Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47327 * 179.97438 * 18 17 15 20 20 C 1.50693 * 109.47293 * 180.02562 * 19 18 17 21 21 C 1.38287 * 119.94163 * 90.00600 * 20 19 18 22 22 C 1.38123 * 120.05706 * 179.97438 * 21 20 19 23 23 C 1.38754 * 119.94361 * 0.02562 * 22 21 20 24 24 O 1.35901 * 120.05926 * 180.02562 * 23 22 21 25 25 C 1.38716 * 119.88791 * 0.02562 * 23 22 21 26 26 C 1.50699 * 120.02947 * 180.02562 * 25 23 22 27 27 O 1.42897 * 109.47523 * 180.02562 * 26 25 23 28 28 C 1.38168 * 119.94329 * 359.70117 * 25 23 22 29 29 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 35 35 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 36 36 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 37 37 H 1.08994 * 109.47306 * 300.00695 * 19 18 17 38 38 H 1.09004 * 109.46817 * 60.00199 * 19 18 17 39 39 H 1.07998 * 119.97620 * 359.97438 * 21 20 19 40 40 H 1.07999 * 120.03166 * 179.97438 * 22 21 20 41 41 H 0.96699 * 113.99699 * 90.00048 * 24 23 22 42 42 H 1.09005 * 109.47210 * 300.00588 * 26 25 23 43 43 H 1.09000 * 109.46874 * 59.99701 * 26 25 23 44 44 H 0.96697 * 114.00265 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.97234 * 180.31297 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9747 -5.6742 -3.7552 20 6 4.3742 -6.6559 -4.7282 21 6 4.1587 -6.2815 -6.0419 22 6 3.6090 -7.1795 -6.9359 23 6 3.2724 -8.4580 -6.5147 24 8 2.7318 -9.3436 -7.3924 25 6 3.4885 -8.8307 -5.1962 26 6 3.1247 -10.2186 -4.7355 27 8 3.4396 -10.3582 -3.3486 28 6 4.0440 -7.9305 -4.3072 29 1 -0.4850 0.8401 -0.0004 30 1 3.3593 0.3859 1.6626 31 1 5.7824 0.3567 2.0391 32 1 7.2124 -1.2430 0.8399 33 1 6.2398 -2.8388 -0.7535 34 1 5.4032 -3.8788 -2.0211 35 1 3.1973 -5.5630 -2.5427 36 1 3.2857 -4.3396 -3.8326 37 1 5.6340 -4.9904 -4.2897 38 1 5.5462 -6.2140 -3.0001 39 1 4.4205 -5.2861 -6.3692 40 1 3.4405 -6.8865 -7.9616 41 1 3.3847 -9.8830 -7.8592 42 1 2.0572 -10.3825 -4.8836 43 1 3.6882 -10.9522 -5.3120 44 1 3.2316 -11.2291 -2.9837 45 1 4.2171 -8.2219 -3.2818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434327452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = -87.126979 kcal Electronic energy + Delta-G solvation = -28020.488783 eV Core-core repulsion = 23967.505579 eV Total energy + Delta-G solvation = -4052.983205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.29948 -39.03258 -37.47457 -37.12647 -36.83116 -34.65736 -33.60998 -32.13684 -31.60431 -30.43995 -30.05523 -27.87039 -26.25893 -25.34908 -23.62552 -22.36950 -22.05939 -20.93438 -20.74298 -19.41826 -18.72910 -17.64210 -17.56504 -16.69025 -16.07439 -15.87335 -15.69447 -15.26184 -15.03757 -14.96448 -14.64406 -14.11481 -14.07502 -14.02448 -13.86879 -13.44357 -13.17587 -12.78438 -12.60830 -12.52847 -12.29126 -12.20478 -11.95336 -11.59995 -11.51219 -11.36137 -11.09208 -10.91929 -10.68418 -10.67173 -10.61924 -10.42302 -10.14233 -9.79066 -9.23793 -8.98788 -8.63311 -8.43048 -8.37110 -7.79949 -7.57046 -6.87941 -4.46249 0.96424 1.15297 2.12794 2.61927 3.09820 3.18749 3.30110 3.34539 3.81095 3.87006 3.95615 3.99173 4.04818 4.54062 4.62523 4.76484 4.78859 4.94670 5.09735 5.14928 5.17214 5.25821 5.40814 5.42296 5.53244 5.70975 5.79607 5.83206 5.92144 6.03615 6.06435 6.09558 6.22815 6.24228 6.43951 6.46818 6.52864 6.62788 6.81445 7.10642 7.13363 7.25338 7.27940 7.34081 7.41171 7.60605 7.77770 8.03578 8.35154 8.50394 8.66246 8.89275 9.39970 10.08781 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.002263 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.707413 B =12368.358716 C =12928.173412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.289 1.289 7 C -0.401 4.401 8 H 0.124 0.876 9 C 0.116 3.884 10 C -0.226 4.226 11 C -0.066 4.066 12 C -0.255 4.255 13 C -0.041 4.041 14 C -0.248 4.248 15 C 0.560 3.440 16 O -0.527 6.527 17 N -0.749 5.749 18 C 0.131 3.869 19 C -0.091 4.091 20 C -0.083 4.083 21 C -0.097 4.097 22 C -0.142 4.142 23 C 0.101 3.899 24 O -0.498 6.498 25 C -0.118 4.118 26 C 0.125 3.875 27 O -0.568 6.568 28 C -0.075 4.075 29 H 0.287 0.713 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.391 0.609 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.386 0.614 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.383 0.617 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.445 -16.321 -11.666 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.165 1.165 6 H -0.216 1.216 7 C -0.428 4.428 8 H 0.142 0.858 9 C 0.111 3.889 10 C -0.245 4.245 11 C -0.085 4.085 12 C -0.275 4.275 13 C -0.060 4.060 14 C -0.253 4.253 15 C 0.353 3.647 16 O -0.405 6.405 17 N -0.405 5.405 18 C 0.007 3.993 19 C -0.129 4.129 20 C -0.084 4.084 21 C -0.115 4.115 22 C -0.160 4.160 23 C 0.056 3.944 24 O -0.307 6.307 25 C -0.119 4.119 26 C 0.048 3.952 27 O -0.374 6.374 28 C -0.093 4.093 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.242 0.758 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.231 0.769 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.893 -15.420 -11.678 21.289 hybrid contribution 0.962 0.008 -0.152 0.974 sum 9.855 -15.412 -11.830 21.785 Atomic orbital electron populations 1.69573 1.08219 1.30317 1.33530 1.26387 0.94872 1.01652 0.91291 0.86391 0.81338 0.79793 0.79179 1.19426 1.16543 1.21631 1.20206 0.90869 0.96629 1.35084 0.85833 1.17563 0.93161 0.89505 0.88661 1.21147 0.94695 1.04996 1.03617 1.20736 0.93743 0.96701 0.97273 1.20282 0.97848 1.03193 1.06131 1.20776 0.93546 0.96034 0.95683 1.19412 0.92749 1.06934 1.06231 1.18356 0.86271 0.80023 0.80044 1.90736 1.14241 1.68614 1.66870 1.45987 1.09881 1.40276 1.44335 1.21086 0.94819 0.91249 0.92135 1.20795 0.97910 0.96750 0.97402 1.19805 0.99641 0.94595 0.94346 1.21012 0.98391 0.99442 0.92702 1.21317 1.00520 0.93491 1.00675 1.18140 0.98100 0.89992 0.88152 1.84840 1.36016 1.52885 1.56993 1.19987 1.01774 0.96396 0.93710 1.20669 0.99194 0.93213 0.82154 1.86458 1.88037 1.38861 1.24066 1.20844 0.96446 0.91863 1.00103 0.90275 0.87802 0.88601 0.88558 0.88680 0.77476 0.91919 0.91953 0.90276 0.90234 0.85307 0.85228 0.75821 0.91897 0.92656 0.76908 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.89 13.92 55.56 0.77 -21.11 16 2 C 0.08 2.12 5.47 -17.30 -0.09 2.03 16 3 Si 0.91 20.98 24.51 -169.99 -4.17 16.81 16 4 H -0.27 -5.90 6.76 56.52 0.38 -5.51 16 5 H -0.24 -5.73 6.72 56.52 0.38 -5.35 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.40 -11.43 8.31 -37.82 -0.31 -11.75 16 8 H 0.12 3.91 5.96 -52.48 -0.31 3.60 16 9 C 0.12 3.02 5.03 -106.54 -0.54 2.49 16 10 C -0.23 -5.38 7.00 -38.88 -0.27 -5.65 16 11 C -0.07 -1.38 10.01 -39.60 -0.40 -1.78 16 12 C -0.26 -5.02 10.03 -39.37 -0.39 -5.42 16 13 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16 14 C -0.25 -5.88 5.92 -104.37 -0.62 -6.50 16 15 C 0.56 12.94 7.72 -12.52 -0.10 12.84 16 16 O -0.53 -14.37 13.53 5.26 0.07 -14.30 16 17 N -0.75 -13.00 5.51 -61.38 -0.34 -13.34 16 18 C 0.13 2.02 5.66 -4.04 -0.02 1.99 16 19 C -0.09 -1.01 5.46 -27.89 -0.15 -1.16 16 20 C -0.08 -0.95 5.13 -104.61 -0.54 -1.48 16 21 C -0.10 -1.03 9.69 -39.61 -0.38 -1.41 16 22 C -0.14 -1.43 9.99 -39.43 -0.39 -1.82 16 23 C 0.10 1.03 6.68 -39.21 -0.26 0.77 16 24 O -0.50 -4.18 12.93 -19.43 -0.25 -4.43 16 25 C -0.12 -1.28 5.89 -104.47 -0.62 -1.90 16 26 C 0.13 1.07 6.91 36.01 0.25 1.32 16 27 O -0.57 -5.04 12.14 -35.23 -0.43 -5.47 16 28 C -0.07 -0.88 9.03 -39.60 -0.36 -1.23 16 29 H 0.29 7.09 8.29 -40.82 -0.34 6.75 16 30 H 0.10 2.44 5.00 -52.49 -0.26 2.18 16 31 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.10 1.52 6.42 -52.49 -0.34 1.18 16 34 H 0.39 5.59 6.52 -40.82 -0.27 5.33 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.39 1.31 9.06 45.56 0.41 1.72 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 1.53 9.12 45.56 0.42 1.95 16 45 H 0.14 1.66 7.00 -52.49 -0.37 1.29 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -34.70 374.96 -8.38 -43.08 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.11 Total: 12.96 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -5.57 Total: -19.86 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.44 Total: -34.45 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.61 Total: -24.19 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.17 Total: 16.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.70 -8.38 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434327452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.049 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds