Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47327 * 179.97438 * 18 17 15 20 20 C 1.50693 * 109.47293 * 180.02562 * 19 18 17 21 21 C 1.38287 * 119.94163 * 90.00600 * 20 19 18 22 22 C 1.38123 * 120.05706 * 179.97438 * 21 20 19 23 23 C 1.38754 * 119.94361 * 0.02562 * 22 21 20 24 24 O 1.35901 * 120.05926 * 180.02562 * 23 22 21 25 25 C 1.38716 * 119.88791 * 0.02562 * 23 22 21 26 26 C 1.50699 * 120.02947 * 180.02562 * 25 23 22 27 27 O 1.42897 * 109.47523 * 180.02562 * 26 25 23 28 28 C 1.38168 * 119.94329 * 359.70117 * 25 23 22 29 29 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 35 35 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 36 36 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 37 37 H 1.08994 * 109.47306 * 300.00695 * 19 18 17 38 38 H 1.09004 * 109.46817 * 60.00199 * 19 18 17 39 39 H 1.07998 * 119.97620 * 359.97438 * 21 20 19 40 40 H 1.07999 * 120.03166 * 179.97438 * 22 21 20 41 41 H 0.96699 * 113.99699 * 90.00048 * 24 23 22 42 42 H 1.09005 * 109.47210 * 300.00588 * 26 25 23 43 43 H 1.09000 * 109.46874 * 59.99701 * 26 25 23 44 44 H 0.96697 * 114.00265 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.97234 * 180.31297 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9747 -5.6742 -3.7552 20 6 4.3742 -6.6559 -4.7282 21 6 4.1587 -6.2815 -6.0419 22 6 3.6090 -7.1795 -6.9359 23 6 3.2724 -8.4580 -6.5147 24 8 2.7318 -9.3436 -7.3924 25 6 3.4885 -8.8307 -5.1962 26 6 3.1247 -10.2186 -4.7355 27 8 3.4396 -10.3582 -3.3486 28 6 4.0440 -7.9305 -4.3072 29 1 -0.4850 0.8401 -0.0004 30 1 3.3593 0.3859 1.6626 31 1 5.7824 0.3567 2.0391 32 1 7.2124 -1.2430 0.8399 33 1 6.2398 -2.8388 -0.7535 34 1 5.4032 -3.8788 -2.0211 35 1 3.1973 -5.5630 -2.5427 36 1 3.2857 -4.3396 -3.8326 37 1 5.6340 -4.9904 -4.2897 38 1 5.5462 -6.2140 -3.0001 39 1 4.4205 -5.2861 -6.3692 40 1 3.4405 -6.8865 -7.9616 41 1 3.3847 -9.8830 -7.8592 42 1 2.0572 -10.3825 -4.8836 43 1 3.6882 -10.9522 -5.3120 44 1 3.2316 -11.2291 -2.9837 45 1 4.2171 -8.2219 -3.2818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434327452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -115.049451 kcal Electronic energy + Delta-G solvation = -28021.699593 eV Core-core repulsion = 23967.505579 eV Total energy + Delta-G solvation = -4054.194014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.10994 -40.74101 -38.85118 -38.06739 -37.72294 -36.13432 -35.43985 -33.31712 -32.45129 -32.27780 -31.60054 -28.99075 -27.22788 -26.92524 -24.90243 -23.78035 -23.11581 -22.60865 -21.75350 -21.01589 -19.45565 -19.42000 -18.36430 -18.29655 -17.23870 -16.93446 -16.78215 -16.71794 -16.07520 -15.96806 -15.80895 -15.77220 -15.65234 -15.30460 -14.81622 -14.64346 -14.59908 -14.44598 -14.15324 -13.79161 -13.59026 -13.27243 -13.22759 -13.00610 -12.69008 -12.57616 -12.49912 -12.23662 -12.16627 -12.14105 -11.98607 -11.60737 -11.39906 -11.26752 -11.07967 -10.33941 -10.01318 -9.77663 -9.50451 -9.41262 -9.39053 -8.81933 -6.48308 0.17524 0.34444 0.35316 0.84885 1.23333 1.37201 1.46459 2.10112 2.26692 2.37576 2.64450 2.72007 3.22733 3.27334 3.54522 3.78157 3.89380 4.02791 4.07013 4.16253 4.26880 4.30343 4.33981 4.45769 4.46757 4.50911 4.57778 4.64728 4.73548 4.82358 4.84862 4.94386 5.01871 5.09976 5.11342 5.30638 5.30857 5.46009 5.47985 5.60986 5.62374 5.70144 5.87640 5.88358 5.97541 6.28657 6.48355 6.68666 6.79575 6.82111 6.87526 6.93608 7.65225 8.22651 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.002263 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.707413 B =12368.358716 C =12928.173412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.034 3.966 3 Si 0.969 3.031 4 H -0.247 1.247 5 H -0.248 1.248 6 H -0.281 1.281 7 C -0.451 4.451 8 H 0.070 0.930 9 C 0.098 3.902 10 C -0.247 4.247 11 C -0.062 4.062 12 C -0.229 4.229 13 C -0.039 4.039 14 C -0.265 4.265 15 C 0.551 3.449 16 O -0.581 6.581 17 N -0.724 5.724 18 C 0.133 3.867 19 C -0.074 4.074 20 C -0.098 4.098 21 C -0.103 4.103 22 C -0.149 4.149 23 C 0.103 3.897 24 O -0.504 6.504 25 C -0.135 4.135 26 C 0.126 3.874 27 O -0.589 6.589 28 C -0.090 4.090 29 H 0.293 0.707 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.411 0.589 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.409 0.591 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.402 0.598 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.412 -16.414 -12.225 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.180 4.180 3 Si 0.791 3.209 4 H -0.172 1.172 5 H -0.171 1.171 6 H -0.207 1.207 7 C -0.480 4.480 8 H 0.087 0.913 9 C 0.094 3.906 10 C -0.266 4.266 11 C -0.080 4.080 12 C -0.248 4.248 13 C -0.057 4.057 14 C -0.270 4.270 15 C 0.344 3.656 16 O -0.462 6.462 17 N -0.379 5.379 18 C 0.009 3.991 19 C -0.112 4.112 20 C -0.099 4.099 21 C -0.121 4.121 22 C -0.167 4.167 23 C 0.058 3.942 24 O -0.317 6.317 25 C -0.136 4.136 26 C 0.049 3.951 27 O -0.398 6.398 28 C -0.108 4.108 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.248 0.752 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.269 0.731 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.253 0.747 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.931 -15.570 -12.244 24.216 hybrid contribution -0.288 -0.240 -0.025 0.376 sum 13.643 -15.810 -12.269 24.220 Atomic orbital electron populations 1.69635 1.09589 1.31340 1.37254 1.27152 0.95575 1.04568 0.90702 0.85460 0.79457 0.75780 0.80177 1.17188 1.17122 1.20747 1.19945 0.92576 0.95516 1.39973 0.91254 1.17843 0.92529 0.91050 0.89201 1.21241 0.96474 1.05112 1.03731 1.21265 0.92409 0.97135 0.97214 1.20966 1.00196 1.00487 1.03139 1.21257 0.92017 0.96794 0.95649 1.19801 0.94675 1.06353 1.06178 1.18606 0.85952 0.80580 0.80474 1.90740 1.16791 1.70306 1.68404 1.45707 1.10400 1.38820 1.42971 1.21143 0.96296 0.90511 0.91122 1.20673 0.96327 0.96574 0.97585 1.19850 1.00617 0.94566 0.94848 1.21235 0.98220 1.00194 0.92500 1.21585 1.00205 0.93434 1.01521 1.18222 0.97230 0.90428 0.88293 1.84780 1.37117 1.52965 1.56813 1.20321 1.01729 0.97476 0.94052 1.20717 0.99430 0.92627 0.82355 1.86412 1.88205 1.40743 1.24447 1.20891 0.97377 0.92532 0.99989 0.89675 0.88110 0.84529 0.83597 0.83884 0.75160 0.94170 0.93641 0.87999 0.88785 0.83940 0.83520 0.73134 0.92056 0.90107 0.74721 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.91 13.92 21.88 0.30 -50.60 16 2 C 0.03 1.94 5.47 85.37 0.47 2.41 16 3 Si 0.97 44.50 24.51 68.60 1.68 46.18 16 4 H -0.25 -10.33 6.76 99.48 0.67 -9.66 16 5 H -0.25 -11.36 6.72 99.48 0.67 -10.69 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.45 -27.79 8.31 23.41 0.19 -27.59 16 8 H 0.07 4.91 5.96 -2.91 -0.02 4.89 16 9 C 0.10 5.22 5.03 -21.11 -0.11 5.11 16 10 C -0.25 -11.43 7.00 22.72 0.16 -11.27 16 11 C -0.06 -2.29 10.01 22.26 0.22 -2.07 16 12 C -0.23 -7.54 10.03 22.41 0.22 -7.31 16 13 C -0.04 -1.37 9.52 22.50 0.21 -1.15 16 14 C -0.27 -12.42 5.92 -19.70 -0.12 -12.54 16 15 C 0.55 26.17 7.72 86.67 0.67 26.84 16 16 O -0.58 -34.22 13.53 -4.08 -0.06 -34.28 16 17 N -0.72 -24.51 5.51 -466.36 -2.57 -27.07 16 18 C 0.13 4.14 5.66 86.38 0.49 4.62 16 19 C -0.07 -1.52 5.46 29.84 0.16 -1.36 16 20 C -0.10 -2.16 5.13 -19.85 -0.10 -2.26 16 21 C -0.10 -2.07 9.69 22.25 0.22 -1.85 16 22 C -0.15 -2.81 9.99 22.37 0.22 -2.58 16 23 C 0.10 1.98 6.68 22.51 0.15 2.13 16 24 O -0.50 -7.55 12.93 -92.44 -1.20 -8.74 16 25 C -0.14 -2.85 5.89 -19.77 -0.12 -2.97 16 26 C 0.13 2.03 6.91 71.24 0.49 2.52 16 27 O -0.59 -10.13 12.14 -148.98 -1.81 -11.94 16 28 C -0.09 -2.10 9.03 22.25 0.20 -1.90 16 29 H 0.29 15.61 8.29 -92.71 -0.77 14.84 16 30 H 0.10 4.66 5.00 -2.91 -0.01 4.65 16 31 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 32 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.14 3.64 6.42 -2.91 -0.02 3.62 16 34 H 0.41 10.38 6.52 -92.71 -0.60 9.77 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.65 8.08 -2.39 -0.02 1.63 16 38 H 0.09 1.67 8.08 -2.39 -0.02 1.66 16 39 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.41 1.82 9.06 -74.06 -0.67 1.15 16 42 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.40 2.90 9.12 -74.06 -0.68 2.23 16 45 H 0.13 3.15 7.00 -2.91 -0.02 3.13 16 Total: -1.00 -84.34 374.96 -0.95 -85.29 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -0.95 Total: 32.38 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 3.64 Total: -31.22 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.26 Total: -77.68 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -3.06 Total: -54.96 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.68 Total: 46.18 kcal Total: -84.34 -0.95 -85.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434327452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.760 kcal (2) G-P(sol) polarization free energy of solvation -84.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds