Wall clock time and date at job start Sat Apr 11 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35370 * 116.99849 * 2 1 4 4 C 1.36092 * 125.57808 * 179.97438 * 3 2 1 5 5 C 1.39907 * 107.17542 * 179.97438 * 4 3 2 6 6 C 1.37833 * 106.68016 * 0.02562 * 5 4 3 7 7 C 1.46124 * 126.03290 * 179.97438 * 6 5 4 8 8 O 1.21761 * 120.00228 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99936 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00115 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47370 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46500 * 65.00131 * 11 10 9 13 13 C 1.52996 * 109.47314 * 184.99828 * 11 10 9 14 14 O 1.42900 * 109.46993 * 55.00541 * 13 11 10 15 15 N 1.46901 * 109.47236 * 305.00500 * 11 10 9 16 16 C 1.46895 * 110.99816 * 154.99590 * 15 11 10 17 17 C 1.50706 * 109.47182 * 179.97438 * 16 15 11 18 18 O 1.21297 * 119.99667 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.72734 * 17 16 15 20 20 C 1.37095 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99401 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00554 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46783 * 60.00161 * 24 22 20 26 26 H 1.48496 * 109.47291 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46865 * 300.00343 * 24 22 20 28 28 O 1.34011 * 125.57599 * 0.26531 * 3 2 1 29 29 H 1.08996 * 109.47407 * 299.99519 * 1 2 3 30 30 H 1.08993 * 109.47073 * 60.00272 * 1 2 3 31 31 H 1.09009 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.07997 * 126.41366 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.66492 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00135 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46798 * 59.99948 * 10 9 7 36 36 H 1.08994 * 109.47247 * 299.99955 * 10 9 7 37 37 H 1.09003 * 109.47323 * 175.00279 * 13 11 10 38 38 H 1.09002 * 109.47449 * 295.00609 * 13 11 10 39 39 H 0.96697 * 114.00205 * 179.97438 * 14 13 11 40 40 H 1.00902 * 110.99849 * 278.94969 * 15 11 10 41 41 H 1.09001 * 109.47613 * 60.00104 * 16 15 11 42 42 H 1.08998 * 109.47678 * 300.00000 * 16 15 11 43 43 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 44 44 H 0.97004 * 120.00112 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0005 5 6 3.5983 2.7926 -0.0003 6 6 2.3520 3.3811 -0.0007 7 6 2.0792 4.8166 -0.0010 8 8 3.0015 5.6116 -0.0014 9 7 0.8068 5.2608 -0.0008 10 6 0.5333 6.7001 -0.0017 11 6 -0.9791 6.9319 -0.0019 12 1 -1.4040 6.5582 0.9297 13 6 -1.2655 8.4295 -0.1285 14 8 -0.6102 8.9432 -1.2898 15 7 -1.5834 6.2201 -1.1360 16 6 -2.9942 5.9086 -0.8705 17 6 -3.5792 5.1808 -2.0534 18 8 -2.8886 4.9445 -3.0222 19 7 -4.8680 4.7873 -2.0325 20 6 -5.4000 4.1248 -3.1084 21 1 -4.7864 3.9186 -3.9730 22 6 -6.7286 3.7186 -3.0867 23 7 -7.4751 3.9690 -2.0346 24 14 -7.4537 2.8165 -4.5530 25 1 -6.6979 1.5592 -4.7838 26 1 -8.8781 2.4958 -4.2820 27 1 -7.3616 3.6779 -5.7590 28 8 1.4263 2.3957 0.0050 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 4.1528 0.6455 0.0013 33 1 4.5513 3.3007 -0.0006 34 1 0.0720 4.6276 -0.0009 35 1 0.9700 7.1523 -0.8922 36 1 0.9706 7.1535 0.8878 37 1 -2.3403 8.5876 -0.2180 38 1 -0.8946 8.9465 0.7565 39 1 -0.7488 9.8894 -1.4334 40 1 -1.4843 6.7493 -1.9893 41 1 -3.5458 6.8340 -0.7048 42 1 -3.0667 5.2787 0.0161 43 1 -5.4191 4.9721 -1.2559 44 1 -8.4027 3.6858 -2.0195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676593330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:19 Heat of formation + Delta-G solvation = -138.208681 kcal Electronic energy + Delta-G solvation = -29591.919204 eV Core-core repulsion = 25125.871667 eV Total energy + Delta-G solvation = -4466.047537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.84212 -39.61928 -38.74821 -38.46321 -37.65281 -35.50322 -34.21974 -33.72928 -33.22492 -31.30661 -30.51147 -29.47373 -27.50131 -26.23393 -25.74999 -23.98757 -22.66859 -22.07956 -20.94427 -20.29861 -19.39234 -18.98956 -18.05977 -17.75538 -17.56152 -17.19211 -16.50095 -15.83153 -15.62019 -15.45864 -15.38470 -14.88404 -14.87879 -14.43806 -14.33822 -14.00997 -13.86215 -13.60691 -13.38849 -13.25276 -13.10980 -12.98324 -12.41030 -12.32801 -12.13140 -11.87055 -11.71966 -11.66111 -11.52158 -11.32528 -11.06959 -10.48720 -10.30316 -10.26526 -10.18479 -10.15882 -9.55269 -9.05595 -8.54688 -8.19289 -8.15258 -8.01705 -6.47212 -3.88115 0.98233 2.09229 2.23790 2.92873 3.15829 3.19515 3.21986 3.26261 3.28927 3.84285 3.88893 4.11589 4.35340 4.64501 4.69322 4.75593 4.87194 4.95623 4.97778 5.08767 5.15370 5.18142 5.18488 5.25844 5.39692 5.41326 5.48977 5.63983 5.67885 5.71944 5.87847 5.99984 6.14880 6.19595 6.33455 6.45677 6.94614 7.08667 7.41655 7.49863 7.56620 7.61463 8.00497 8.14927 8.55526 9.12556 9.48269 9.99902 10.70371 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008084 B = 0.003231 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.691499 B = 8663.721887 C =11588.784785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.264 6.264 3 C 0.217 3.783 4 C -0.246 4.246 5 C -0.086 4.086 6 C -0.098 4.098 7 C 0.605 3.395 8 O -0.533 6.533 9 N -0.702 5.702 10 C 0.137 3.863 11 C 0.074 3.926 12 H 0.095 0.905 13 C 0.047 3.953 14 O -0.565 6.565 15 N -0.660 5.660 16 C 0.048 3.952 17 C 0.440 3.560 18 O -0.580 6.580 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 O -0.185 6.185 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.412 0.588 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.381 0.619 40 H 0.364 0.636 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.742 1.381 10.335 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.120 3.880 4 C -0.266 4.266 5 C -0.107 4.107 6 C -0.148 4.148 7 C 0.392 3.608 8 O -0.413 6.413 9 N -0.352 5.352 10 C 0.013 3.987 11 C -0.037 4.037 12 H 0.113 0.887 13 C -0.033 4.033 14 O -0.370 6.370 15 N -0.294 5.294 16 C -0.085 4.085 17 C 0.225 3.775 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O -0.084 6.084 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.249 0.751 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.228 0.772 40 H 0.185 0.815 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.781 0.382 9.850 17.766 hybrid contribution -2.154 0.735 -0.202 2.285 sum 12.627 1.117 9.648 15.930 Atomic orbital electron populations 1.23237 0.76003 1.05164 1.03298 1.86388 1.23590 1.18783 1.89011 1.20839 0.89544 0.78341 0.99251 1.20742 0.92040 0.96885 1.16884 1.21943 0.97741 0.92504 0.98463 1.21957 0.86985 0.87467 1.18404 1.16307 0.83549 0.83849 0.77084 1.90877 1.44468 1.53743 1.52204 1.45701 1.07225 1.09035 1.73206 1.21274 0.94239 0.80426 1.02794 1.21994 0.95095 0.90375 0.96242 0.88732 1.22831 0.96431 0.95673 0.88390 1.86495 1.75430 1.29028 1.46073 1.60132 1.14835 1.49423 1.04997 1.21754 0.88792 0.99127 0.98824 1.19772 0.83147 0.85489 0.89091 1.90549 1.59986 1.60146 1.35706 1.41847 1.09065 1.50711 1.18370 1.19653 0.94603 1.31877 0.96839 0.87989 1.25252 0.96181 0.98089 0.98325 1.69600 1.08523 1.47221 1.29019 0.85924 0.77634 0.79795 0.80925 1.19879 1.20957 1.19887 1.84010 1.37618 1.14231 1.72583 0.91675 0.91121 0.87065 0.82014 0.81631 0.75143 0.89949 0.91250 0.92954 0.93005 0.77231 0.81452 0.93881 0.89687 0.77523 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.74 101.05 1.09 1.24 16 2 O -0.26 -2.99 10.55 -41.04 -0.43 -3.42 16 3 C 0.22 2.71 7.86 29.96 0.24 2.95 16 4 C -0.25 -2.76 10.89 -39.73 -0.43 -3.19 16 5 C -0.09 -1.04 10.66 -39.10 -0.42 -1.45 16 6 C -0.10 -1.35 7.15 -36.57 -0.26 -1.62 16 7 C 0.61 9.03 7.77 -13.10 -0.10 8.93 16 8 O -0.53 -9.11 16.87 5.13 0.09 -9.02 16 9 N -0.70 -9.48 5.38 -61.79 -0.33 -9.81 16 10 C 0.14 1.69 5.26 -4.04 -0.02 1.67 16 11 C 0.07 0.83 2.57 -67.71 -0.17 0.66 16 12 H 0.09 0.91 7.80 -51.93 -0.40 0.50 16 13 C 0.05 0.44 6.72 37.16 0.25 0.69 16 14 O -0.56 -5.89 12.05 -35.23 -0.42 -6.31 16 15 N -0.66 -9.94 5.31 -107.99 -0.57 -10.52 16 16 C 0.05 0.77 5.96 -4.98 -0.03 0.74 16 17 C 0.44 9.94 7.82 -10.98 -0.09 9.86 16 18 O -0.58 -15.40 15.78 5.54 0.09 -15.31 16 19 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 20 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 21 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16 24 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 O -0.18 -2.51 9.88 -19.28 -0.19 -2.70 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.41 5.57 7.89 -40.82 -0.32 5.25 16 35 H 0.08 1.19 7.39 -51.93 -0.38 0.80 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.38 2.31 9.12 45.56 0.42 2.73 16 40 H 0.36 6.25 7.64 -39.29 -0.30 5.95 16 41 H 0.04 0.62 7.36 -51.93 -0.38 0.24 16 42 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 43 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -34.01 386.41 -5.48 -39.49 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -4.97 Total: 20.49 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -0.19 Total: 12.66 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.24 Total: -57.34 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.87 Total: -36.76 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.01 -5.48 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676593330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.720 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds