Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99577 * 2 1 4 4 H 1.48501 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47195 * 299.99813 * 3 2 1 6 6 H 1.48494 * 109.47482 * 60.00123 * 3 2 1 7 7 C 1.38941 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00053 * 199.10337 * 7 2 1 9 9 N 1.37097 * 119.99851 * 19.09074 * 7 2 1 10 10 C 1.34770 * 119.99986 * 42.84580 * 9 7 2 11 11 O 1.21293 * 120.00308 * 359.97438 * 10 9 7 12 12 C 1.50708 * 120.00209 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47102 * 179.97438 * 12 10 9 14 14 N 1.39513 * 119.12869 * 269.97954 * 13 12 10 15 15 C 1.29970 * 122.69670 * 180.02562 * 14 13 12 16 16 C 1.46302 * 120.01475 * 359.96958 * 15 14 13 17 17 C 1.39616 * 121.86226 * 180.02562 * 16 15 14 18 18 C 1.36684 * 119.67456 * 180.02562 * 17 16 15 19 19 C 1.38906 * 120.91243 * 359.97438 * 18 17 16 20 20 C 1.37766 * 120.69615 * 0.04045 * 19 18 17 21 21 C 1.39426 * 119.39227 * 359.97438 * 20 19 18 22 22 C 1.34938 * 119.12661 * 89.99998 * 13 12 10 23 23 O 1.21814 * 120.62954 * 359.70793 * 22 13 12 24 24 C 1.46506 * 120.00084 * 222.84066 * 9 7 2 25 25 C 1.54261 * 110.03291 * 59.58820 * 24 9 7 26 26 C 1.54968 * 104.16062 * 217.13613 * 25 24 9 27 27 C 1.54893 * 102.77511 * 37.89057 * 26 25 24 28 28 C 1.53881 * 110.03003 * 302.37053 * 24 9 7 29 29 H 0.97008 * 120.00433 * 354.73978 * 1 2 3 30 30 H 1.09008 * 109.46663 * 59.99527 * 12 10 9 31 31 H 1.08997 * 109.46780 * 299.99572 * 12 10 9 32 32 H 1.08002 * 119.99609 * 180.02562 * 15 14 13 33 33 H 1.08010 * 120.16273 * 0.02562 * 17 16 15 34 34 H 1.07998 * 119.54614 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.64776 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.29852 * 180.02562 * 20 19 18 37 37 H 1.09002 * 110.01504 * 180.98332 * 24 9 7 38 38 H 1.08997 * 110.48897 * 335.78387 * 25 24 9 39 39 H 1.09003 * 110.48677 * 98.42473 * 25 24 9 40 40 H 1.08998 * 110.72184 * 279.57303 * 26 25 24 41 41 H 1.09000 * 110.91884 * 156.29329 * 26 25 24 42 42 H 1.08996 * 110.48043 * 203.40404 * 27 26 25 43 43 H 1.08993 * 110.60020 * 80.81679 * 27 26 25 44 44 H 1.09003 * 110.03006 * 238.56862 * 28 24 9 45 45 H 1.08997 * 110.03325 * 359.95039 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2032 -0.0005 8 1 3.0443 -1.2291 0.3056 9 7 1.3800 -2.3577 -0.3894 10 6 0.5749 -2.3553 -1.4702 11 8 0.4064 -1.3317 -2.0987 12 6 -0.1160 -3.6246 -1.8981 13 7 -0.9274 -3.3612 -3.0890 14 7 -2.2546 -2.9611 -2.9316 15 6 -3.0364 -2.7099 -3.9391 16 6 -2.5334 -2.8425 -5.3065 17 6 -3.3391 -2.5821 -6.4166 18 6 -2.8231 -2.7207 -7.6747 19 6 -1.5057 -3.1173 -7.8659 20 6 -0.6874 -3.3814 -6.7895 21 6 -1.1923 -3.2469 -5.4969 22 6 -0.3714 -3.5125 -4.3092 23 8 0.7911 -3.8582 -4.4229 24 6 1.5831 -3.5940 0.3700 25 6 1.1284 -3.3977 1.8309 26 6 2.1575 -4.2066 2.6603 27 6 3.4854 -3.9462 1.9065 28 6 3.0811 -3.9431 0.4178 29 1 -0.4851 0.8365 0.0770 30 1 -0.7587 -3.9779 -1.0916 31 1 0.6305 -4.3849 -2.1274 32 1 -4.0572 -2.4024 -3.7668 33 1 -4.3651 -2.2725 -6.2819 34 1 -3.4483 -2.5191 -8.5319 35 1 -1.1189 -3.2200 -8.8691 36 1 0.3360 -3.6890 -6.9456 37 1 1.0242 -4.4097 -0.0887 38 1 1.1641 -2.3428 2.1031 39 1 0.1239 -3.7959 1.9746 40 1 1.9104 -5.2682 2.6521 41 1 2.2139 -3.8325 3.6825 42 1 4.2001 -4.7446 2.1061 43 1 3.9044 -2.9808 2.1901 44 1 3.2489 -4.9285 -0.0168 45 1 3.6567 -3.1931 -0.1246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078208828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = -7.073899 kcal Electronic energy + Delta-G solvation = -30197.633891 eV Core-core repulsion = 26180.414799 eV Total energy + Delta-G solvation = -4017.219092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.04621 -40.60867 -39.40398 -38.38840 -37.93288 -35.26409 -34.36892 -33.45166 -32.44691 -31.53414 -29.54917 -29.37699 -28.39407 -26.43350 -25.33870 -24.67502 -23.00913 -21.81745 -21.38952 -21.06067 -19.70805 -19.39128 -18.63176 -18.02820 -17.73622 -16.89645 -16.57465 -16.48528 -16.31036 -15.96761 -15.85727 -15.54058 -15.31957 -15.09662 -14.92556 -14.45417 -14.18565 -14.11910 -14.02071 -13.54615 -13.34335 -13.14037 -13.07703 -12.92120 -12.61043 -12.54512 -12.50800 -12.31064 -12.10629 -11.91783 -11.85036 -11.78084 -11.38555 -11.35353 -10.93027 -10.82215 -10.69477 -10.18304 -10.02097 -9.39131 -9.05924 -8.19888 -5.93485 -0.49820 -0.10006 1.04227 1.12750 1.29717 1.38263 1.45045 1.77155 2.20674 2.39995 2.82424 2.94951 3.11204 3.23975 3.43930 3.64455 3.84343 3.85959 3.91445 3.98372 4.12674 4.16504 4.23288 4.30428 4.33752 4.41103 4.54391 4.56869 4.68591 4.79112 4.81507 4.88228 4.91854 4.95093 5.00424 5.11382 5.18968 5.24502 5.29270 5.35529 5.38684 5.42666 5.51926 5.57131 5.68844 5.82523 6.22185 6.56230 6.95528 7.02309 7.20528 7.67993 8.31703 8.89295 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003725 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.880579 B = 7514.665422 C = 8471.238202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.260 1.260 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.344 4.344 8 H 0.078 0.922 9 N -0.453 5.453 10 C 0.451 3.549 11 O -0.581 6.581 12 C 0.125 3.875 13 N -0.413 5.413 14 N -0.264 5.264 15 C 0.118 3.882 16 C -0.083 4.083 17 C -0.080 4.080 18 C -0.083 4.083 19 C -0.104 4.104 20 C -0.082 4.082 21 C -0.156 4.156 22 C 0.512 3.488 23 O -0.572 6.572 24 C 0.117 3.883 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.112 4.112 28 C -0.129 4.129 29 H 0.256 0.744 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.244 0.756 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.166 0.834 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 -10.577 -9.334 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.182 4.182 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.472 4.472 8 H 0.095 0.905 9 N -0.175 5.175 10 C 0.238 3.762 11 O -0.462 6.462 12 C -0.001 4.001 13 N -0.229 5.229 14 N -0.071 5.071 15 C -0.086 4.086 16 C -0.087 4.087 17 C -0.100 4.100 18 C -0.101 4.101 19 C -0.123 4.123 20 C -0.101 4.101 21 C -0.162 4.162 22 C 0.305 3.695 23 O -0.451 6.451 24 C 0.013 3.987 25 C -0.161 4.161 26 C -0.146 4.146 27 C -0.149 4.149 28 C -0.168 4.168 29 H 0.065 0.935 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.260 0.740 33 H 0.202 0.798 34 H 0.197 0.803 35 H 0.184 0.816 36 H 0.143 0.857 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.345 -10.215 -8.703 15.803 hybrid contribution 0.870 1.241 -0.485 1.591 sum -7.476 -8.974 -9.188 14.861 Atomic orbital electron populations 1.69961 1.07733 1.27076 1.44922 1.25927 0.95426 1.02139 0.94752 0.85405 0.79440 0.79627 0.76915 1.18396 1.22925 1.19427 1.19027 0.95075 0.85229 1.47828 0.90457 1.43559 1.43038 1.08597 1.22308 1.20738 0.83887 0.89707 0.81870 1.90477 1.64350 1.35395 1.55932 1.21370 0.94754 0.96943 0.87053 1.48574 1.08013 1.60115 1.06162 1.74487 0.90164 1.11681 1.30745 1.25953 1.00818 0.95167 0.86709 1.20057 0.92558 1.00017 0.96040 1.21477 1.01277 0.96992 0.90253 1.21667 0.95073 0.94712 0.98647 1.21724 0.94266 0.97156 0.99179 1.21234 1.00771 0.97458 0.90647 1.20201 0.95039 1.07189 0.93745 1.19312 0.87400 0.77932 0.84813 1.90780 1.17753 1.50240 1.86361 1.22095 0.96815 0.86672 0.93102 1.22569 0.98756 1.00562 0.94201 1.22417 0.93753 1.00223 0.98239 1.22240 0.97835 1.01385 0.93474 1.22434 0.95079 1.00971 0.98278 0.93505 0.86330 0.86987 0.74017 0.79784 0.80284 0.81634 0.85714 0.89973 0.93159 0.92116 0.89514 0.90980 0.89560 0.93197 0.90181 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -54.07 11.67 21.66 0.25 -53.82 16 2 C 0.02 1.43 4.35 84.92 0.37 1.80 16 3 Si 0.96 48.12 29.60 68.60 2.03 50.15 16 4 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.34 -19.76 7.45 84.04 0.63 -19.14 16 8 H 0.08 4.34 7.08 -2.91 -0.02 4.32 16 9 N -0.45 -23.91 2.46 -609.37 -1.50 -25.41 16 10 C 0.45 25.30 7.04 87.66 0.62 25.92 16 11 O -0.58 -38.28 14.08 -3.07 -0.04 -38.33 16 12 C 0.12 5.66 4.44 85.64 0.38 6.04 16 13 N -0.41 -18.49 2.99 -470.32 -1.41 -19.90 16 14 N -0.26 -10.27 11.38 -52.95 -0.60 -10.87 16 15 C 0.12 3.25 11.37 87.07 0.99 4.24 16 16 C -0.08 -2.20 5.89 -20.08 -0.12 -2.32 16 17 C -0.08 -1.22 9.81 22.24 0.22 -1.00 16 18 C -0.08 -1.04 9.96 22.07 0.22 -0.82 16 19 C -0.10 -1.82 10.01 22.32 0.22 -1.59 16 20 C -0.08 -2.32 9.67 22.44 0.22 -2.10 16 21 C -0.16 -5.44 5.90 -19.98 -0.12 -5.55 16 22 C 0.51 23.07 7.69 86.46 0.67 23.73 16 23 O -0.57 -28.89 16.14 -4.71 -0.08 -28.97 16 24 C 0.12 4.74 3.20 45.71 0.15 4.89 16 25 C -0.12 -4.59 6.42 31.69 0.20 -4.39 16 26 C -0.11 -3.02 6.91 31.91 0.22 -2.80 16 27 C -0.11 -3.29 6.83 31.67 0.22 -3.07 16 28 C -0.13 -4.58 6.19 31.32 0.19 -4.38 16 29 H 0.26 15.52 8.32 -92.70 -0.77 14.75 16 30 H 0.12 4.80 7.81 -2.38 -0.02 4.78 16 31 H 0.11 4.77 7.02 -2.39 -0.02 4.76 16 32 H 0.24 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.12 3.73 7.81 -2.91 -0.02 3.71 16 37 H 0.08 2.96 5.82 -2.39 -0.01 2.95 16 38 H 0.05 2.31 7.10 -2.39 -0.02 2.30 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.04 1.85 6.85 -2.39 -0.02 1.83 16 Total: -1.00 -93.15 371.68 4.94 -88.21 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 1.01 Total: 19.49 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 5.27 Total: 19.45 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -3.26 Total: -109.99 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -0.12 Total: -67.30 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -93.15 4.94 -88.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.133 kcal (2) G-P(sol) polarization free energy of solvation -93.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds