.20717 0.96042 0.96637 0.96644 1.21237 1.00192 0.95695 1.03877 1.17989 0.90553 0.93025 0.89902 1.19908 1.23506 0.96107 1.13091 0.90452 1.26755 0.94818 1.00805 0.95467 1.69869 1.27433 1.28257 1.19091 0.85226 0.78071 0.77758 0.78905 1.18780 1.19025 1.18123 1.21163 0.97603 0.99504 1.07927 1.20686 0.97893 0.92758 0.97252 1.20350 0.92263 0.98150 1.06385 0.92089 0.91002 0.86759 0.83203 0.82827 0.84465 0.75832 0.75600 0.91848 0.92661 0.88166 0.88259 0.90032 0.88293 0.86512 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.65 10.50 -92.33 -0.97 -8.62 16 3 C 0.12 2.62 6.69 22.51 0.15 2.77 16 4 C -0.21 -3.79 9.04 22.37 0.20 -3.59 16 5 C -0.08 -1.32 10.04 22.26 0.22 -1.09 16 6 C -0.15 -2.99 9.32 22.28 0.21 -2.79 16 7 C -0.09 -1.84 4.95 -19.88 -0.10 -1.94 16 8 C 0.15 3.28 3.62 29.10 0.11 3.38 16 9 H 0.15 2.81 8.05 -2.39 -0.02 2.79 16 10 O -0.54 -12.26 12.79 -129.99 -1.66 -13.93 16 11 C 0.49 14.12 7.15 87.66 0.63 14.75 16 12 O -0.58 -20.56 16.32 15.95 0.26 -20.30 16 13 N -0.70 -20.77 5.50 -466.78 -2.57 -23.34 16 14 C 0.19 6.61 5.79 85.63 0.50 7.10 16 15 C -0.23 -9.15 5.27 -19.68 -0.10 -9.25 16 16 C -0.08 -3.63 9.67 22.22 0.21 -3.41 16 17 C -0.19 -9.73 8.70 22.73 0.20 -9.53 16 18 C 0.09 4.61 5.57 -21.29 -0.12 4.49 16 19 C -0.50 -26.17 9.05 23.46 0.21 -25.96 16 20 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 21 C 0.04 1.83 5.14 85.26 0.44 2.27 16 22 N -0.82 -42.10 10.97 21.82 0.24 -41.86 16 23 Si 0.98 37.11 29.59 68.60 2.03 39.14 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 26 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 27 C -0.24 -11.43 9.80 22.73 0.22 -11.20 16 28 C -0.07 -2.77 9.67 22.22 0.21 -2.56 16 29 C -0.15 -3.45 9.47 22.37 0.21 -3.24 16 30 H 0.06 0.79 7.66 -2.39 -0.02 0.78 16 31 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 34 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.14 2.18 6.61 -2.91 -0.02 2.17 16 36 H 0.39 7.25 7.13 -74.05 -0.53 6.72 16 37 H 0.41 11.18 8.31 -92.71 -0.77 10.41 16 38 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 39 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 40 H 0.10 4.11 8.06 -2.91 -0.02 4.08 16 41 H 0.10 5.36 6.18 -2.91 -0.02 5.34 16 42 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 43 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 44 H 0.12 4.13 8.06 -2.91 -0.02 4.10 16 45 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -65.69 384.44 1.59 -64.10 By element: Atomic # 1 Polarization: 43.50 SS G_CDS: -0.26 Total: 43.24 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.52 Total: -38.43 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -2.33 Total: -65.19 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -2.37 Total: -42.85 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -65.69 1.59 -64.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418179644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.981 kcal (2) G-P(sol) polarization free energy of solvation -65.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds