Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35370 * 117.00504 * 2 1 4 4 C 1.36091 * 125.58474 * 180.02562 * 3 2 1 5 5 C 1.39908 * 107.17997 * 179.97438 * 4 3 2 6 6 C 1.37828 * 106.67570 * 0.02562 * 5 4 3 7 7 C 1.46135 * 126.03176 * 179.97438 * 6 5 4 8 8 O 1.21772 * 119.99655 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99863 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99671 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46899 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47127 * 294.99629 * 11 10 9 13 13 C 1.53000 * 109.46965 * 174.99772 * 11 10 9 14 14 O 1.42904 * 109.46863 * 305.00071 * 13 11 10 15 15 N 1.46898 * 109.46954 * 54.99949 * 11 10 9 16 16 C 1.46906 * 110.99888 * 204.99693 * 15 11 10 17 17 C 1.50699 * 109.47140 * 180.02562 * 16 15 11 18 18 O 1.21297 * 119.99980 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00037 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99944 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00055 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99682 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00492 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99897 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46948 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47378 * 120.00054 * 24 22 20 27 27 H 1.48501 * 109.47174 * 239.99969 * 24 22 20 28 28 O 1.34016 * 125.57532 * 0.27058 * 3 2 1 29 29 H 1.09008 * 109.46800 * 299.99809 * 1 2 3 30 30 H 1.09004 * 109.47135 * 59.99522 * 1 2 3 31 31 H 1.08999 * 109.47585 * 180.02562 * 1 2 3 32 32 H 1.08004 * 126.40726 * 359.97438 * 4 3 2 33 33 H 1.07996 * 126.66167 * 180.02562 * 5 4 3 34 34 H 0.96994 * 120.00511 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47009 * 59.99406 * 10 9 7 36 36 H 1.09004 * 109.46662 * 299.99426 * 10 9 7 37 37 H 1.08996 * 109.46989 * 64.99842 * 13 11 10 38 38 H 1.09000 * 109.47349 * 185.00317 * 13 11 10 39 39 H 0.96703 * 113.99787 * 179.97438 * 14 13 11 40 40 H 1.00902 * 111.00533 * 81.04100 * 15 11 10 41 41 H 1.09000 * 109.47033 * 300.00113 * 16 15 11 42 42 H 1.09001 * 109.46544 * 60.00058 * 16 15 11 43 43 H 0.96996 * 119.99844 * 359.97438 * 19 17 16 44 44 H 0.97001 * 120.00876 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4091 -0.0005 5 6 3.5985 2.7925 -0.0009 6 6 2.3522 3.3810 0.0000 7 6 2.0795 4.8167 0.0005 8 8 3.0019 5.6116 0.0006 9 7 0.8070 5.2608 0.0018 10 6 0.5337 6.7002 0.0029 11 6 -0.9787 6.9320 0.0037 12 1 -1.4040 6.5585 -0.9277 13 6 -1.2650 8.4296 0.1306 14 8 -0.6091 8.9432 1.2917 15 7 -1.5825 6.2202 1.1380 16 6 -2.9936 5.9088 0.8732 17 6 -3.5780 5.1811 2.0563 18 8 -2.8869 4.9446 3.0247 19 7 -4.8683 4.7920 2.0380 20 6 -5.4001 4.1304 3.1146 21 1 -4.7850 3.9206 3.9772 22 6 -6.7304 3.7298 3.0959 23 7 -7.4790 3.9855 2.0466 24 14 -7.4553 2.8290 4.5631 25 1 -6.4130 2.6661 5.6082 26 1 -8.5906 3.6122 5.1134 27 1 -7.9384 1.4920 4.1338 28 8 1.4265 2.3957 0.0051 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.1528 0.6453 -0.0006 33 1 4.5515 3.3005 -0.0017 34 1 0.0723 4.6277 0.0021 35 1 0.9700 7.1535 -0.8872 36 1 0.9714 7.1524 0.8929 37 1 -0.8944 8.9466 -0.7545 38 1 -2.3397 8.5878 0.2206 39 1 -0.7469 9.8896 1.4350 40 1 -1.4830 6.7493 1.9914 41 1 -3.5450 6.8343 0.7077 42 1 -3.0663 5.2790 -0.0135 43 1 -5.4208 4.9808 1.2635 44 1 -8.4076 3.7055 2.0334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676593329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = -138.297644 kcal Electronic energy + Delta-G solvation = -29591.049584 eV Core-core repulsion = 25124.998189 eV Total energy + Delta-G solvation = -4466.051395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.84305 -39.61879 -38.74976 -38.46436 -37.65400 -35.50335 -34.22096 -33.73106 -33.22550 -31.30743 -30.51222 -29.47470 -27.50201 -26.23630 -25.75098 -23.99096 -22.66920 -22.08031 -20.94553 -20.29945 -19.39486 -18.99053 -18.06081 -17.75652 -17.56187 -17.19318 -16.50214 -15.83320 -15.62031 -15.46109 -15.38490 -14.88675 -14.88104 -14.44275 -14.33166 -14.00876 -13.86024 -13.60796 -13.39012 -13.25782 -13.11041 -12.98352 -12.41293 -12.32923 -12.13174 -11.87503 -11.72103 -11.66336 -11.52434 -11.32860 -11.10994 -10.38889 -10.30541 -10.27652 -10.18580 -10.15962 -9.57479 -9.05720 -8.54840 -8.19405 -8.15420 -8.01845 -6.47507 -3.88327 0.98178 2.09100 2.23734 2.92729 3.11812 3.19401 3.23021 3.28652 3.30344 3.84134 3.88677 4.11502 4.35274 4.64482 4.69245 4.75492 4.87124 4.95510 4.97523 5.08614 5.15285 5.18041 5.18393 5.25731 5.39594 5.41185 5.48928 5.63855 5.67785 5.71819 5.87650 5.99874 6.14807 6.19444 6.33362 6.45549 6.94556 7.08518 7.41534 7.50074 7.56538 7.61343 8.00791 8.14823 8.55279 9.12587 9.48178 9.99654 10.70198 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008093 B = 0.003228 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.103006 B = 8672.578819 C =11594.418213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.264 6.264 3 C 0.217 3.783 4 C -0.246 4.246 5 C -0.086 4.086 6 C -0.098 4.098 7 C 0.605 3.395 8 O -0.533 6.533 9 N -0.702 5.702 10 C 0.137 3.863 11 C 0.074 3.926 12 H 0.095 0.905 13 C 0.047 3.953 14 O -0.565 6.565 15 N -0.660 5.660 16 C 0.048 3.952 17 C 0.440 3.560 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 O -0.185 6.185 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.412 0.588 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.381 0.619 40 H 0.364 0.636 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.801 1.366 -10.352 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.120 3.880 4 C -0.265 4.265 5 C -0.107 4.107 6 C -0.148 4.148 7 C 0.392 3.608 8 O -0.413 6.413 9 N -0.352 5.352 10 C 0.013 3.987 11 C -0.037 4.037 12 H 0.113 0.887 13 C -0.033 4.033 14 O -0.370 6.370 15 N -0.294 5.294 16 C -0.085 4.085 17 C 0.225 3.775 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 O -0.084 6.084 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.249 0.751 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.228 0.772 40 H 0.185 0.815 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.850 0.367 -9.855 17.826 hybrid contribution -2.176 0.739 0.188 2.306 sum 12.674 1.106 -9.666 15.978 Atomic orbital electron populations 1.23237 0.76007 1.05162 1.03296 1.86386 1.23587 1.18787 1.89012 1.20841 0.89545 0.78339 0.99261 1.20743 0.92041 0.96887 1.16876 1.21941 0.97743 0.92502 0.98467 1.21957 0.86989 0.87469 1.18396 1.16312 0.83551 0.83850 0.77083 1.90881 1.44455 1.53753 1.52211 1.45699 1.07223 1.09037 1.73199 1.21277 0.94241 0.80421 1.02791 1.21994 0.95096 0.90376 0.96239 0.88729 1.22831 0.96425 0.95676 0.88395 1.86497 1.75429 1.29009 1.46090 1.60134 1.14830 1.49433 1.04995 1.21757 0.88795 0.99125 0.98830 1.19775 0.83151 0.85452 0.89086 1.90551 1.60016 1.60064 1.35718 1.41864 1.08906 1.50809 1.18488 1.19751 0.94453 1.31751 0.96864 0.87878 1.25253 0.96186 0.98126 0.98341 1.69611 1.08302 1.47295 1.29129 0.85814 0.78921 0.78779 0.80934 1.19196 1.20740 1.20733 1.84010 1.37614 1.14230 1.72579 0.91131 0.91670 0.87064 0.82014 0.81630 0.75142 0.91255 0.89941 0.93005 0.92953 0.77231 0.81451 0.93872 0.89683 0.77531 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.74 101.05 1.09 1.24 16 2 O -0.26 -2.98 10.55 -41.03 -0.43 -3.41 16 3 C 0.22 2.70 7.86 29.96 0.24 2.94 16 4 C -0.25 -2.75 10.89 -39.73 -0.43 -3.19 16 5 C -0.09 -1.03 10.66 -39.11 -0.42 -1.45 16 6 C -0.10 -1.35 7.15 -36.56 -0.26 -1.61 16 7 C 0.61 9.03 7.77 -13.09 -0.10 8.92 16 8 O -0.53 -9.10 16.87 5.12 0.09 -9.02 16 9 N -0.70 -9.47 5.38 -61.78 -0.33 -9.80 16 10 C 0.14 1.69 5.26 -4.04 -0.02 1.66 16 11 C 0.07 0.83 2.57 -67.71 -0.17 0.66 16 12 H 0.09 0.91 7.80 -51.93 -0.40 0.50 16 13 C 0.05 0.44 6.72 37.16 0.25 0.69 16 14 O -0.56 -5.88 12.05 -35.23 -0.42 -6.31 16 15 N -0.66 -9.93 5.31 -107.99 -0.57 -10.50 16 16 C 0.05 0.77 5.96 -4.97 -0.03 0.74 16 17 C 0.44 9.94 7.82 -10.99 -0.09 9.86 16 18 O -0.58 -15.39 15.78 5.54 0.09 -15.30 16 19 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -23.92 13.05 55.50 0.72 -23.19 16 24 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 O -0.18 -2.50 9.88 -19.27 -0.19 -2.69 16 29 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.41 5.56 7.89 -40.82 -0.32 5.24 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.19 7.40 -51.93 -0.38 0.81 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 39 H 0.38 2.31 9.12 45.56 0.42 2.72 16 40 H 0.36 6.24 7.64 -39.29 -0.30 5.94 16 41 H 0.04 0.62 7.36 -51.93 -0.38 0.24 16 42 H 0.08 1.21 8.06 -51.93 -0.42 0.80 16 43 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 44 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -34.05 386.41 -5.48 -39.53 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -4.97 Total: 20.39 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -0.19 Total: 12.68 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.24 Total: -57.30 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.87 Total: -36.73 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.05 -5.48 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676593329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.766 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds