Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99863 * 2 1 4 4 H 1.48506 * 109.47107 * 240.00308 * 3 2 1 5 5 H 1.48494 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47027 * 120.00498 * 3 2 1 7 7 C 1.37872 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99805 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00123 * 269.99899 * 10 9 7 12 12 C 1.53000 * 109.47268 * 270.00262 * 11 10 9 13 13 C 1.53001 * 117.49825 * 243.61921 * 12 11 10 14 14 C 1.52999 * 60.00072 * 252.50978 * 13 12 11 15 15 C 1.34779 * 120.00169 * 90.00231 * 10 9 7 16 16 O 1.21282 * 119.99922 * 359.97438 * 15 10 9 17 17 C 1.50699 * 120.00037 * 179.97438 * 15 10 9 18 18 N 1.46506 * 109.46928 * 179.97438 * 17 15 10 19 19 N 1.39511 * 119.12732 * 269.72851 * 18 17 15 20 20 C 1.29969 * 122.69349 * 179.67848 * 19 18 17 21 21 C 1.46301 * 120.01246 * 0.59313 * 20 19 18 22 22 C 1.39620 * 121.85273 * 179.64653 * 21 20 19 23 23 C 1.36684 * 119.66911 * 180.02562 * 22 21 20 24 24 C 1.38905 * 120.91632 * 0.03834 * 23 22 21 25 25 C 1.37763 * 120.69511 * 0.02562 * 24 23 22 26 26 C 1.39432 * 119.39662 * 359.97438 * 25 24 23 27 27 C 1.34938 * 119.12199 * 90.00433 * 18 17 15 28 28 O 1.21808 * 120.63252 * 0.02562 * 27 18 17 29 29 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47458 * 59.99915 * 9 7 2 31 31 H 1.09005 * 109.47030 * 300.00103 * 9 7 2 32 32 H 1.09004 * 109.46865 * 29.99581 * 11 10 9 33 33 H 1.08998 * 109.47138 * 150.00131 * 11 10 9 34 34 H 1.08998 * 115.55129 * 29.32631 * 12 11 10 35 35 H 1.08999 * 117.49602 * 0.02562 * 13 12 11 36 36 H 1.08997 * 117.49615 * 145.01767 * 13 12 11 37 37 H 1.09000 * 117.49433 * 252.51452 * 14 13 12 38 38 H 1.08990 * 117.50056 * 107.48879 * 14 13 12 39 39 H 1.09004 * 109.47103 * 59.99751 * 17 15 10 40 40 H 1.09000 * 109.47247 * 299.99628 * 17 15 10 41 41 H 1.08006 * 119.99404 * 180.31762 * 20 19 18 42 42 H 1.08002 * 120.16342 * 0.02562 * 22 21 20 43 43 H 1.07996 * 119.54296 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.65039 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.30278 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6790 -4.1694 -1.2692 12 6 1.7483 -5.3006 -1.7109 13 6 2.3403 -6.7087 -1.7993 14 6 2.0087 -5.9366 -3.0779 15 6 2.6409 -4.1249 1.1667 16 8 2.2472 -3.6637 2.2170 17 6 3.6198 -5.2707 1.1666 18 7 3.9376 -5.6414 2.5479 19 7 5.0151 -5.0258 3.1854 20 6 5.3545 -5.2974 4.4103 21 6 4.6034 -6.2939 5.1740 22 6 4.9389 -6.6206 6.4893 23 6 4.2066 -7.5590 7.1612 24 6 3.1314 -8.1947 6.5534 25 6 2.7781 -7.8936 5.2564 26 6 3.5107 -6.9395 4.5514 27 6 3.1839 -6.5733 3.1678 28 8 2.2510 -7.1020 2.5898 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8902 31 1 0.6247 -2.5570 0.8897 32 1 2.6867 -3.3877 -2.0289 33 1 3.6885 -4.5594 -1.1389 34 1 0.7114 -5.2096 -1.3875 35 1 3.3927 -6.8292 -1.5424 36 1 1.6928 -7.5443 -1.5338 37 1 1.1431 -6.2644 -3.6535 38 1 2.8430 -5.5491 -3.6625 39 1 4.5324 -4.9689 0.6526 40 1 3.1790 -6.1251 0.6530 41 1 6.1940 -4.7906 4.8630 42 1 5.7729 -6.1343 6.9734 43 1 4.4677 -7.8098 8.1787 44 1 2.5671 -8.9333 7.1033 45 1 1.9407 -8.3914 4.7902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = 10.247660 kcal Electronic energy + Delta-G solvation = -29481.662269 eV Core-core repulsion = 25465.194296 eV Total energy + Delta-G solvation = -4016.467973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15601 -40.81171 -39.38525 -38.46802 -38.07122 -36.22975 -34.74990 -34.37035 -32.49611 -31.59141 -30.48226 -28.89116 -27.55447 -25.43725 -25.37360 -24.23990 -23.22719 -23.03316 -21.96061 -20.53857 -19.72477 -19.38838 -18.67117 -18.50155 -18.17139 -17.16968 -16.65935 -16.54223 -16.44110 -16.37834 -15.93773 -15.72062 -15.57425 -14.95961 -14.93899 -14.53116 -14.51964 -14.39134 -14.05288 -13.79466 -13.41515 -13.38542 -13.25404 -13.09537 -12.90439 -12.65777 -12.61404 -12.57779 -12.32273 -12.24733 -11.95185 -11.79533 -11.34258 -11.23125 -10.89871 -10.85649 -10.67509 -10.44093 -10.16505 -9.56615 -9.45297 -8.25369 -6.41131 -0.53984 -0.11866 0.94157 1.07779 1.34502 1.39906 1.47165 1.62830 1.69695 2.20619 2.39852 2.81651 2.88422 2.91938 3.04083 3.41029 3.50133 3.62748 3.77115 3.84904 3.96298 4.01012 4.06163 4.13201 4.19732 4.29107 4.31560 4.37929 4.55894 4.66211 4.72351 4.79453 4.79777 4.88993 4.93845 4.98885 5.02888 5.14422 5.21918 5.24609 5.29560 5.34414 5.38375 5.50047 5.76428 5.81125 6.00722 6.47681 6.60148 6.68363 6.87142 7.19298 7.34252 8.82408 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.003499 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.529228 B = 8000.268873 C = 9733.850831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.267 3.733 10 N -0.594 5.594 11 C 0.139 3.861 12 C -0.198 4.198 13 C -0.173 4.173 14 C -0.149 4.149 15 C 0.489 3.511 16 O -0.591 6.591 17 C 0.122 3.878 18 N -0.422 5.422 19 N -0.268 5.268 20 C 0.129 3.871 21 C -0.085 4.085 22 C -0.078 4.078 23 C -0.084 4.084 24 C -0.105 4.105 25 C -0.082 4.082 26 C -0.156 4.156 27 C 0.515 3.485 28 O -0.566 6.566 29 H 0.268 0.732 30 H 0.023 0.977 31 H -0.013 1.013 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.248 0.752 42 H 0.186 0.814 43 H 0.178 0.822 44 H 0.164 0.836 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.018 -18.707 9.305 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.075 0.925 9 C 0.146 3.854 10 N -0.324 5.324 11 C 0.017 3.983 12 C -0.218 4.218 13 C -0.210 4.210 14 C -0.186 4.186 15 C 0.276 3.724 16 O -0.472 6.472 17 C -0.003 4.003 18 N -0.238 5.238 19 N -0.075 5.075 20 C -0.076 4.076 21 C -0.088 4.088 22 C -0.098 4.098 23 C -0.102 4.102 24 C -0.123 4.123 25 C -0.101 4.101 26 C -0.162 4.162 27 C 0.308 3.692 28 O -0.445 6.445 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.005 0.995 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.149 0.851 41 H 0.264 0.736 42 H 0.203 0.797 43 H 0.195 0.805 44 H 0.181 0.819 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.279 -18.102 8.587 25.196 hybrid contribution -1.178 0.655 0.243 1.369 sum 14.102 -17.447 8.829 24.108 Atomic orbital electron populations 1.70071 1.07784 1.28317 1.50851 1.25939 0.95827 1.03321 0.94226 0.85395 0.78245 0.77568 0.79169 1.18000 1.20296 1.20264 1.21647 0.93367 0.91618 1.51543 0.92468 1.18700 0.87790 0.83755 0.95191 1.48135 1.44672 1.33659 1.05923 1.21346 0.96957 0.95237 0.84791 1.22675 0.99736 0.95246 1.04111 1.23154 1.02256 0.93359 1.02246 1.23023 1.04180 1.01857 0.89549 1.21377 0.82688 0.84564 0.83723 1.90630 1.60126 1.63348 1.33107 1.21524 1.00185 0.97371 0.81257 1.48602 1.26152 1.35205 1.13840 1.74487 1.02303 1.16780 1.13883 1.26008 0.99300 0.94036 0.88223 1.20055 0.94723 0.96876 0.97177 1.21495 1.00762 0.96933 0.90615 1.21673 0.92999 0.93668 1.01832 1.21725 0.97689 0.99997 0.92932 1.21239 0.98214 0.95018 0.95657 1.20184 1.00501 1.02600 0.92918 1.19292 0.81924 0.79593 0.88390 1.90809 1.29818 1.55741 1.68095 0.92368 0.95893 0.99463 0.89607 0.87958 0.90664 0.86978 0.89148 0.88095 0.86501 0.83590 0.85106 0.73586 0.79661 0.80488 0.81871 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.62 13.29 21.45 0.28 -58.33 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.54 -32.73 9.39 25.60 0.24 -32.49 16 8 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 9 C 0.27 15.53 5.16 85.63 0.44 15.97 16 10 N -0.59 -27.85 2.46 -826.14 -2.03 -29.88 16 11 C 0.14 4.73 5.49 86.38 0.47 5.21 16 12 C -0.20 -6.08 5.95 -10.79 -0.06 -6.15 16 13 C -0.17 -4.09 9.18 30.59 0.28 -3.81 16 14 C -0.15 -3.28 10.25 30.59 0.31 -2.97 16 15 C 0.49 23.55 7.74 87.66 0.68 24.23 16 16 O -0.59 -35.04 16.01 -3.04 -0.05 -35.09 16 17 C 0.12 4.41 4.68 85.63 0.40 4.81 16 18 N -0.42 -15.63 2.99 -470.32 -1.41 -17.04 16 19 N -0.27 -8.33 11.38 -52.95 -0.60 -8.93 16 20 C 0.13 2.72 11.37 87.07 0.99 3.71 16 21 C -0.08 -1.81 5.89 -20.08 -0.12 -1.93 16 22 C -0.08 -0.88 9.81 22.24 0.22 -0.66 16 23 C -0.08 -0.80 9.96 22.07 0.22 -0.58 16 24 C -0.10 -1.51 10.01 22.32 0.22 -1.28 16 25 C -0.08 -2.01 9.67 22.45 0.22 -1.79 16 26 C -0.16 -4.66 5.90 -19.98 -0.12 -4.78 16 27 C 0.51 19.94 7.69 86.46 0.67 20.60 16 28 O -0.57 -25.11 16.14 -4.69 -0.08 -25.19 16 29 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 31 H -0.01 -0.87 7.42 -2.38 -0.02 -0.89 16 32 H 0.09 2.98 8.07 -2.38 -0.02 2.96 16 33 H 0.10 2.69 6.17 -2.39 -0.01 2.68 16 34 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.11 2.19 7.87 -2.39 -0.02 2.17 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.15 4.18 7.40 -2.38 -0.02 4.16 16 40 H 0.13 4.41 6.08 -2.39 -0.01 4.40 16 41 H 0.25 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 43 H 0.18 0.20 8.06 -2.91 -0.02 0.17 16 44 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 45 H 0.13 3.28 7.81 -2.91 -0.02 3.26 16 Total: -1.00 -95.59 386.54 4.68 -90.91 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.01 Total: 16.55 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.53 Total: 18.88 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -3.76 Total: -114.18 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -0.12 Total: -60.28 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -95.59 4.68 -90.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.153 kcal (2) G-P(sol) polarization free energy of solvation -95.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds