Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48504 * 109.46578 * 269.99837 * 3 2 1 5 5 H 1.48494 * 109.47428 * 29.99546 * 3 2 1 6 6 H 1.48497 * 109.47268 * 150.00043 * 3 2 1 7 7 C 1.37874 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00646 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99803 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.34663 * 124.64546 * 265.30587 * 10 9 7 12 12 C 1.37867 * 109.62045 * 180.12282 * 11 10 9 13 13 C 1.41731 * 126.90781 * 179.88947 * 12 11 10 14 14 O 1.21405 * 119.99323 * 179.68916 * 13 12 11 15 15 C 1.50697 * 120.00410 * 359.68264 * 13 12 11 16 16 N 1.46900 * 109.47050 * 179.97438 * 15 13 12 17 17 C 1.47185 * 110.99887 * 188.93643 * 16 15 13 18 18 C 1.52992 * 108.71825 * 167.62440 * 17 16 15 19 19 N 1.46018 * 110.03907 * 50.30733 * 18 17 16 20 20 C 1.33714 * 122.92358 * 341.83961 * 19 18 17 21 21 O 1.21278 * 118.61847 * 181.68683 * 20 19 18 22 22 C 1.46909 * 110.99602 * 66.04914 * 16 15 13 23 23 C 1.47608 * 106.17560 * 359.62606 * 12 11 10 24 24 C 1.39186 * 133.99643 * 180.24682 * 23 12 11 25 25 C 1.37804 * 119.67569 * 179.97438 * 24 23 12 26 26 C 1.38719 * 120.26816 * 359.97407 * 25 24 23 27 27 C 1.37775 * 120.64021 * 0.02755 * 26 25 24 28 28 C 1.38021 * 124.64204 * 85.00276 * 10 9 7 29 29 H 0.97003 * 120.00516 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47302 * 60.00424 * 9 7 2 31 31 H 1.08999 * 109.47382 * 300.00362 * 9 7 2 32 32 H 1.08003 * 125.19206 * 359.97438 * 11 10 9 33 33 H 1.09002 * 109.46684 * 60.00093 * 15 13 12 34 34 H 1.08997 * 109.46938 * 300.00618 * 15 13 12 35 35 H 1.08996 * 109.59827 * 287.41046 * 17 16 15 36 36 H 1.09000 * 109.59716 * 47.71600 * 17 16 15 37 37 H 1.09003 * 109.37746 * 290.13187 * 18 17 16 38 38 H 1.09003 * 109.37887 * 170.47797 * 18 17 16 39 39 H 0.96997 * 118.53285 * 162.12828 * 19 18 17 40 40 H 1.09000 * 109.38197 * 53.50775 * 22 16 15 41 41 H 1.08994 * 109.30127 * 293.76880 * 22 16 15 42 42 H 1.08000 * 120.16320 * 359.97438 * 24 23 12 43 43 H 1.08004 * 119.86252 * 180.02562 * 25 24 23 44 44 H 1.08007 * 119.68163 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.03125 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9997 -2.5753 0.0010 11 6 4.3399 -3.2671 1.1051 12 6 4.7589 -4.5313 0.7486 13 6 5.2008 -5.5586 1.6192 14 8 5.5381 -6.6338 1.1673 15 6 5.2522 -5.3164 3.1057 16 7 5.7397 -6.5257 3.7823 17 6 5.6039 -6.4040 5.2428 18 6 5.8275 -7.7800 5.8731 19 7 7.0619 -8.3696 5.3626 20 6 7.6603 -7.9478 4.2437 21 8 8.6670 -8.5144 3.8743 22 6 7.1376 -6.8017 3.4247 23 6 4.6486 -4.6016 -0.7217 24 6 4.9108 -5.5912 -1.6647 25 6 4.6966 -5.3339 -3.0014 26 6 4.2215 -4.0955 -3.4076 27 6 3.9579 -3.1072 -2.4845 28 6 4.1684 -3.3478 -1.1303 29 1 -0.4851 0.8400 -0.0004 30 1 3.8744 -0.6801 0.8912 31 1 3.8751 -0.6804 -0.8888 32 1 4.2941 -2.8886 2.1156 33 1 4.2533 -5.0748 3.4691 34 1 5.9259 -4.4856 3.3153 35 1 6.3474 -5.7029 5.6219 36 1 4.6044 -6.0452 5.4884 37 1 4.9878 -8.4306 5.6284 38 1 5.8977 -7.6749 6.9557 39 1 7.4635 -9.1026 5.8549 40 1 7.7418 -5.9149 3.6162 41 1 7.1951 -7.0571 2.3667 42 1 5.2803 -6.5561 -1.3503 43 1 4.8987 -6.0997 -3.7356 44 1 4.0566 -3.9041 -4.4577 45 1 3.5887 -2.1466 -2.8118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072863628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = -19.080195 kcal Electronic energy + Delta-G solvation = -28937.936276 eV Core-core repulsion = 24920.196552 eV Total energy + Delta-G solvation = -4017.739724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45331 -41.38855 -39.88829 -38.08672 -37.96388 -35.48117 -35.35893 -33.67689 -31.41171 -31.03539 -30.73219 -29.70333 -28.74540 -26.09156 -24.93213 -24.13465 -23.72130 -22.66057 -21.79110 -20.25495 -19.84992 -19.23574 -18.42701 -18.17016 -17.62460 -17.45140 -16.85151 -16.57622 -16.37033 -16.23208 -15.93397 -15.77604 -15.42881 -15.31088 -15.00219 -14.86441 -14.60254 -14.50832 -14.41061 -14.01736 -13.77564 -13.53979 -13.33434 -13.17084 -12.91208 -12.67620 -12.58014 -12.51563 -12.41818 -12.34068 -11.86425 -11.84129 -11.68690 -11.11797 -10.90760 -10.49212 -10.42204 -10.09861 -9.42915 -9.17211 -8.57236 -8.39831 -6.52326 -0.01193 0.58973 0.95821 1.36689 1.37933 1.46883 1.49491 1.99632 2.26305 2.28889 2.35134 2.63151 2.93337 3.02991 3.36665 3.61597 3.77466 3.83088 3.89995 4.09346 4.11759 4.23186 4.31546 4.32802 4.41007 4.48758 4.57509 4.57633 4.63550 4.67278 4.68212 4.72429 4.81123 4.87151 5.00234 5.03949 5.21025 5.22147 5.54701 5.67241 5.68617 5.72620 5.80583 5.88616 5.97725 6.00254 6.23228 6.29060 6.38789 6.55370 6.98452 7.13163 7.13729 8.76054 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.002951 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.130402 B = 9485.655766 C =11203.011660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.024 3.976 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.230 1.230 7 C -0.553 4.553 8 H 0.029 0.971 9 C 0.208 3.792 10 N -0.438 5.438 11 C 0.162 3.838 12 C -0.320 4.320 13 C 0.428 3.572 14 O -0.503 6.503 15 C 0.015 3.985 16 N -0.534 5.534 17 C 0.027 3.973 18 C 0.112 3.888 19 N -0.709 5.709 20 C 0.524 3.476 21 O -0.606 6.606 22 C 0.037 3.963 23 C -0.083 4.083 24 C -0.098 4.098 25 C -0.135 4.135 26 C -0.113 4.113 27 C -0.126 4.126 28 C 0.058 3.942 29 H 0.272 0.728 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.219 0.781 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.060 -6.276 10.833 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.152 1.152 7 C -0.591 4.591 8 H 0.048 0.952 9 C 0.088 3.912 10 N -0.113 5.113 11 C 0.023 3.977 12 C -0.328 4.328 13 C 0.311 3.689 14 O -0.384 6.384 15 C -0.113 4.113 16 N -0.260 5.260 17 C -0.100 4.100 18 C -0.012 4.012 19 N -0.360 5.360 20 C 0.311 3.689 21 O -0.488 6.488 22 C -0.093 4.093 23 C -0.087 4.087 24 C -0.116 4.116 25 C -0.154 4.154 26 C -0.132 4.132 27 C -0.146 4.146 28 C -0.046 4.046 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.235 0.765 33 H 0.155 0.845 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.242 0.758 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.140 0.860 43 H 0.168 0.832 44 H 0.170 0.830 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.050 -6.873 10.129 16.491 hybrid contribution 0.079 1.134 0.010 1.137 sum 11.129 -5.740 10.139 16.112 Atomic orbital electron populations 1.70031 1.08542 1.28864 1.50000 1.25792 0.95519 1.03201 0.93095 0.85751 0.80025 0.77910 0.79560 1.19322 1.20662 1.15235 1.21262 0.90362 0.93647 1.53807 0.95228 1.20080 0.93894 0.76738 1.00478 1.44144 1.48837 1.13370 1.04979 1.23179 0.91237 0.90172 0.93133 1.19911 1.22647 0.97574 0.92699 1.20294 0.72907 0.84940 0.90766 1.90472 1.40784 1.27052 1.80042 1.22581 1.04788 0.92117 0.91786 1.62226 1.18005 1.37045 1.08727 1.22764 1.05059 0.96876 0.85288 1.21796 0.85302 0.94163 0.99905 1.45565 1.27346 1.37961 1.25150 1.20335 0.82732 0.84708 0.81101 1.90730 1.28395 1.58676 1.71012 1.22297 0.89623 0.96263 1.01124 1.19247 1.02489 0.93414 0.93551 1.20679 1.00257 0.98124 0.92585 1.21257 1.01037 0.97757 0.95315 1.21094 0.99662 0.92617 0.99832 1.20410 1.03244 1.01102 0.89835 1.18626 1.04733 0.91766 0.89465 0.91834 0.90325 0.93314 0.76500 0.84501 0.88448 0.92159 0.85715 0.90485 0.86339 0.75796 0.89988 0.88260 0.86038 0.83243 0.83017 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.33 13.96 21.45 0.30 -53.03 16 2 C 0.02 1.24 5.47 84.65 0.46 1.70 16 3 Si 0.95 36.85 27.47 68.60 1.88 38.73 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.23 -7.61 6.54 99.48 0.65 -6.96 16 7 C -0.55 -27.97 9.94 25.60 0.25 -27.72 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.21 8.16 4.75 85.63 0.41 8.57 16 10 N -0.44 -16.30 2.70 -518.63 -1.40 -17.71 16 11 C 0.16 4.84 10.71 84.17 0.90 5.74 16 12 C -0.32 -10.43 6.11 -20.03 -0.12 -10.55 16 13 C 0.43 12.51 6.71 26.55 0.18 12.69 16 14 O -0.50 -18.24 13.94 -3.42 -0.05 -18.28 16 15 C 0.01 0.27 4.72 85.56 0.40 0.68 16 16 N -0.53 -10.31 4.47 -905.47 -4.05 -14.36 16 17 C 0.03 0.28 5.60 86.25 0.48 0.77 16 18 C 0.11 1.05 7.39 86.47 0.64 1.68 16 19 N -0.71 -11.81 5.52 -466.06 -2.57 -14.38 16 20 C 0.52 13.39 7.81 87.68 0.69 14.07 16 21 O -0.61 -20.96 17.82 -3.02 -0.05 -21.01 16 22 C 0.04 0.89 5.15 85.41 0.44 1.33 16 23 C -0.08 -3.15 6.24 -20.06 -0.13 -3.28 16 24 C -0.10 -3.43 9.80 22.39 0.22 -3.21 16 25 C -0.14 -4.04 10.03 22.28 0.22 -3.82 16 26 C -0.11 -3.43 10.01 22.28 0.22 -3.21 16 27 C -0.13 -4.58 9.96 22.38 0.22 -4.36 16 28 C 0.06 2.25 6.78 38.90 0.26 2.52 16 29 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.08 2.66 7.16 -2.39 -0.02 2.64 16 31 H 0.05 1.87 7.57 -2.39 -0.02 1.85 16 32 H 0.22 4.21 7.91 -2.91 -0.02 4.18 16 33 H 0.14 1.88 7.93 -2.39 -0.02 1.86 16 34 H 0.10 1.27 8.05 -2.39 -0.02 1.25 16 35 H 0.06 0.51 8.08 -2.39 -0.02 0.49 16 36 H 0.12 0.73 7.91 -2.39 -0.02 0.71 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.41 5.71 8.84 -92.71 -0.82 4.89 16 40 H 0.08 1.64 8.05 -2.39 -0.02 1.63 16 41 H 0.10 3.08 6.00 -2.39 -0.01 3.07 16 42 H 0.12 4.26 7.38 -2.91 -0.02 4.24 16 43 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -78.89 375.51 -0.03 -78.92 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.15 Total: 27.53 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.76 Total: -6.41 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -7.72 Total: -99.47 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.10 Total: -39.30 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 1.88 Total: 38.73 kcal Total: -78.89 -0.03 -78.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072863628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.837 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds