Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99863 * 2 1 4 4 H 1.48506 * 109.47107 * 240.00308 * 3 2 1 5 5 H 1.48494 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47027 * 120.00498 * 3 2 1 7 7 C 1.37872 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99805 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00123 * 269.99899 * 10 9 7 12 12 C 1.53000 * 109.47268 * 270.00262 * 11 10 9 13 13 C 1.53001 * 117.49825 * 243.61921 * 12 11 10 14 14 C 1.52999 * 60.00072 * 252.50978 * 13 12 11 15 15 C 1.34779 * 120.00169 * 90.00231 * 10 9 7 16 16 O 1.21282 * 119.99922 * 359.97438 * 15 10 9 17 17 C 1.50699 * 120.00037 * 179.97438 * 15 10 9 18 18 N 1.46506 * 109.46928 * 179.97438 * 17 15 10 19 19 N 1.39511 * 119.12732 * 269.72851 * 18 17 15 20 20 C 1.29969 * 122.69349 * 179.67848 * 19 18 17 21 21 C 1.46301 * 120.01246 * 0.59313 * 20 19 18 22 22 C 1.39620 * 121.85273 * 179.64653 * 21 20 19 23 23 C 1.36684 * 119.66911 * 180.02562 * 22 21 20 24 24 C 1.38905 * 120.91632 * 0.03834 * 23 22 21 25 25 C 1.37763 * 120.69511 * 0.02562 * 24 23 22 26 26 C 1.39432 * 119.39662 * 359.97438 * 25 24 23 27 27 C 1.34938 * 119.12199 * 90.00433 * 18 17 15 28 28 O 1.21808 * 120.63252 * 0.02562 * 27 18 17 29 29 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47458 * 59.99915 * 9 7 2 31 31 H 1.09005 * 109.47030 * 300.00103 * 9 7 2 32 32 H 1.09004 * 109.46865 * 29.99581 * 11 10 9 33 33 H 1.08998 * 109.47138 * 150.00131 * 11 10 9 34 34 H 1.08998 * 115.55129 * 29.32631 * 12 11 10 35 35 H 1.08999 * 117.49602 * 0.02562 * 13 12 11 36 36 H 1.08997 * 117.49615 * 145.01767 * 13 12 11 37 37 H 1.09000 * 117.49433 * 252.51452 * 14 13 12 38 38 H 1.08990 * 117.50056 * 107.48879 * 14 13 12 39 39 H 1.09004 * 109.47103 * 59.99751 * 17 15 10 40 40 H 1.09000 * 109.47247 * 299.99628 * 17 15 10 41 41 H 1.08006 * 119.99404 * 180.31762 * 20 19 18 42 42 H 1.08002 * 120.16342 * 0.02562 * 22 21 20 43 43 H 1.07996 * 119.54296 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.65039 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.30278 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6790 -4.1694 -1.2692 12 6 1.7483 -5.3006 -1.7109 13 6 2.3403 -6.7087 -1.7993 14 6 2.0087 -5.9366 -3.0779 15 6 2.6409 -4.1249 1.1667 16 8 2.2472 -3.6637 2.2170 17 6 3.6198 -5.2707 1.1666 18 7 3.9376 -5.6414 2.5479 19 7 5.0151 -5.0258 3.1854 20 6 5.3545 -5.2974 4.4103 21 6 4.6034 -6.2939 5.1740 22 6 4.9389 -6.6206 6.4893 23 6 4.2066 -7.5590 7.1612 24 6 3.1314 -8.1947 6.5534 25 6 2.7781 -7.8936 5.2564 26 6 3.5107 -6.9395 4.5514 27 6 3.1839 -6.5733 3.1678 28 8 2.2510 -7.1020 2.5898 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8902 31 1 0.6247 -2.5570 0.8897 32 1 2.6867 -3.3877 -2.0289 33 1 3.6885 -4.5594 -1.1389 34 1 0.7114 -5.2096 -1.3875 35 1 3.3927 -6.8292 -1.5424 36 1 1.6928 -7.5443 -1.5338 37 1 1.1431 -6.2644 -3.6535 38 1 2.8430 -5.5491 -3.6625 39 1 4.5324 -4.9689 0.6526 40 1 3.1790 -6.1251 0.6530 41 1 6.1940 -4.7906 4.8630 42 1 5.7729 -6.1343 6.9734 43 1 4.4677 -7.8098 8.1787 44 1 2.5671 -8.9333 7.1033 45 1 1.9407 -8.3914 4.7902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = 36.024241 kcal Electronic energy + Delta-G solvation = -29480.544512 eV Core-core repulsion = 25465.194296 eV Total energy + Delta-G solvation = -4015.350216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03262 -39.30219 -38.30356 -37.17998 -36.91625 -34.43436 -33.33863 -32.49411 -31.65733 -30.66950 -28.76179 -27.35978 -25.91022 -24.46889 -24.04465 -22.51203 -22.25594 -22.16391 -20.67167 -19.12988 -18.68323 -18.22947 -17.04259 -16.91883 -16.44395 -15.71254 -15.53324 -15.35960 -15.12524 -14.88602 -14.65926 -14.53540 -14.14541 -14.01860 -13.73589 -13.49820 -13.09492 -12.88214 -12.48922 -12.41401 -12.37416 -12.07827 -11.80290 -11.73678 -11.41008 -11.38572 -11.19533 -10.97056 -10.88269 -10.58049 -10.31594 -10.08074 -9.93039 -9.76471 -9.74942 -9.61181 -9.39184 -8.98728 -8.41072 -8.32028 -7.68964 -6.01825 -4.06607 0.34159 0.69294 2.00900 2.09988 2.68433 3.32922 3.34602 3.37795 3.42031 3.66125 3.84201 3.89204 4.05056 4.23026 4.39099 4.46677 4.55569 4.86676 4.88118 4.95922 5.00947 5.05913 5.13321 5.28420 5.32444 5.34049 5.35566 5.38868 5.51956 5.60483 5.67669 5.73253 5.85533 5.94602 6.02340 6.04588 6.06534 6.09407 6.15843 6.22033 6.47450 6.49117 7.06211 7.46266 7.54022 7.69985 7.93915 7.98001 8.25354 8.37890 8.90403 9.06022 9.58047 11.06340 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.003499 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.529228 B = 8000.268873 C = 9733.850831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.248 3.752 10 N -0.591 5.591 11 C 0.140 3.860 12 C -0.167 4.167 13 C -0.186 4.186 14 C -0.174 4.174 15 C 0.499 3.501 16 O -0.530 6.530 17 C 0.107 3.893 18 N -0.409 5.409 19 N -0.218 5.218 20 C 0.102 3.898 21 C -0.063 4.063 22 C -0.097 4.097 23 C -0.095 4.095 24 C -0.117 4.117 25 C -0.056 4.056 26 C -0.119 4.119 27 C 0.533 3.467 28 O -0.518 6.518 29 H 0.264 0.736 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.196 0.804 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.034 -18.037 7.519 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.130 3.870 10 N -0.323 5.323 11 C 0.015 3.985 12 C -0.187 4.187 13 C -0.223 4.223 14 C -0.212 4.212 15 C 0.283 3.717 16 O -0.406 6.406 17 C -0.018 4.018 18 N -0.227 5.227 19 N -0.025 5.025 20 C -0.104 4.104 21 C -0.067 4.067 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.137 4.137 25 C -0.075 4.075 26 C -0.125 4.125 27 C 0.324 3.676 28 O -0.393 6.393 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.213 0.787 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.248 -17.403 6.842 21.822 hybrid contribution 0.071 0.554 0.566 0.795 sum 11.319 -16.848 7.408 21.607 Atomic orbital electron populations 1.69928 1.05997 1.27090 1.50349 1.24931 0.94870 0.99186 0.95082 0.86558 0.79513 0.82727 0.78618 1.20196 1.21199 1.20215 1.21390 0.93322 0.90633 1.51176 0.92458 1.19289 0.87377 0.81919 0.98464 1.48143 1.45757 1.34758 1.03602 1.21074 0.94890 0.94911 0.87576 1.22948 1.01627 0.93814 1.00266 1.23054 1.01369 0.95437 1.02421 1.22891 1.03356 1.04267 0.90647 1.20385 0.82635 0.83909 0.84767 1.90687 1.57814 1.61124 1.30976 1.21655 1.00674 0.99664 0.79807 1.48557 1.25297 1.35059 1.13737 1.74435 1.01848 1.14647 1.11590 1.24994 0.99723 0.96020 0.89638 1.19808 0.95066 0.96398 0.95384 1.20927 1.00288 0.97864 0.92684 1.21084 0.94702 0.95361 1.00164 1.21295 0.97490 1.00241 0.94648 1.21145 0.97979 0.94475 0.93861 1.20075 0.97973 1.00278 0.94217 1.18529 0.82446 0.79808 0.86831 1.90876 1.27842 1.53795 1.66751 0.92682 0.94752 0.94008 0.89038 0.91603 0.87246 0.89051 0.88981 0.88957 0.88705 0.86732 0.85954 0.78719 0.84287 0.85048 0.84904 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -15.17 9.39 -34.44 -0.32 -15.50 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 6.67 5.16 -5.19 -0.03 6.65 16 10 N -0.59 -12.96 2.46 -175.06 -0.43 -13.39 16 11 C 0.14 2.32 5.49 -4.04 -0.02 2.30 16 12 C -0.17 -2.47 5.95 -90.62 -0.54 -3.01 16 13 C -0.19 -2.26 9.18 -26.73 -0.25 -2.50 16 14 C -0.17 -2.04 10.25 -26.73 -0.27 -2.31 16 15 C 0.50 11.20 7.74 -10.99 -0.08 11.12 16 16 O -0.53 -14.47 16.01 5.56 0.09 -14.38 16 17 C 0.11 1.86 4.68 -5.19 -0.02 1.83 16 18 N -0.41 -7.23 2.99 -62.69 -0.19 -7.42 16 19 N -0.22 -3.40 11.38 31.91 0.36 -3.03 16 20 C 0.10 1.18 11.37 -15.10 -0.17 1.01 16 21 C -0.06 -0.73 5.89 -104.95 -0.62 -1.35 16 22 C -0.10 -0.78 9.81 -39.63 -0.39 -1.17 16 23 C -0.09 -0.69 9.96 -39.90 -0.40 -1.09 16 24 C -0.12 -1.01 10.01 -39.51 -0.40 -1.40 16 25 C -0.06 -0.67 9.67 -39.31 -0.38 -1.05 16 26 C -0.12 -1.73 5.90 -104.80 -0.62 -2.35 16 27 C 0.53 9.60 7.69 -12.72 -0.10 9.50 16 28 O -0.52 -10.44 16.14 5.09 0.08 -10.35 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 33 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 34 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 35 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.11 1.66 7.40 -51.93 -0.38 1.27 16 40 H 0.12 1.97 6.08 -51.93 -0.32 1.65 16 41 H 0.20 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.14 1.65 7.81 -52.49 -0.41 1.24 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -38.37 386.54 -9.24 -47.61 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.99 Total: 1.96 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -4.70 Total: 2.36 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.48 Total: -50.17 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.17 Total: -24.73 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.37 -9.24 -47.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.637 kcal (2) G-P(sol) polarization free energy of solvation -38.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds