Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46505 * 109.45150 * 181.24130 * 12 11 10 14 14 C 1.34778 * 119.99485 * 84.78885 * 13 12 11 15 15 O 1.21608 * 120.00349 * 0.02562 * 14 13 12 16 16 C 1.47464 * 119.99511 * 179.97438 * 14 13 12 17 17 C 1.36236 * 126.36226 * 179.71444 * 16 14 13 18 18 O 1.34274 * 107.12216 * 179.87452 * 17 16 14 19 19 C 1.34481 * 108.16943 * 0.39050 * 18 17 16 20 20 C 1.47873 * 125.49094 * 179.77540 * 19 18 17 21 21 C 1.39547 * 120.14335 * 179.70049 * 20 19 18 22 22 C 1.37973 * 119.85440 * 179.69564 * 21 20 19 23 23 C 1.38343 * 120.14081 * 0.58020 * 22 21 20 24 24 C 1.38345 * 120.29061 * 359.71557 * 23 22 21 25 25 C 1.37966 * 120.14267 * 359.97438 * 24 23 22 26 26 N 1.30890 * 109.01735 * 359.75032 * 19 18 17 27 27 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 28 28 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 29 29 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 31 31 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 32 32 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 33 33 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 34 34 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 35 35 H 0.96997 * 120.00106 * 264.79224 * 13 12 11 36 36 H 1.08000 * 126.44240 * 0.02562 * 17 16 14 37 37 H 1.08005 * 120.07280 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.92183 * 180.31993 * 22 21 20 39 39 H 1.08008 * 119.85611 * 179.74385 * 23 22 21 40 40 H 1.08006 * 119.93012 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.07191 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.49897 * 178.74799 * 27 12 11 43 43 H 1.09004 * 109.50093 * 58.65268 * 27 12 11 44 44 H 1.09001 * 109.58688 * 246.20238 * 28 9 7 45 45 H 1.08996 * 109.58570 * 6.47946 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0399 -5.6476 2.9308 14 6 -0.0050 -6.2695 3.5121 15 8 -1.1367 -6.0452 3.1277 16 6 0.2243 -7.2230 4.6134 17 6 -0.7311 -7.9163 5.2936 18 8 -0.0978 -8.6690 6.2076 19 6 1.2226 -8.4379 6.0991 20 6 2.2748 -9.0652 6.9274 21 6 3.6168 -8.7475 6.7143 22 6 4.5932 -9.3315 7.4947 23 6 4.2451 -10.2394 8.4788 24 6 2.9170 -10.5634 8.6911 25 6 1.9305 -9.9817 7.9219 26 7 1.4262 -7.5687 5.1420 27 6 2.0675 -4.6173 0.9650 28 6 1.8138 -3.6528 -0.1979 29 1 -0.4850 0.8400 -0.0004 30 1 0.0995 -1.3342 1.6688 31 1 -0.6774 -2.6380 0.7364 32 1 1.3429 -2.9691 3.0021 33 1 -0.3879 -3.3839 3.0520 34 1 -0.0281 -5.0406 1.2310 35 1 1.9426 -5.8267 3.2372 36 1 -1.7972 -7.8710 5.1273 37 1 3.8902 -8.0425 5.9430 38 1 5.6317 -9.0825 7.3341 39 1 5.0136 -10.6970 9.0844 40 1 2.6518 -11.2726 9.4613 41 1 0.8940 -10.2351 8.0889 42 1 2.3043 -5.6062 0.5724 43 1 2.9025 -4.2536 1.5638 44 1 1.0401 -4.0605 -0.8485 45 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078117763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = 33.565729 kcal Electronic energy + Delta-G solvation = -28248.553746 eV Core-core repulsion = 24233.096921 eV Total energy + Delta-G solvation = -4015.456825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.65938 -39.63304 -39.41773 -37.31616 -35.18242 -34.39887 -32.79850 -32.05884 -31.44464 -30.09372 -29.64130 -29.22882 -25.50588 -24.36888 -24.00263 -22.93076 -22.22367 -21.81814 -21.29042 -20.27667 -19.42654 -18.45047 -17.27572 -17.10127 -16.80848 -16.43835 -16.09335 -15.70172 -15.26986 -14.78314 -14.62644 -14.34714 -13.98928 -13.90716 -13.79837 -13.61359 -13.48467 -13.37983 -12.96738 -12.61709 -12.37692 -11.96943 -11.66359 -11.61473 -11.47956 -11.13906 -11.09879 -10.92427 -10.72692 -10.39972 -10.21367 -10.16294 -10.12585 -10.01084 -9.74824 -9.53081 -9.46595 -8.78940 -8.63753 -8.40852 -6.66749 -5.76918 -3.20006 0.21664 0.89931 1.09586 2.00418 2.16865 3.12844 3.26132 3.38600 3.41368 3.46336 3.48472 3.53828 4.37080 4.45307 4.50953 4.54824 4.61963 4.70294 4.90782 5.00197 5.12433 5.30752 5.33075 5.39604 5.42273 5.47635 5.53255 5.63840 5.66387 5.84835 5.92384 5.95648 6.00815 6.09668 6.26120 6.34569 6.39079 6.45310 6.61327 6.67300 6.78518 6.89561 6.95227 7.14966 7.39113 7.68298 7.73025 7.81701 8.29905 8.46865 9.22643 9.85918 10.42711 11.31680 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.002100 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.825403 B =13327.040466 C =14180.967658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.703 5.703 14 C 0.597 3.403 15 O -0.535 6.535 16 C -0.060 4.060 17 C 0.013 3.987 18 O -0.192 6.192 19 C 0.234 3.766 20 C -0.019 4.019 21 C -0.069 4.069 22 C -0.121 4.121 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.089 4.089 26 N -0.446 5.446 27 C -0.139 4.139 28 C 0.149 3.851 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.021 0.979 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.404 0.596 36 H 0.235 0.765 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -23.184 17.672 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.352 5.352 14 C 0.381 3.619 15 O -0.412 6.412 16 C -0.182 4.182 17 C -0.060 4.060 18 O -0.077 6.077 19 C 0.029 3.971 20 C -0.020 4.020 21 C -0.088 4.088 22 C -0.139 4.139 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.108 4.108 26 N -0.176 5.176 27 C -0.178 4.178 28 C 0.022 3.978 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.238 0.762 36 H 0.251 0.749 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.331 -22.619 17.154 28.884 hybrid contribution 0.017 0.564 0.390 0.686 sum 5.348 -22.055 17.544 28.685 Atomic orbital electron populations 1.70044 1.05258 1.25428 1.53819 1.25072 0.95297 0.98470 1.00879 0.86232 0.79340 0.83981 0.77255 1.20259 1.21738 1.21581 1.19212 0.92552 0.84756 1.41703 0.91591 1.44110 1.35913 1.01553 1.49964 1.20755 0.88712 0.98058 0.87747 1.22583 1.00553 0.95019 1.00547 1.21140 0.98992 0.88580 0.86587 1.46155 1.09301 1.43390 1.36387 1.16736 0.85316 0.79348 0.80519 1.90842 1.22231 1.64648 1.63513 1.21984 0.88868 1.04577 1.02762 1.25414 0.99895 0.91979 0.88733 1.84416 1.20392 1.54104 1.48817 1.23752 0.80709 0.96359 0.96287 1.17287 0.89396 0.99103 0.96224 1.21251 0.90390 0.98382 0.98789 1.21164 0.99726 0.97171 0.95797 1.21404 0.96488 0.96768 0.97258 1.21090 0.92684 1.00381 0.99850 1.21253 1.00449 0.95051 0.94095 1.70944 1.26158 1.12086 1.08399 1.22334 0.96625 0.99839 0.99050 1.20840 0.98052 0.86689 0.92261 0.93641 0.89230 0.96063 0.92584 0.92774 0.89823 0.76175 0.74919 0.84169 0.84899 0.85399 0.85159 0.85062 0.92523 0.91726 0.96154 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 11.20 55.49 0.62 -25.88 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.94 3.00 -172.33 -0.52 -15.45 16 10 C 0.17 4.28 5.30 -3.71 -0.02 4.26 16 11 C -0.15 -3.00 5.66 -26.60 -0.15 -3.16 16 12 C 0.15 2.71 2.41 -67.87 -0.16 2.54 16 13 N -0.70 -11.04 5.07 -54.81 -0.28 -11.31 16 14 C 0.60 9.67 7.78 -12.50 -0.10 9.58 16 15 O -0.54 -10.15 16.55 5.27 0.09 -10.07 16 16 C -0.06 -0.82 6.99 -83.08 -0.58 -1.40 16 17 C 0.01 0.15 11.94 30.01 0.36 0.51 16 18 O -0.19 -2.04 10.45 5.30 0.06 -1.98 16 19 C 0.23 2.65 7.88 -14.01 -0.11 2.54 16 20 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 21 C -0.07 -0.57 9.68 -39.19 -0.38 -0.95 16 22 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 23 C -0.10 -0.54 10.04 -39.50 -0.40 -0.93 16 24 C -0.12 -0.69 10.03 -39.64 -0.40 -1.08 16 25 C -0.09 -0.64 9.71 -39.19 -0.38 -1.02 16 26 N -0.45 -5.77 10.65 -8.26 -0.09 -5.85 16 27 C -0.14 -2.38 5.55 -26.62 -0.15 -2.53 16 28 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 35 H 0.40 5.63 8.33 -40.82 -0.34 5.29 16 36 H 0.23 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.14 1.17 7.82 -52.48 -0.41 0.76 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.13 0.39 8.06 -52.48 -0.42 -0.04 16 40 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 41 H 0.13 0.79 7.89 -52.49 -0.41 0.38 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -32.91 380.60 -9.21 -42.12 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.06 Total: 3.56 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -3.73 Total: 2.35 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.26 Total: -58.50 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.14 Total: -12.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.91 -9.21 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078117763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.682 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds