Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48504 * 109.46578 * 269.99837 * 3 2 1 5 5 H 1.48494 * 109.47428 * 29.99546 * 3 2 1 6 6 H 1.48497 * 109.47268 * 150.00043 * 3 2 1 7 7 C 1.37874 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00646 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99803 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.34663 * 124.64546 * 265.30587 * 10 9 7 12 12 C 1.37867 * 109.62045 * 180.12282 * 11 10 9 13 13 C 1.41731 * 126.90781 * 179.88947 * 12 11 10 14 14 O 1.21405 * 119.99323 * 179.68916 * 13 12 11 15 15 C 1.50697 * 120.00410 * 359.68264 * 13 12 11 16 16 N 1.46900 * 109.47050 * 179.97438 * 15 13 12 17 17 C 1.47185 * 110.99887 * 188.93643 * 16 15 13 18 18 C 1.52992 * 108.71825 * 167.62440 * 17 16 15 19 19 N 1.46018 * 110.03907 * 50.30733 * 18 17 16 20 20 C 1.33714 * 122.92358 * 341.83961 * 19 18 17 21 21 O 1.21278 * 118.61847 * 181.68683 * 20 19 18 22 22 C 1.46909 * 110.99602 * 66.04914 * 16 15 13 23 23 C 1.47608 * 106.17560 * 359.62606 * 12 11 10 24 24 C 1.39186 * 133.99643 * 180.24682 * 23 12 11 25 25 C 1.37804 * 119.67569 * 179.97438 * 24 23 12 26 26 C 1.38719 * 120.26816 * 359.97407 * 25 24 23 27 27 C 1.37775 * 120.64021 * 0.02755 * 26 25 24 28 28 C 1.38021 * 124.64204 * 85.00276 * 10 9 7 29 29 H 0.97003 * 120.00516 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47302 * 60.00424 * 9 7 2 31 31 H 1.08999 * 109.47382 * 300.00362 * 9 7 2 32 32 H 1.08003 * 125.19206 * 359.97438 * 11 10 9 33 33 H 1.09002 * 109.46684 * 60.00093 * 15 13 12 34 34 H 1.08997 * 109.46938 * 300.00618 * 15 13 12 35 35 H 1.08996 * 109.59827 * 287.41046 * 17 16 15 36 36 H 1.09000 * 109.59716 * 47.71600 * 17 16 15 37 37 H 1.09003 * 109.37746 * 290.13187 * 18 17 16 38 38 H 1.09003 * 109.37887 * 170.47797 * 18 17 16 39 39 H 0.96997 * 118.53285 * 162.12828 * 19 18 17 40 40 H 1.09000 * 109.38197 * 53.50775 * 22 16 15 41 41 H 1.08994 * 109.30127 * 293.76880 * 22 16 15 42 42 H 1.08000 * 120.16320 * 359.97438 * 24 23 12 43 43 H 1.08004 * 119.86252 * 180.02562 * 25 24 23 44 44 H 1.08007 * 119.68163 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.03125 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9997 -2.5753 0.0010 11 6 4.3399 -3.2671 1.1051 12 6 4.7589 -4.5313 0.7486 13 6 5.2008 -5.5586 1.6192 14 8 5.5381 -6.6338 1.1673 15 6 5.2522 -5.3164 3.1057 16 7 5.7397 -6.5257 3.7823 17 6 5.6039 -6.4040 5.2428 18 6 5.8275 -7.7800 5.8731 19 7 7.0619 -8.3696 5.3626 20 6 7.6603 -7.9478 4.2437 21 8 8.6670 -8.5144 3.8743 22 6 7.1376 -6.8017 3.4247 23 6 4.6486 -4.6016 -0.7217 24 6 4.9108 -5.5912 -1.6647 25 6 4.6966 -5.3339 -3.0014 26 6 4.2215 -4.0955 -3.4076 27 6 3.9579 -3.1072 -2.4845 28 6 4.1684 -3.3478 -1.1303 29 1 -0.4851 0.8400 -0.0004 30 1 3.8744 -0.6801 0.8912 31 1 3.8751 -0.6804 -0.8888 32 1 4.2941 -2.8886 2.1156 33 1 4.2533 -5.0748 3.4691 34 1 5.9259 -4.4856 3.3153 35 1 6.3474 -5.7029 5.6219 36 1 4.6044 -6.0452 5.4884 37 1 4.9878 -8.4306 5.6284 38 1 5.8977 -7.6749 6.9557 39 1 7.4635 -9.1026 5.8549 40 1 7.7418 -5.9149 3.6162 41 1 7.1951 -7.0571 2.3667 42 1 5.2803 -6.5561 -1.3503 43 1 4.8987 -6.0997 -3.7356 44 1 4.0566 -3.9041 -4.4577 45 1 3.5887 -2.1466 -2.8118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072863628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = 4.254823 kcal Electronic energy + Delta-G solvation = -28936.924394 eV Core-core repulsion = 24920.196552 eV Total energy + Delta-G solvation = -4016.727841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16284 -40.48382 -38.75381 -37.03547 -36.76006 -34.65885 -33.62841 -32.12028 -30.05674 -29.97027 -29.86217 -28.35527 -27.48793 -25.10943 -23.64698 -22.99283 -22.56035 -21.45260 -20.38764 -19.49512 -18.66186 -17.58542 -17.35256 -17.11478 -16.47006 -16.32615 -15.87061 -15.29590 -15.15310 -15.10432 -14.85148 -14.71031 -14.25988 -14.13999 -13.76479 -13.60209 -13.40782 -13.27204 -13.10483 -12.74196 -12.69101 -12.22760 -12.17448 -12.12048 -11.86280 -11.69601 -11.54253 -11.27520 -11.08341 -10.89822 -10.50083 -10.28531 -10.09881 -9.85021 -9.36725 -9.28307 -9.12164 -8.98209 -8.64525 -7.84893 -7.23084 -6.45948 -4.52600 1.23975 1.88628 2.25524 2.46562 2.99164 3.03514 3.04578 3.08544 3.33824 3.42157 3.56100 4.02786 4.32650 4.35266 4.38626 4.47007 4.81380 4.83297 4.87434 5.00547 5.08488 5.12195 5.20972 5.26651 5.34204 5.37908 5.45175 5.49372 5.59603 5.64043 5.88308 5.97464 6.01817 6.15918 6.20194 6.23883 6.43414 6.45432 6.58401 6.70582 6.83647 6.97907 7.03905 7.05694 7.08607 7.20951 7.59573 7.62833 8.01979 8.06339 8.12066 8.57978 9.07939 10.65924 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.002951 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.130402 B = 9485.655766 C =11203.011660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.083 3.917 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.199 3.801 10 N -0.421 5.421 11 C 0.155 3.845 12 C -0.308 4.308 13 C 0.430 3.570 14 O -0.468 6.468 15 C 0.007 3.993 16 N -0.517 5.517 17 C 0.030 3.970 18 C 0.117 3.883 19 N -0.722 5.722 20 C 0.530 3.470 21 O -0.555 6.555 22 C 0.032 3.968 23 C -0.056 4.056 24 C -0.081 4.081 25 C -0.141 4.141 26 C -0.119 4.119 27 C -0.102 4.102 28 C 0.086 3.914 29 H 0.271 0.729 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.175 0.825 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.399 0.601 40 H 0.068 0.932 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.987 -7.561 8.886 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.123 4.123 3 Si 0.699 3.301 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.080 3.920 10 N -0.094 5.094 11 C 0.013 3.987 12 C -0.317 4.317 13 C 0.312 3.688 14 O -0.346 6.346 15 C -0.121 4.121 16 N -0.243 5.243 17 C -0.098 4.098 18 C -0.008 4.008 19 N -0.374 5.374 20 C 0.317 3.683 21 O -0.432 6.432 22 C -0.098 4.098 23 C -0.059 4.059 24 C -0.100 4.100 25 C -0.160 4.160 26 C -0.138 4.138 27 C -0.122 4.122 28 C -0.019 4.019 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.192 0.808 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.234 0.766 40 H 0.086 0.914 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.987 -8.134 8.131 15.232 hybrid contribution 0.502 1.702 0.645 1.889 sum 10.489 -6.432 8.776 15.113 Atomic orbital electron populations 1.69861 1.06215 1.27686 1.47774 1.24821 0.94815 0.98893 0.93766 0.86909 0.80256 0.83739 0.79228 1.19548 1.20379 1.18923 1.21135 0.87698 0.95738 1.54519 0.89831 1.20284 0.97285 0.75319 0.99126 1.44173 1.47494 1.13593 1.04152 1.22504 0.93096 0.90875 0.92184 1.19552 1.22459 0.96560 0.93152 1.19719 0.74397 0.86136 0.88578 1.90475 1.39407 1.25799 1.78913 1.22615 1.02769 0.91318 0.95438 1.62297 1.19200 1.36489 1.06269 1.22570 1.03151 0.96183 0.87933 1.21481 0.86862 0.94557 0.97882 1.45547 1.27017 1.38375 1.26511 1.20155 0.83158 0.84689 0.80334 1.90762 1.26054 1.56945 1.69455 1.22523 0.88186 0.95996 1.03138 1.18806 1.01953 0.93260 0.91920 1.20507 0.99536 0.98325 0.91621 1.20884 1.02555 0.97110 0.95425 1.20722 1.01175 0.93286 0.98646 1.20185 1.02046 1.00437 0.89484 1.18294 1.03724 0.91106 0.88754 0.91868 0.93206 0.93887 0.80829 0.86936 0.91319 0.93545 0.88177 0.90612 0.90138 0.76581 0.91376 0.84882 0.85649 0.86426 0.86145 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.37 13.96 55.43 0.77 -23.59 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 18.39 27.47 -169.99 -4.67 13.73 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.16 6.54 56.52 0.37 -4.79 16 7 C -0.55 -13.81 9.94 -34.44 -0.34 -14.15 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 9 C 0.20 4.05 4.75 -5.19 -0.02 4.02 16 10 N -0.42 -7.94 2.70 -115.28 -0.31 -8.26 16 11 C 0.15 2.44 10.71 -16.45 -0.18 2.26 16 12 C -0.31 -5.09 6.11 -104.88 -0.64 -5.73 16 13 C 0.43 6.43 6.71 -32.98 -0.22 6.21 16 14 O -0.47 -8.26 13.94 5.45 0.08 -8.19 16 15 C 0.01 0.07 4.72 -4.98 -0.02 0.05 16 16 N -0.52 -5.57 4.47 -237.55 -1.06 -6.63 16 17 C 0.03 0.21 5.60 -3.67 -0.02 0.19 16 18 C 0.12 0.75 7.39 -4.31 -0.03 0.71 16 19 N -0.72 -6.63 5.52 -61.05 -0.34 -6.96 16 20 C 0.53 6.84 7.81 -11.68 -0.09 6.75 16 21 O -0.55 -9.29 17.82 5.56 0.10 -9.20 16 22 C 0.03 0.39 5.15 -5.19 -0.03 0.36 16 23 C -0.06 -1.04 6.24 -104.93 -0.65 -1.69 16 24 C -0.08 -1.40 9.80 -39.39 -0.39 -1.78 16 25 C -0.14 -2.16 10.03 -39.56 -0.40 -2.55 16 26 C -0.12 -1.85 10.01 -39.57 -0.40 -2.24 16 27 C -0.10 -1.82 9.96 -39.41 -0.39 -2.22 16 28 C 0.09 1.64 6.78 -83.95 -0.57 1.08 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 30 H 0.05 0.94 7.16 -51.93 -0.37 0.57 16 31 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 32 H 0.17 2.02 7.91 -52.48 -0.42 1.60 16 33 H 0.11 1.00 7.93 -51.93 -0.41 0.59 16 34 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 35 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.10 0.54 7.91 -51.93 -0.41 0.13 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.40 3.10 8.84 -40.82 -0.36 2.74 16 40 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.13 1.98 6.00 -51.93 -0.31 1.66 16 42 H 0.13 2.11 7.38 -52.49 -0.39 1.72 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -33.16 375.51 -10.29 -43.45 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.02 Total: 6.73 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -4.49 Total: -6.74 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.94 Total: -45.44 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.18 Total: -17.38 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.67 Total: 13.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.16 -10.29 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072863628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.704 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds