Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99654 * 2 1 4 4 H 1.48501 * 109.46869 * 239.99406 * 3 2 1 5 5 H 1.48505 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47448 * 119.99865 * 3 2 1 7 7 C 1.37868 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99786 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00533 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47128 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47281 * 179.97438 * 11 10 9 13 13 C 1.33791 * 124.17500 * 89.97196 * 12 11 10 14 14 O 1.21543 * 123.77173 * 0.04012 * 13 12 11 15 15 N 1.34525 * 112.45685 * 180.30649 * 13 12 11 16 16 C 1.47309 * 106.61823 * 359.58762 * 15 13 12 17 17 H 1.09004 * 110.39878 * 118.80883 * 16 15 13 18 18 C 1.52995 * 110.80171 * 241.75848 * 16 15 13 19 19 C 1.50703 * 109.47279 * 289.28939 * 18 16 15 20 20 C 1.34237 * 126.49895 * 264.69115 * 19 18 16 21 21 N 1.36843 * 109.92385 * 179.83151 * 20 19 18 22 22 H 0.96997 * 125.05595 * 180.18067 * 21 20 19 23 23 C 1.37682 * 109.87504 * 0.44014 * 21 20 19 24 24 C 1.39125 * 133.50898 * 179.71305 * 23 21 20 25 25 C 1.37742 * 119.77935 * 180.02562 * 24 23 21 26 26 C 1.38829 * 120.67108 * 0.02562 * 25 24 23 27 27 C 1.36629 * 120.52345 * 359.97438 * 26 25 24 28 28 C 1.39630 * 119.76496 * 0.02562 * 27 26 25 29 29 C 1.34766 * 124.17749 * 270.01885 * 12 11 10 30 30 O 1.21226 * 127.15922 * 359.92209 * 29 12 11 31 31 H 0.97003 * 120.00691 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47412 * 59.99570 * 9 7 2 33 33 H 1.09005 * 109.46990 * 299.99563 * 9 7 2 34 34 H 1.08999 * 109.47193 * 59.99473 * 10 9 7 35 35 H 1.09005 * 109.46756 * 299.99742 * 10 9 7 36 36 H 1.08999 * 109.47353 * 59.99767 * 11 10 9 37 37 H 1.09005 * 109.47252 * 299.99635 * 11 10 9 38 38 H 0.97005 * 126.69176 * 179.70286 * 15 13 12 39 39 H 1.08997 * 109.47013 * 49.29127 * 18 16 15 40 40 H 1.08998 * 109.47626 * 169.28877 * 18 16 15 41 41 H 1.07997 * 125.03912 * 359.97286 * 20 19 18 42 42 H 1.08000 * 120.10695 * 0.02562 * 24 23 21 43 43 H 1.08006 * 119.66477 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.74211 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.11286 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 2.9220 -6.6714 1.1071 14 8 2.6261 -6.3246 2.2338 15 7 3.7827 -7.6684 0.8334 16 6 3.8589 -7.7680 -0.6344 17 1 4.8767 -7.5788 -0.9757 18 6 3.3756 -9.1388 -1.1118 19 6 4.3851 -10.1895 -0.7267 20 6 5.3717 -10.6702 -1.4998 21 7 6.0891 -11.6093 -0.8099 22 1 6.8525 -12.0948 -1.1597 23 6 5.5623 -11.7666 0.4524 24 6 5.8949 -12.5743 1.5352 25 6 5.1562 -12.5012 2.6955 26 6 4.0807 -11.6292 2.7966 27 6 3.7366 -10.8269 1.7455 28 6 4.4718 -10.8846 0.5598 29 6 2.9238 -6.6759 -1.1147 30 8 2.6702 -6.3817 -2.2630 31 1 -0.4851 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 2.8720 -3.6042 0.8905 35 1 2.8719 -3.6042 -0.8895 36 1 0.8534 -5.0451 -0.8885 37 1 0.8540 -5.0446 0.8915 38 1 4.2589 -8.2161 1.4770 39 1 2.4170 -9.3683 -0.6466 40 1 3.2598 -9.1262 -2.1955 41 1 5.5711 -10.3599 -2.5148 42 1 6.7295 -13.2562 1.4663 43 1 5.4162 -13.1288 3.5352 44 1 3.5120 -11.5838 3.7136 45 1 2.8990 -10.1506 1.8315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272461909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = 1.865165 kcal Electronic energy + Delta-G solvation = -28651.630989 eV Core-core repulsion = 24634.799524 eV Total energy + Delta-G solvation = -4016.831465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35385 -41.56600 -38.42764 -37.30779 -36.37854 -35.61660 -33.79566 -32.88403 -31.25641 -30.81243 -29.67613 -28.33535 -27.18657 -24.90255 -23.61211 -23.21543 -22.35292 -22.10621 -20.69176 -20.11779 -19.57889 -18.26102 -17.95667 -16.95861 -16.64709 -16.38132 -16.09893 -15.80100 -15.41069 -15.10337 -14.90687 -14.50071 -14.42246 -14.28132 -14.16240 -13.96351 -13.89591 -13.43163 -13.25911 -12.80702 -12.42377 -12.27744 -12.07856 -12.02632 -11.68578 -11.44563 -11.19734 -10.97664 -10.81424 -10.78613 -10.50571 -10.16792 -9.97945 -9.75143 -9.71320 -9.49046 -9.25774 -8.96244 -8.59239 -8.31042 -8.03840 -5.96235 -3.98366 0.75432 1.27605 1.70013 2.22127 2.43047 2.71273 3.17176 3.20071 3.37273 3.40966 3.44063 3.56299 3.97775 4.32889 4.39463 4.49863 4.57972 4.62380 4.75931 4.79356 4.92400 5.01569 5.20349 5.25085 5.35718 5.39667 5.43669 5.50939 5.61863 5.72119 5.78234 5.80315 5.84377 6.06766 6.13552 6.27207 6.33196 6.38635 6.57432 6.78811 6.79747 6.81355 7.05792 7.09864 7.25361 7.50637 7.68160 7.82090 8.02268 8.26953 8.45145 9.07141 9.65160 11.15148 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002142 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.579506 B =13067.056504 C =13590.041188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.571 5.571 13 C 0.699 3.301 14 O -0.539 6.539 15 N -0.725 5.725 16 C 0.099 3.901 17 H 0.124 0.876 18 C -0.041 4.041 19 C -0.174 4.174 20 C 0.063 3.937 21 N -0.595 5.595 22 H 0.416 0.584 23 C 0.094 3.906 24 C -0.131 4.131 25 C -0.098 4.098 26 C -0.143 4.143 27 C -0.074 4.074 28 C -0.100 4.100 29 C 0.522 3.478 30 O -0.466 6.466 31 H 0.261 0.739 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.436 0.564 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.174 0.826 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.643 -30.686 -1.035 33.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.162 4.162 11 C -0.004 4.004 12 N -0.316 5.316 13 C 0.400 3.600 14 O -0.412 6.412 15 N -0.391 5.391 16 C -0.011 4.011 17 H 0.141 0.859 18 C -0.080 4.080 19 C -0.182 4.182 20 C -0.063 4.063 21 N -0.197 5.197 22 H 0.253 0.747 23 C -0.012 4.012 24 C -0.151 4.151 25 C -0.117 4.117 26 C -0.162 4.162 27 C -0.093 4.093 28 C -0.104 4.104 29 C 0.309 3.691 30 O -0.336 6.336 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.281 0.719 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.191 0.809 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.194 -30.160 -1.147 32.552 hybrid contribution 1.171 0.439 0.101 1.255 sum 13.366 -29.721 -1.047 32.604 Atomic orbital electron populations 1.69949 1.06005 1.26727 1.50740 1.25009 0.94876 0.99232 0.95318 0.86638 0.79566 0.83075 0.78598 1.20269 1.21276 1.20245 1.21150 0.92970 0.90915 1.50730 0.92784 1.19026 0.93793 0.90822 0.97559 1.22002 0.99938 0.93120 1.01092 1.22088 0.90285 0.83813 1.04234 1.46620 1.43481 1.34047 1.07441 1.15960 0.79476 0.80023 0.84548 1.91022 1.63247 1.66440 1.20474 1.45633 1.48364 1.37812 1.07253 1.22119 1.01446 0.95534 0.81980 0.85884 1.20051 0.97200 0.88400 1.02364 1.19978 1.01115 1.03430 0.93637 1.21705 0.93772 0.92858 0.97997 1.41747 1.29642 1.36926 1.11382 0.74688 1.18258 0.96322 0.99901 0.86759 1.20032 1.02144 1.00981 0.91986 1.20840 0.95365 0.98780 0.96741 1.20704 0.98575 0.97776 0.99115 1.20372 0.98743 0.98758 0.91397 1.19063 0.97439 0.99265 0.94673 1.20782 0.80630 0.82570 0.85161 1.90805 1.59652 1.65165 1.17952 0.92930 0.96234 0.96144 0.92608 0.92887 0.89086 0.88881 0.71924 0.89813 0.88407 0.80929 0.86370 0.85773 0.85859 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.12 -2.66 5.48 -26.73 -0.15 -2.81 16 11 C 0.12 2.08 5.70 -4.04 -0.02 2.06 16 12 N -0.57 -8.93 2.60 -120.73 -0.31 -9.25 16 13 C 0.70 10.69 8.62 -88.02 -0.76 9.93 16 14 O -0.54 -10.25 17.48 5.33 0.09 -10.15 16 15 N -0.73 -7.92 6.14 -59.19 -0.36 -8.29 16 16 C 0.10 0.95 3.62 -68.21 -0.25 0.70 16 17 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.04 -0.32 5.50 -27.88 -0.15 -0.47 16 19 C -0.17 -1.30 5.47 -102.71 -0.56 -1.86 16 20 C 0.06 0.35 11.73 -16.73 -0.20 0.16 16 21 N -0.59 -3.21 6.07 -10.65 -0.06 -3.28 16 22 H 0.42 1.06 8.96 -40.82 -0.37 0.70 16 23 C 0.09 0.73 7.28 -83.99 -0.61 0.12 16 24 C -0.13 -0.90 10.08 -39.43 -0.40 -1.30 16 25 C -0.10 -0.68 10.01 -39.54 -0.40 -1.08 16 26 C -0.14 -1.11 9.97 -39.94 -0.40 -1.51 16 27 C -0.07 -0.64 9.12 -39.64 -0.36 -1.00 16 28 C -0.10 -0.86 6.13 -105.14 -0.64 -1.50 16 29 C 0.52 7.20 7.65 -10.55 -0.08 7.12 16 30 O -0.47 -7.59 17.76 5.60 0.10 -7.49 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.58 8.00 -51.93 -0.42 1.16 16 37 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 38 H 0.44 4.22 7.76 -40.82 -0.32 3.90 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.12 1.05 8.05 -52.49 -0.42 0.63 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -35.90 386.02 -10.66 -46.56 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.12 Total: 0.24 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -5.53 Total: -4.76 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.01 Total: -47.36 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.19 Total: -17.64 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.90 -10.66 -46.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272461909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.427 kcal (2) G-P(sol) polarization free energy of solvation -35.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds