Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47440 * 270.00215 * 3 2 1 5 5 H 1.48502 * 109.47186 * 29.99932 * 3 2 1 6 6 H 1.48497 * 109.47245 * 149.99666 * 3 2 1 7 7 C 1.38943 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00445 * 202.97118 * 7 2 1 9 9 N 1.37103 * 119.99866 * 22.97521 * 7 2 1 10 10 C 1.34773 * 120.00097 * 53.93261 * 9 7 2 11 11 O 1.21298 * 119.99828 * 179.97438 * 10 9 7 12 12 C 1.50696 * 120.00014 * 0.02562 * 10 9 7 13 13 N 1.46500 * 109.47129 * 179.97438 * 12 10 9 14 14 C 1.35851 * 119.70040 * 269.72442 * 13 12 10 15 15 N 1.29843 * 123.36787 * 179.72808 * 14 13 12 16 16 C 1.35648 * 121.61253 * 0.55040 * 15 14 13 17 17 C 1.39647 * 121.64203 * 179.73850 * 16 15 14 18 18 C 1.37669 * 119.68216 * 180.02562 * 17 16 15 19 19 C 1.38882 * 120.82260 * 359.97438 * 18 17 16 20 20 C 1.37764 * 120.56829 * 359.97438 * 19 18 17 21 21 C 1.39331 * 119.51926 * 0.02562 * 20 19 18 22 22 C 1.35347 * 119.69560 * 89.99806 * 13 12 10 23 23 O 1.21727 * 121.30098 * 0.02562 * 22 13 12 24 24 C 1.46499 * 119.99785 * 233.93183 * 9 7 2 25 25 C 1.54264 * 110.03146 * 59.38267 * 24 9 7 26 26 C 1.54968 * 104.16540 * 217.13391 * 25 24 9 27 27 C 1.54893 * 102.77374 * 37.88840 * 26 25 24 28 28 C 1.53875 * 110.03534 * 302.17077 * 24 9 7 29 29 H 0.97001 * 119.99928 * 354.68751 * 1 2 3 30 30 H 1.09003 * 109.46901 * 299.99782 * 12 10 9 31 31 H 1.08998 * 109.47944 * 59.99757 * 12 10 9 32 32 H 1.07998 * 118.31663 * 359.97438 * 14 13 12 33 33 H 1.08002 * 120.15880 * 0.02562 * 17 16 15 34 34 H 1.08009 * 119.58323 * 180.02562 * 18 17 16 35 35 H 1.08002 * 119.71173 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.23484 * 179.97438 * 20 19 18 37 37 H 1.08999 * 110.02093 * 180.77496 * 24 9 7 38 38 H 1.09005 * 110.48865 * 335.78492 * 25 24 9 39 39 H 1.09003 * 110.48778 * 98.42500 * 25 24 9 40 40 H 1.08998 * 110.72098 * 279.57962 * 26 25 24 41 41 H 1.09000 * 110.92395 * 156.29583 * 26 25 24 42 42 H 1.08997 * 110.48944 * 203.40810 * 27 26 25 43 43 H 1.09010 * 110.59733 * 80.81743 * 27 26 25 44 44 H 1.09004 * 110.03031 * 238.56901 * 28 24 9 45 45 H 1.09004 * 110.03431 * 359.94564 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0246 -1.2403 0.3656 9 7 1.4049 -2.3437 -0.4624 10 6 0.8554 -2.3634 -1.6929 11 8 0.3215 -3.3725 -2.1026 12 6 0.9055 -1.1320 -2.5602 13 7 0.2456 -1.4081 -3.8387 14 6 0.9717 -1.8903 -4.8807 15 7 0.4595 -2.1643 -6.0419 16 6 -0.8583 -1.9735 -6.3007 17 6 -1.4088 -2.2628 -7.5511 18 6 -2.7517 -2.0533 -7.7697 19 6 -3.5680 -1.5575 -6.7614 20 6 -3.0484 -1.2655 -5.5194 21 6 -1.6917 -1.4704 -5.2773 22 6 -1.0810 -1.1750 -3.9726 23 8 -1.7427 -0.7380 -3.0491 24 6 1.3568 -3.5410 0.3805 25 6 0.6142 -3.2311 1.6966 26 6 1.3848 -4.0443 2.7674 27 6 2.8577 -3.9047 2.3090 28 6 2.7825 -3.9694 0.7695 29 1 -0.4850 0.8365 0.0778 30 1 0.3939 -0.3118 -2.0565 31 1 1.9445 -0.8562 -2.7402 32 1 2.0285 -2.0580 -4.7344 33 1 -0.7839 -2.6492 -8.3427 34 1 -3.1759 -2.2780 -8.7373 35 1 -4.6191 -1.3995 -6.9527 36 1 -3.6881 -0.8798 -4.7393 37 1 0.8551 -4.3506 -0.1495 38 1 0.6620 -2.1652 1.9198 39 1 -0.4223 -3.5632 1.6372 40 1 1.0740 -5.0889 2.7558 41 1 1.2461 -3.6124 3.7585 42 1 3.4576 -4.7281 2.6966 43 1 3.2706 -2.9485 2.6309 44 1 2.9725 -4.9873 0.4289 45 1 3.5104 -3.2871 0.3304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125240010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = -13.410803 kcal Electronic energy + Delta-G solvation = -30381.583437 eV Core-core repulsion = 26364.089557 eV Total energy + Delta-G solvation = -4017.493881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20792 -39.13513 -38.10953 -37.06613 -36.57382 -34.30001 -33.75393 -31.60488 -31.15223 -29.77247 -28.22516 -28.00015 -26.57807 -24.81825 -24.45263 -23.48114 -21.65976 -20.19229 -20.01840 -19.42759 -18.59632 -18.33508 -17.07727 -16.68305 -15.78258 -15.57833 -15.24664 -15.04622 -14.79996 -14.68263 -14.39152 -14.28952 -13.78397 -13.71247 -13.59172 -13.38206 -12.91522 -12.69861 -12.61522 -11.98305 -11.94965 -11.82102 -11.64911 -11.52343 -11.27440 -11.03462 -10.86626 -10.70400 -10.53550 -10.48674 -10.39506 -10.02119 -9.90507 -9.74838 -9.69878 -9.66310 -9.00850 -8.98205 -8.49618 -7.71421 -7.42944 -6.54052 -4.37680 0.80211 1.03871 2.52626 2.85985 2.99382 3.11407 3.13334 3.13965 3.80891 3.97901 4.24373 4.30224 4.56375 4.66154 4.68527 4.89768 4.98948 5.15483 5.31443 5.31622 5.33255 5.47078 5.51535 5.65102 5.78363 6.02402 6.03816 6.05998 6.19324 6.22535 6.26604 6.30040 6.31337 6.39348 6.45970 6.46819 6.49449 6.52812 6.64642 6.68124 6.85315 6.89705 7.04743 7.09618 7.24680 7.35036 7.86954 8.14847 8.24235 8.47973 8.74621 9.37728 9.83532 10.46732 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.003761 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.827449 B = 7442.462130 C = 8227.139813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.048 3.952 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.354 4.354 8 H 0.088 0.912 9 N -0.435 5.435 10 C 0.499 3.501 11 O -0.604 6.604 12 C 0.076 3.924 13 N -0.523 5.523 14 C 0.397 3.603 15 N -0.547 5.547 16 C 0.162 3.838 17 C -0.120 4.120 18 C -0.080 4.080 19 C -0.152 4.152 20 C -0.040 4.040 21 C -0.194 4.194 22 C 0.544 3.456 23 O -0.489 6.489 24 C 0.133 3.867 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.126 4.126 29 H 0.277 0.723 30 H 0.148 0.852 31 H 0.108 0.892 32 H 0.195 0.805 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 -1.356 -7.216 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.162 4.162 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.481 4.481 8 H 0.106 0.894 9 N -0.155 5.155 10 C 0.287 3.713 11 O -0.489 6.489 12 C -0.048 4.048 13 N -0.243 5.243 14 C 0.110 3.890 15 N -0.269 5.269 16 C 0.052 3.948 17 C -0.139 4.139 18 C -0.099 4.099 19 C -0.171 4.171 20 C -0.059 4.059 21 C -0.200 4.200 22 C 0.336 3.664 23 O -0.361 6.361 24 C 0.030 3.970 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.153 4.153 28 C -0.164 4.164 29 H 0.088 0.912 30 H 0.165 0.835 31 H 0.126 0.874 32 H 0.212 0.788 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.012 -1.737 -7.536 7.800 hybrid contribution -0.119 1.172 0.927 1.499 sum 0.893 -0.565 -6.609 6.693 Atomic orbital electron populations 1.69987 1.05993 1.28840 1.41721 1.25732 0.95103 1.00214 0.95116 0.86344 0.80158 0.81874 0.79039 1.19764 1.20658 1.18958 1.19193 0.97691 0.84012 1.47250 0.89399 1.43310 1.51307 1.10612 1.10263 1.20200 0.80623 0.87793 0.82676 1.90558 1.49407 1.34547 1.74407 1.22271 0.99538 1.01316 0.81649 1.46427 1.10010 1.54274 1.13564 1.24693 0.98194 0.84299 0.81790 1.68677 1.12508 1.26586 1.19129 1.18862 0.88760 0.93748 0.93462 1.20769 0.95060 1.02653 0.95468 1.21188 0.93249 0.96497 0.99014 1.21073 1.00140 1.02673 0.93175 1.21010 0.93083 0.94766 0.97043 1.20697 0.96365 1.08945 0.94039 1.18350 0.81183 0.78548 0.88286 1.90920 1.60950 1.42824 1.41362 1.21606 0.94314 0.89499 0.91627 1.22587 0.97416 1.02175 0.93661 1.22455 0.95743 0.99401 0.98499 1.22250 0.96425 1.00833 0.95839 1.22385 0.98329 1.00140 0.95553 0.91211 0.83518 0.87416 0.78837 0.84740 0.85403 0.85457 0.84775 0.90532 0.88966 0.93147 0.92592 0.92381 0.92963 0.91606 0.92934 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.99 11.70 55.50 0.65 -20.34 16 2 C 0.05 1.09 3.46 -17.47 -0.06 1.03 16 3 Si 0.90 17.72 29.61 -169.99 -5.03 12.69 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.35 -7.99 6.91 -14.93 -0.10 -8.09 16 8 H 0.09 1.93 7.18 -52.49 -0.38 1.55 16 9 N -0.44 -10.08 2.35 -106.55 -0.25 -10.33 16 10 C 0.50 12.11 7.26 -10.99 -0.08 12.03 16 11 O -0.60 -16.21 15.78 5.54 0.09 -16.12 16 12 C 0.08 1.64 4.27 -5.20 -0.02 1.62 16 13 N -0.52 -10.60 2.09 -120.15 -0.25 -10.85 16 14 C 0.40 6.71 11.40 -90.18 -1.03 5.68 16 15 N -0.55 -9.32 10.37 -12.01 -0.12 -9.44 16 16 C 0.16 2.78 6.63 -84.51 -0.56 2.22 16 17 C -0.12 -1.65 10.03 -39.26 -0.39 -2.04 16 18 C -0.08 -0.94 10.00 -39.55 -0.40 -1.33 16 19 C -0.15 -1.91 10.02 -39.52 -0.40 -2.31 16 20 C -0.04 -0.64 9.68 -39.35 -0.38 -1.02 16 21 C -0.19 -3.66 5.89 -104.78 -0.62 -4.28 16 22 C 0.54 11.98 7.66 -12.43 -0.10 11.89 16 23 O -0.49 -12.30 16.32 5.17 0.08 -12.22 16 24 C 0.13 2.83 3.29 -66.81 -0.22 2.61 16 25 C -0.12 -2.44 6.42 -25.03 -0.16 -2.60 16 26 C -0.12 -1.98 6.91 -24.69 -0.17 -2.15 16 27 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 28 C -0.13 -2.22 6.25 -25.61 -0.16 -2.38 16 29 H 0.28 6.82 8.32 -40.82 -0.34 6.48 16 30 H 0.15 3.53 4.41 -51.93 -0.23 3.30 16 31 H 0.11 1.93 7.94 -51.93 -0.41 1.52 16 32 H 0.20 2.46 7.98 -52.49 -0.42 2.04 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.13 2.13 7.83 -52.49 -0.41 1.72 16 37 H 0.08 1.76 6.94 -51.93 -0.36 1.40 16 38 H 0.09 2.11 7.09 -51.93 -0.37 1.74 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.31 6.83 -51.93 -0.35 0.96 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -30.78 370.04 -10.15 -40.94 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.87 Total: 11.20 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -5.02 Total: 8.90 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.02 Total: -50.97 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: 0.17 Total: -28.34 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.78 -10.15 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125240010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.525 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds