Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99577 * 2 1 4 4 H 1.48501 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47195 * 299.99813 * 3 2 1 6 6 H 1.48494 * 109.47482 * 60.00123 * 3 2 1 7 7 C 1.38941 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00053 * 199.10337 * 7 2 1 9 9 N 1.37097 * 119.99851 * 19.09074 * 7 2 1 10 10 C 1.34770 * 119.99986 * 42.84580 * 9 7 2 11 11 O 1.21293 * 120.00308 * 359.97438 * 10 9 7 12 12 C 1.50708 * 120.00209 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47102 * 179.97438 * 12 10 9 14 14 N 1.39513 * 119.12869 * 269.97954 * 13 12 10 15 15 C 1.29970 * 122.69670 * 180.02562 * 14 13 12 16 16 C 1.46302 * 120.01475 * 359.96958 * 15 14 13 17 17 C 1.39616 * 121.86226 * 180.02562 * 16 15 14 18 18 C 1.36684 * 119.67456 * 180.02562 * 17 16 15 19 19 C 1.38906 * 120.91243 * 359.97438 * 18 17 16 20 20 C 1.37766 * 120.69615 * 0.04045 * 19 18 17 21 21 C 1.39426 * 119.39227 * 359.97438 * 20 19 18 22 22 C 1.34938 * 119.12661 * 89.99998 * 13 12 10 23 23 O 1.21814 * 120.62954 * 359.70793 * 22 13 12 24 24 C 1.46506 * 120.00084 * 222.84066 * 9 7 2 25 25 C 1.54261 * 110.03291 * 59.58820 * 24 9 7 26 26 C 1.54968 * 104.16062 * 217.13613 * 25 24 9 27 27 C 1.54893 * 102.77511 * 37.89057 * 26 25 24 28 28 C 1.53881 * 110.03003 * 302.37053 * 24 9 7 29 29 H 0.97008 * 120.00433 * 354.73978 * 1 2 3 30 30 H 1.09008 * 109.46663 * 59.99527 * 12 10 9 31 31 H 1.08997 * 109.46780 * 299.99572 * 12 10 9 32 32 H 1.08002 * 119.99609 * 180.02562 * 15 14 13 33 33 H 1.08010 * 120.16273 * 0.02562 * 17 16 15 34 34 H 1.07998 * 119.54614 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.64776 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.29852 * 180.02562 * 20 19 18 37 37 H 1.09002 * 110.01504 * 180.98332 * 24 9 7 38 38 H 1.08997 * 110.48897 * 335.78387 * 25 24 9 39 39 H 1.09003 * 110.48677 * 98.42473 * 25 24 9 40 40 H 1.08998 * 110.72184 * 279.57303 * 26 25 24 41 41 H 1.09000 * 110.91884 * 156.29329 * 26 25 24 42 42 H 1.08996 * 110.48043 * 203.40404 * 27 26 25 43 43 H 1.08993 * 110.60020 * 80.81679 * 27 26 25 44 44 H 1.09003 * 110.03006 * 238.56862 * 28 24 9 45 45 H 1.08997 * 110.03325 * 359.95039 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2032 -0.0005 8 1 3.0443 -1.2291 0.3056 9 7 1.3800 -2.3577 -0.3894 10 6 0.5749 -2.3553 -1.4702 11 8 0.4064 -1.3317 -2.0987 12 6 -0.1160 -3.6246 -1.8981 13 7 -0.9274 -3.3612 -3.0890 14 7 -2.2546 -2.9611 -2.9316 15 6 -3.0364 -2.7099 -3.9391 16 6 -2.5334 -2.8425 -5.3065 17 6 -3.3391 -2.5821 -6.4166 18 6 -2.8231 -2.7207 -7.6747 19 6 -1.5057 -3.1173 -7.8659 20 6 -0.6874 -3.3814 -6.7895 21 6 -1.1923 -3.2469 -5.4969 22 6 -0.3714 -3.5125 -4.3092 23 8 0.7911 -3.8582 -4.4229 24 6 1.5831 -3.5940 0.3700 25 6 1.1284 -3.3977 1.8309 26 6 2.1575 -4.2066 2.6603 27 6 3.4854 -3.9462 1.9065 28 6 3.0811 -3.9431 0.4178 29 1 -0.4851 0.8365 0.0770 30 1 -0.7587 -3.9779 -1.0916 31 1 0.6305 -4.3849 -2.1274 32 1 -4.0572 -2.4024 -3.7668 33 1 -4.3651 -2.2725 -6.2819 34 1 -3.4483 -2.5191 -8.5319 35 1 -1.1189 -3.2200 -8.8691 36 1 0.3360 -3.6890 -6.9456 37 1 1.0242 -4.4097 -0.0887 38 1 1.1641 -2.3428 2.1031 39 1 0.1239 -3.7959 1.9746 40 1 1.9104 -5.2682 2.6521 41 1 2.2139 -3.8325 3.6825 42 1 4.2001 -4.7446 2.1061 43 1 3.9044 -2.9808 2.1901 44 1 3.2489 -4.9285 -0.0168 45 1 3.6567 -3.1931 -0.1246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078208828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = 17.816842 kcal Electronic energy + Delta-G solvation = -30196.554548 eV Core-core repulsion = 26180.414799 eV Total energy + Delta-G solvation = -4016.139748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73936 -38.93698 -38.15093 -36.83066 -36.43394 -33.42141 -32.82390 -31.58691 -31.35788 -30.40488 -28.05497 -27.79985 -26.80975 -24.64862 -24.21298 -23.28174 -21.94475 -20.10435 -20.00796 -19.39463 -18.46389 -18.15092 -16.79642 -16.65894 -15.92506 -15.36507 -15.26028 -15.09676 -14.85945 -14.55014 -14.39760 -14.03772 -13.88823 -13.62418 -13.36700 -13.19908 -12.86177 -12.70478 -12.43808 -12.18651 -11.92951 -11.76325 -11.56102 -11.27881 -11.00438 -10.82953 -10.74077 -10.61323 -10.58348 -10.45169 -10.40478 -10.16208 -9.99807 -9.80539 -9.56064 -9.44367 -9.19992 -8.70336 -8.34675 -7.80499 -7.01662 -6.04350 -3.76381 0.56890 0.88516 2.25892 2.44842 2.93436 3.32668 3.43778 3.45057 3.92273 4.09314 4.25437 4.41890 4.45755 4.58047 4.72431 4.95282 5.05184 5.16031 5.20513 5.26984 5.36116 5.40025 5.51523 5.55149 5.73186 5.76772 5.80715 5.91097 5.91604 5.96944 6.09822 6.18397 6.18917 6.23341 6.26680 6.29276 6.39489 6.40935 6.47742 6.49583 6.65129 6.66095 6.84800 6.99679 7.23073 7.71007 8.00008 8.29328 8.34791 9.11511 9.23917 9.73092 10.34061 11.04563 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003725 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.880579 B = 7514.665422 C = 8471.238202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.339 4.339 8 H 0.079 0.921 9 N -0.445 5.445 10 C 0.466 3.534 11 O -0.523 6.523 12 C 0.111 3.889 13 N -0.399 5.399 14 N -0.205 5.205 15 C 0.088 3.912 16 C -0.058 4.058 17 C -0.100 4.100 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.056 4.056 21 C -0.119 4.119 22 C 0.531 3.469 23 O -0.522 6.522 24 C 0.129 3.871 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.117 4.117 28 C -0.131 4.131 29 H 0.261 0.739 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.193 0.807 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 -9.581 -7.801 14.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.168 5.168 10 C 0.251 3.749 11 O -0.400 6.400 12 C -0.014 4.014 13 N -0.216 5.216 14 N -0.012 5.012 15 C -0.117 4.117 16 C -0.062 4.062 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.141 4.141 20 C -0.075 4.075 21 C -0.125 4.125 22 C 0.322 3.678 23 O -0.398 6.398 24 C 0.024 3.976 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.154 4.154 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.209 0.791 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.235 -9.187 -7.223 13.246 hybrid contribution 0.340 0.955 -0.724 1.245 sum -5.895 -8.232 -7.947 12.871 Atomic orbital electron populations 1.69847 1.06425 1.27018 1.42896 1.25184 0.94738 0.99164 0.94652 0.86247 0.79971 0.83109 0.77296 1.19620 1.20951 1.21314 1.18837 0.94962 0.83956 1.48878 0.90326 1.43304 1.43877 1.07505 1.22067 1.19889 0.84000 0.88720 0.82253 1.90542 1.62310 1.33011 1.54141 1.21649 0.94369 0.99632 0.85790 1.48600 1.06870 1.59420 1.06702 1.74453 0.90820 1.07274 1.28664 1.24924 0.99811 1.00060 0.86931 1.19832 0.93128 0.98432 0.94829 1.20903 0.99926 0.99800 0.91443 1.21041 0.95536 0.97565 0.97374 1.21252 0.93996 0.99882 0.98965 1.21126 1.00399 0.95640 0.90335 1.20125 0.93697 1.04251 0.94475 1.18491 0.87275 0.78592 0.83474 1.90855 1.15817 1.47546 1.85568 1.21725 0.94772 0.88362 0.92783 1.22659 0.96871 1.02359 0.94401 1.22452 0.95897 0.99189 0.98501 1.22253 0.96798 1.00919 0.95469 1.22459 0.97321 1.00705 0.96517 0.92890 0.87949 0.87598 0.79074 0.84466 0.85249 0.85102 0.84245 0.91924 0.88977 0.92912 0.92508 0.92320 0.92898 0.91586 0.92806 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.68 11.67 55.49 0.65 -24.03 16 2 C 0.07 2.07 4.35 -17.47 -0.08 2.00 16 3 Si 0.91 22.49 29.60 -169.99 -5.03 17.46 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.34 -9.27 7.45 -14.94 -0.11 -9.38 16 8 H 0.08 2.10 7.08 -52.48 -0.37 1.73 16 9 N -0.44 -11.13 2.46 -106.54 -0.26 -11.39 16 10 C 0.47 12.29 7.04 -10.98 -0.08 12.21 16 11 O -0.52 -16.15 14.08 5.55 0.08 -16.07 16 12 C 0.11 2.36 4.44 -5.19 -0.02 2.34 16 13 N -0.40 -8.39 2.99 -62.69 -0.19 -8.58 16 14 N -0.20 -3.86 11.38 31.91 0.36 -3.50 16 15 C 0.09 1.27 11.37 -15.10 -0.17 1.10 16 16 C -0.06 -0.82 5.89 -104.96 -0.62 -1.44 16 17 C -0.10 -1.01 9.81 -39.63 -0.39 -1.40 16 18 C -0.10 -0.88 9.96 -39.90 -0.40 -1.28 16 19 C -0.12 -1.26 10.01 -39.51 -0.40 -1.66 16 20 C -0.06 -0.79 9.67 -39.31 -0.38 -1.17 16 21 C -0.12 -2.02 5.90 -104.80 -0.62 -2.64 16 22 C 0.53 11.11 7.69 -12.72 -0.10 11.01 16 23 O -0.52 -12.07 16.14 5.09 0.08 -11.99 16 24 C 0.13 2.55 3.20 -66.81 -0.21 2.34 16 25 C -0.12 -2.32 6.42 -25.03 -0.16 -2.48 16 26 C -0.12 -1.83 6.91 -24.69 -0.17 -2.01 16 27 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 28 C -0.13 -2.33 6.19 -25.61 -0.16 -2.49 16 29 H 0.26 7.52 8.32 -40.82 -0.34 7.18 16 30 H 0.10 1.96 7.81 -51.92 -0.41 1.56 16 31 H 0.11 2.10 7.02 -51.93 -0.36 1.73 16 32 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 1.92 7.81 -52.49 -0.41 1.51 16 37 H 0.06 1.12 5.82 -51.93 -0.30 0.81 16 38 H 0.09 2.04 7.10 -51.93 -0.37 1.67 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.54 6.85 -51.93 -0.36 1.18 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -37.36 371.68 -8.88 -46.24 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.94 Total: 3.17 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -4.23 Total: 3.08 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.56 Total: -47.50 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: 0.16 Total: -28.06 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.36 -8.88 -46.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.058 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds