Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35370 * 116.99849 * 2 1 4 4 C 1.36092 * 125.57808 * 179.97438 * 3 2 1 5 5 C 1.39907 * 107.17542 * 179.97438 * 4 3 2 6 6 C 1.37833 * 106.68016 * 0.02562 * 5 4 3 7 7 C 1.46124 * 126.03290 * 179.97438 * 6 5 4 8 8 O 1.21761 * 120.00228 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99936 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00115 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47370 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46500 * 65.00131 * 11 10 9 13 13 C 1.52996 * 109.47314 * 184.99828 * 11 10 9 14 14 O 1.42900 * 109.46993 * 55.00541 * 13 11 10 15 15 N 1.46901 * 109.47236 * 305.00500 * 11 10 9 16 16 C 1.46895 * 110.99816 * 154.99590 * 15 11 10 17 17 C 1.50706 * 109.47182 * 179.97438 * 16 15 11 18 18 O 1.21297 * 119.99667 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.72734 * 17 16 15 20 20 C 1.37095 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99401 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00554 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46783 * 60.00161 * 24 22 20 26 26 H 1.48496 * 109.47291 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46865 * 300.00343 * 24 22 20 28 28 O 1.34011 * 125.57599 * 0.26531 * 3 2 1 29 29 H 1.08996 * 109.47407 * 299.99519 * 1 2 3 30 30 H 1.08993 * 109.47073 * 60.00272 * 1 2 3 31 31 H 1.09009 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.07997 * 126.41366 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.66492 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00135 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46798 * 59.99948 * 10 9 7 36 36 H 1.08994 * 109.47247 * 299.99955 * 10 9 7 37 37 H 1.09003 * 109.47323 * 175.00279 * 13 11 10 38 38 H 1.09002 * 109.47449 * 295.00609 * 13 11 10 39 39 H 0.96697 * 114.00205 * 179.97438 * 14 13 11 40 40 H 1.00902 * 110.99849 * 278.94969 * 15 11 10 41 41 H 1.09001 * 109.47613 * 60.00104 * 16 15 11 42 42 H 1.08998 * 109.47678 * 300.00000 * 16 15 11 43 43 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 44 44 H 0.97004 * 120.00112 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2062 0.0000 4 6 3.3892 1.4092 0.0005 5 6 3.5983 2.7926 -0.0003 6 6 2.3520 3.3811 -0.0007 7 6 2.0792 4.8166 -0.0010 8 8 3.0015 5.6116 -0.0014 9 7 0.8068 5.2608 -0.0008 10 6 0.5333 6.7001 -0.0017 11 6 -0.9791 6.9319 -0.0019 12 1 -1.4040 6.5582 0.9297 13 6 -1.2655 8.4295 -0.1285 14 8 -0.6102 8.9432 -1.2898 15 7 -1.5834 6.2201 -1.1360 16 6 -2.9942 5.9086 -0.8705 17 6 -3.5792 5.1808 -2.0534 18 8 -2.8886 4.9445 -3.0222 19 7 -4.8680 4.7873 -2.0325 20 6 -5.4000 4.1248 -3.1084 21 1 -4.7864 3.9186 -3.9730 22 6 -6.7286 3.7186 -3.0867 23 7 -7.4751 3.9690 -2.0346 24 14 -7.4537 2.8165 -4.5530 25 1 -6.6979 1.5592 -4.7838 26 1 -8.8781 2.4958 -4.2820 27 1 -7.3616 3.6779 -5.7590 28 8 1.4263 2.3957 0.0050 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 4.1528 0.6455 0.0013 33 1 4.5513 3.3007 -0.0006 34 1 0.0720 4.6276 -0.0009 35 1 0.9700 7.1523 -0.8922 36 1 0.9706 7.1535 0.8878 37 1 -2.3403 8.5876 -0.2180 38 1 -0.8946 8.9465 0.7565 39 1 -0.7488 9.8894 -1.4334 40 1 -1.4843 6.7493 -1.9893 41 1 -3.5458 6.8340 -0.7048 42 1 -3.0667 5.2787 0.0161 43 1 -5.4191 4.9721 -1.2559 44 1 -8.4027 3.6858 -2.0195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676593330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -168.157048 kcal Electronic energy + Delta-G solvation = -29593.217863 eV Core-core repulsion = 25125.871667 eV Total energy + Delta-G solvation = -4467.346195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.80864 -40.73106 -40.16881 -39.50773 -38.82292 -36.48530 -35.97053 -35.06288 -34.21715 -33.26381 -31.62905 -30.44652 -28.37024 -27.79698 -26.63197 -25.64873 -23.65663 -23.01803 -21.92066 -21.31357 -21.12582 -19.98247 -19.89447 -18.82878 -18.41913 -18.14487 -17.85876 -17.14333 -16.79390 -16.55309 -16.43196 -16.32655 -15.99952 -15.81915 -15.62995 -15.24412 -15.15658 -14.82059 -14.50107 -14.29237 -14.00863 -13.96428 -13.94797 -13.55089 -13.31256 -13.06232 -13.01831 -12.90418 -12.61837 -12.54785 -12.43522 -12.28749 -12.13407 -11.50761 -11.44242 -11.10096 -10.92646 -10.35069 -10.15822 -10.01221 -9.35192 -9.14986 -8.47052 -5.95272 -0.04377 1.14536 1.30518 1.38777 1.41323 1.51485 1.99657 2.06343 2.12466 2.27624 2.30929 2.84524 3.20548 3.34100 3.65396 3.74724 3.79331 3.81994 4.06787 4.18737 4.22153 4.29271 4.32325 4.34764 4.43532 4.53819 4.55998 4.60231 4.66088 4.68678 4.77617 4.84038 4.98563 5.25753 5.30430 5.40600 5.46761 5.88257 6.03502 6.09344 6.32895 6.46447 6.60708 6.90968 7.03964 7.13198 7.57045 8.13198 8.69920 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008084 B = 0.003231 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.691499 B = 8663.721887 C =11588.784785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.266 6.266 3 C 0.207 3.793 4 C -0.240 4.240 5 C -0.077 4.077 6 C -0.127 4.127 7 C 0.602 3.398 8 O -0.562 6.562 9 N -0.698 5.698 10 C 0.140 3.860 11 C 0.077 3.923 12 H 0.119 0.881 13 C 0.050 3.950 14 O -0.589 6.589 15 N -0.674 5.674 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.989 3.011 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.274 1.274 28 O -0.195 6.195 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.190 0.810 33 H 0.182 0.818 34 H 0.412 0.588 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.398 0.602 40 H 0.350 0.650 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.541 1.162 11.616 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.180 6.180 3 C 0.110 3.890 4 C -0.260 4.260 5 C -0.098 4.098 6 C -0.177 4.177 7 C 0.390 3.610 8 O -0.445 6.445 9 N -0.347 5.347 10 C 0.016 3.984 11 C -0.033 4.033 12 H 0.137 0.863 13 C -0.030 4.030 14 O -0.397 6.397 15 N -0.306 5.306 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.511 6.511 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.813 3.187 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 O -0.096 6.096 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.207 0.793 33 H 0.199 0.801 34 H 0.248 0.752 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.248 0.752 40 H 0.169 0.831 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.553 0.186 11.171 18.347 hybrid contribution -2.044 0.780 -0.594 2.267 sum 12.509 0.966 10.577 16.410 Atomic orbital electron populations 1.23428 0.74989 1.06904 1.02788 1.86395 1.24619 1.18145 1.88819 1.21234 0.90225 0.78364 0.99196 1.21108 0.92158 0.97062 1.15642 1.22263 0.97784 0.92987 0.96737 1.21914 0.87781 0.87262 1.20743 1.16471 0.83584 0.84257 0.76677 1.90846 1.45163 1.54606 1.53871 1.45743 1.06830 1.09601 1.72485 1.21310 0.95116 0.79644 1.02357 1.22106 0.93844 0.91751 0.95606 0.86305 1.22817 0.96704 0.94287 0.89167 1.86461 1.75762 1.30778 1.46739 1.60081 1.14216 1.50586 1.05755 1.21618 0.89333 0.99707 0.96126 1.20921 0.82207 0.84212 0.90206 1.90520 1.60890 1.61578 1.38066 1.41894 1.09926 1.51115 1.17972 1.19591 0.95295 1.34039 0.97420 0.90590 1.25961 0.95949 0.98274 1.00783 1.69653 1.08866 1.47373 1.30077 0.85052 0.77395 0.78489 0.77811 1.19760 1.19443 1.19918 1.83971 1.37983 1.14633 1.73005 0.91167 0.92628 0.84262 0.79324 0.80095 0.75166 0.92332 0.89650 0.92513 0.90229 0.75230 0.83061 0.91334 0.87099 0.76919 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 10.74 113.37 1.22 1.44 16 2 O -0.27 -5.76 10.55 -64.40 -0.68 -6.43 16 3 C 0.21 5.01 7.86 67.32 0.53 5.54 16 4 C -0.24 -5.04 10.89 22.17 0.24 -4.80 16 5 C -0.08 -1.80 10.66 22.58 0.24 -1.56 16 6 C -0.13 -3.53 7.15 24.22 0.17 -3.35 16 7 C 0.60 18.16 7.77 86.29 0.67 18.83 16 8 O -0.56 -19.44 16.87 -4.54 -0.08 -19.52 16 9 N -0.70 -18.76 5.38 -467.59 -2.52 -21.28 16 10 C 0.14 3.33 5.26 86.38 0.45 3.78 16 11 C 0.08 1.58 2.57 44.91 0.12 1.70 16 12 H 0.12 1.89 7.80 -2.39 -0.02 1.87 16 13 C 0.05 0.82 6.72 71.98 0.48 1.30 16 14 O -0.59 -11.56 12.05 -148.98 -1.80 -13.36 16 15 N -0.67 -19.70 5.31 -495.57 -2.63 -22.33 16 16 C 0.06 1.97 5.96 85.56 0.51 2.48 16 17 C 0.44 19.88 7.82 87.66 0.69 20.57 16 18 O -0.62 -34.06 15.78 -3.08 -0.05 -34.11 16 19 N -0.57 -28.16 5.29 -306.98 -1.62 -29.78 16 20 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 21 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 22 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 23 N -0.92 -48.18 13.05 21.66 0.28 -47.90 16 24 Si 0.99 42.13 29.55 68.60 2.03 44.16 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 O -0.20 -5.32 9.88 13.44 0.13 -5.19 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.41 11.07 7.89 -92.71 -0.73 10.34 16 35 H 0.06 1.70 7.39 -2.38 -0.02 1.69 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 0.90 7.35 -2.39 -0.02 0.88 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.40 4.29 9.12 -74.06 -0.68 3.61 16 40 H 0.35 12.03 7.64 -89.69 -0.69 11.34 16 41 H 0.07 1.80 7.36 -2.39 -0.02 1.78 16 42 H 0.11 2.87 8.06 -2.39 -0.02 2.85 16 43 H 0.40 18.38 7.90 -92.71 -0.73 17.64 16 44 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -75.16 386.41 -2.06 -77.22 By element: Atomic # 1 Polarization: 52.10 SS G_CDS: -1.73 Total: 50.37 kcal Atomic # 6 Polarization: 21.55 SS G_CDS: 6.60 Total: 28.16 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -6.49 Total: -121.29 kcal Atomic # 8 Polarization: -76.14 SS G_CDS: -2.47 Total: -78.61 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -75.16 -2.06 -77.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676593330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.935 kcal (2) G-P(sol) polarization free energy of solvation -75.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds