Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35998 * 117.00293 * 2 1 4 4 C 1.38571 * 120.06786 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99216 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.92029 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47145 * 90.00458 * 6 5 4 8 8 O 1.21284 * 119.99673 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00224 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99909 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.46727 * 179.97438 * 10 9 7 12 12 C 1.38629 * 119.75270 * 269.72327 * 11 10 9 13 13 C 1.37622 * 120.25073 * 179.72445 * 12 11 10 14 14 C 1.40711 * 119.74255 * 0.57160 * 13 12 11 15 15 C 1.41400 * 120.24519 * 179.67986 * 14 13 12 16 16 H 1.07993 * 120.00417 * 204.40825 * 15 14 13 17 17 C 1.39949 * 119.99722 * 24.41101 * 15 14 13 18 18 N 1.30829 * 120.00062 * 17.84366 * 17 15 14 19 19 Si 1.86798 * 120.00043 * 197.84420 * 17 15 14 20 20 H 1.48505 * 109.46835 * 60.00206 * 19 17 15 21 21 H 1.48500 * 109.47096 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47401 * 300.00354 * 19 17 15 23 23 C 1.40712 * 119.51307 * 359.70710 * 14 13 12 24 24 C 1.37613 * 119.74639 * 359.97438 * 23 14 13 25 25 C 1.38245 * 120.15042 * 0.27685 * 5 4 3 26 26 C 1.38242 * 120.14928 * 359.44718 * 25 5 4 27 27 C 1.38570 * 119.99289 * 0.55173 * 26 25 5 28 28 O 1.35994 * 120.07185 * 179.70608 * 27 26 25 29 29 H 1.08999 * 109.47419 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47323 * 300.00379 * 1 2 3 31 31 H 1.08999 * 109.47477 * 60.00055 * 1 2 3 32 32 H 1.07990 * 120.00235 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47644 * 329.99824 * 6 5 4 34 34 H 1.09005 * 109.46880 * 210.00071 * 6 5 4 35 35 H 0.96996 * 119.99912 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.46823 * 60.00094 * 10 9 7 37 37 H 1.09000 * 109.46799 * 299.99548 * 10 9 7 38 38 H 1.08007 * 119.87515 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.12595 * 180.28405 * 13 12 11 40 40 H 0.96994 * 119.99970 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.12635 * 179.97438 * 23 14 13 42 42 H 1.08000 * 119.87953 * 180.02562 * 24 23 14 43 43 H 1.08002 * 119.93074 * 179.70742 * 25 5 4 44 44 H 1.07998 * 120.00637 * 180.25371 * 26 25 5 45 45 H 0.96700 * 113.99837 * 270.02543 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 1.1016 4.8696 0.0011 7 6 0.8276 5.2906 1.4219 8 8 1.2562 4.6291 2.3437 9 7 0.1062 6.4021 1.6682 10 6 -0.1606 6.8110 3.0495 11 6 -0.9802 8.0756 3.0495 12 6 -0.3444 9.3075 3.0566 13 6 -1.0828 10.4688 3.0509 14 6 -2.4883 10.4024 3.0500 15 6 -3.2574 11.5889 3.0510 16 1 -4.2660 11.5784 3.4369 17 6 -2.7116 12.7770 2.5519 18 7 -1.6565 12.7382 1.7794 19 14 -3.4895 14.4181 2.9888 20 1 -3.4625 14.6021 4.4621 21 1 -2.7288 15.5152 2.3384 22 1 -4.8959 14.4417 2.5127 23 6 -3.1229 9.1465 3.0487 24 6 -2.3645 7.9982 3.0477 25 6 3.3029 3.6798 -0.0047 26 6 4.0603 2.5233 0.0005 27 6 3.4359 1.2863 0.0000 28 8 4.1794 0.1476 -0.0010 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2146 2.3197 0.0005 33 1 0.1575 4.6898 -0.5132 34 1 1.6504 5.6592 -0.5124 35 1 -0.2362 6.9313 0.9309 36 1 0.7834 6.9903 3.5641 37 1 -0.7100 6.0216 3.5624 38 1 0.7346 9.3560 3.0625 39 1 -0.5853 11.4274 3.0519 40 1 -1.2784 13.5616 1.4331 41 1 -4.2011 9.0839 3.0484 42 1 -2.8493 7.0332 3.0463 43 1 3.7908 4.6433 -0.0090 44 1 5.1386 2.5839 0.0001 45 1 4.3945 -0.1809 -0.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469414974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = -102.115209 kcal Electronic energy + Delta-G solvation = -27541.586756 eV Core-core repulsion = 23487.953612 eV Total energy + Delta-G solvation = -4053.633143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53200 -40.61840 -39.44076 -38.76310 -37.68667 -36.26780 -35.03956 -33.12499 -31.97556 -31.19741 -31.14949 -29.29352 -28.39271 -27.28090 -25.26002 -23.36450 -22.96976 -22.86977 -21.80743 -21.31048 -19.61393 -19.23645 -18.45110 -18.07039 -17.57016 -17.21941 -16.90181 -16.84198 -16.34137 -16.15961 -15.83060 -15.47660 -15.44569 -15.21746 -14.98239 -14.75350 -14.59359 -14.17673 -13.84314 -13.78811 -13.47989 -13.27233 -13.15542 -13.03884 -12.82105 -12.72435 -12.53041 -12.48359 -12.24105 -12.10685 -11.99950 -11.54921 -11.51988 -11.29023 -11.09354 -10.89277 -9.99436 -9.76623 -9.39472 -9.28155 -9.08155 -8.66921 -6.36570 0.15625 0.38407 0.86082 1.13790 1.38872 1.48120 1.51688 1.70748 2.19405 2.25618 2.35654 2.66007 2.86566 3.24395 3.61112 3.73740 3.85306 4.01845 4.11904 4.23930 4.28946 4.31928 4.33412 4.34267 4.51971 4.55566 4.60890 4.63381 4.67092 4.70230 4.81611 4.93539 5.04948 5.13640 5.14572 5.28395 5.35499 5.43043 5.52695 5.54154 5.68577 5.71980 5.91583 6.08692 6.20505 6.26387 6.36261 6.67820 6.68173 6.88244 6.91883 7.00765 7.32392 8.29287 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026929 B = 0.001754 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.535709 B =15957.604446 C =16436.022963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.085 3.915 4 C -0.187 4.187 5 C -0.042 4.042 6 C -0.098 4.098 7 C 0.509 3.491 8 O -0.585 6.585 9 N -0.714 5.714 10 C 0.193 3.807 11 C -0.226 4.226 12 C -0.082 4.082 13 C -0.192 4.192 14 C 0.085 3.915 15 C -0.497 4.497 16 H 0.076 0.924 17 C 0.037 3.963 18 N -0.818 5.818 19 Si 0.980 3.020 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.244 4.244 24 C -0.068 4.068 25 C -0.134 4.134 26 C -0.110 4.110 27 C 0.056 3.944 28 O -0.501 6.501 29 H 0.121 0.879 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.411 0.589 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.289 0.711 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.143 0.857 44 H 0.154 0.846 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -16.566 -9.840 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.039 3.961 4 C -0.206 4.206 5 C -0.042 4.042 6 C -0.137 4.137 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.365 5.365 10 C 0.071 3.929 11 C -0.228 4.228 12 C -0.101 4.101 13 C -0.212 4.212 14 C 0.083 3.917 15 C -0.526 4.526 16 H 0.094 0.906 17 C -0.179 4.179 18 N -0.443 5.443 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.263 4.263 24 C -0.087 4.087 25 C -0.152 4.152 26 C -0.128 4.128 27 C 0.010 3.990 28 O -0.312 6.312 29 H 0.139 0.861 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.247 0.753 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.134 0.866 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 7.053 -17.036 -8.723 20.398 hybrid contribution -0.733 1.178 -0.449 1.458 sum 6.321 -15.858 -9.172 19.380 Atomic orbital electron populations 1.23335 0.76774 1.05581 1.01994 1.86093 1.23091 1.26239 1.88788 1.19601 0.92175 0.85239 0.99039 1.21171 1.00706 0.91294 1.07382 1.19334 0.94018 0.93551 0.97327 1.20759 1.03245 0.96632 0.93061 1.21088 0.77211 0.79949 0.92063 1.90704 1.52982 1.54928 1.47984 1.46335 1.54118 1.26669 1.09372 1.19706 0.97374 0.92982 0.82886 1.19197 0.93257 0.93051 1.17255 1.20755 0.98104 0.92366 0.98886 1.21269 0.94226 0.97206 1.08464 1.18003 0.92848 0.93036 0.87848 1.19863 1.01130 0.94052 1.37556 0.90599 1.26734 0.94840 1.04495 0.91843 1.69849 1.20275 1.31676 1.22494 0.85285 0.79271 0.75810 0.79594 1.18706 1.19157 1.18350 1.21160 0.98234 0.92749 1.14170 1.20678 0.93206 0.96995 0.97810 1.21091 0.93018 0.99127 1.02008 1.21428 1.01521 0.90392 0.99438 1.17976 0.86385 0.87164 1.07439 1.84841 1.71657 1.39765 1.34963 0.86088 0.92935 0.91176 0.84005 0.85290 0.84964 0.75338 0.92820 0.92377 0.87753 0.88124 0.89989 0.88415 0.86639 0.83907 0.82856 0.73982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.41 10.28 -79.66 -0.82 -8.23 16 3 C 0.09 2.03 6.70 22.57 0.15 2.18 16 4 C -0.19 -4.10 8.69 22.35 0.19 -3.91 16 5 C -0.04 -0.89 4.37 -19.86 -0.09 -0.98 16 6 C -0.10 -1.75 5.83 29.10 0.17 -1.58 16 7 C 0.51 13.82 7.82 87.66 0.69 14.50 16 8 O -0.59 -21.16 16.03 -3.04 -0.05 -21.21 16 9 N -0.71 -19.62 5.55 -466.78 -2.59 -22.21 16 10 C 0.19 6.40 5.79 85.63 0.50 6.90 16 11 C -0.23 -8.73 5.27 -19.68 -0.10 -8.83 16 12 C -0.08 -3.53 9.67 22.22 0.21 -3.32 16 13 C -0.19 -9.60 8.70 22.73 0.20 -9.40 16 14 C 0.09 4.39 5.57 -21.29 -0.12 4.27 16 15 C -0.50 -25.81 9.05 23.46 0.21 -25.59 16 16 H 0.08 3.81 7.91 -2.91 -0.02 3.78 16 17 C 0.04 1.78 5.14 85.26 0.44 2.22 16 18 N -0.82 -40.82 10.95 21.83 0.24 -40.58 16 19 Si 0.98 36.71 29.59 68.60 2.03 38.74 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 21 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 C -0.24 -11.26 9.80 22.73 0.22 -11.04 16 24 C -0.07 -2.74 9.67 22.22 0.21 -2.52 16 25 C -0.13 -2.76 9.69 22.27 0.22 -2.54 16 26 C -0.11 -2.23 9.98 22.35 0.22 -2.01 16 27 C 0.06 1.28 6.72 22.57 0.15 1.43 16 28 O -0.50 -10.47 13.29 -79.62 -1.06 -11.53 16 29 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 0.80 7.66 -2.39 -0.02 0.78 16 31 H 0.07 0.78 7.66 -2.39 -0.02 0.77 16 32 H 0.14 2.61 6.30 -2.92 -0.02 2.59 16 33 H 0.13 1.65 8.08 -2.39 -0.02 1.63 16 34 H 0.13 1.70 8.08 -2.38 -0.02 1.68 16 35 H 0.41 10.00 8.46 -92.71 -0.78 9.21 16 36 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 37 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 38 H 0.10 4.06 8.06 -2.91 -0.02 4.04 16 39 H 0.10 5.31 6.16 -2.91 -0.02 5.29 16 40 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 41 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 42 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 43 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.40 4.31 9.06 -74.06 -0.67 3.64 16 Total: -1.00 -68.71 387.56 1.93 -66.78 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.41 Total: 37.09 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 4.59 Total: -38.84 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -2.35 Total: -62.80 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.93 Total: -40.97 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -68.71 1.93 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469414974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.334 kcal (2) G-P(sol) polarization free energy of solvation -68.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds