Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99654 * 2 1 4 4 H 1.48501 * 109.46869 * 239.99406 * 3 2 1 5 5 H 1.48505 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47448 * 119.99865 * 3 2 1 7 7 C 1.37868 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99786 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00533 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47128 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47281 * 179.97438 * 11 10 9 13 13 C 1.33791 * 124.17500 * 89.97196 * 12 11 10 14 14 O 1.21543 * 123.77173 * 0.04012 * 13 12 11 15 15 N 1.34525 * 112.45685 * 180.30649 * 13 12 11 16 16 C 1.47309 * 106.61823 * 359.58762 * 15 13 12 17 17 H 1.09004 * 110.39878 * 118.80883 * 16 15 13 18 18 C 1.52995 * 110.80171 * 241.75848 * 16 15 13 19 19 C 1.50703 * 109.47279 * 289.28939 * 18 16 15 20 20 C 1.34237 * 126.49895 * 264.69115 * 19 18 16 21 21 N 1.36843 * 109.92385 * 179.83151 * 20 19 18 22 22 H 0.96997 * 125.05595 * 180.18067 * 21 20 19 23 23 C 1.37682 * 109.87504 * 0.44014 * 21 20 19 24 24 C 1.39125 * 133.50898 * 179.71305 * 23 21 20 25 25 C 1.37742 * 119.77935 * 180.02562 * 24 23 21 26 26 C 1.38829 * 120.67108 * 0.02562 * 25 24 23 27 27 C 1.36629 * 120.52345 * 359.97438 * 26 25 24 28 28 C 1.39630 * 119.76496 * 0.02562 * 27 26 25 29 29 C 1.34766 * 124.17749 * 270.01885 * 12 11 10 30 30 O 1.21226 * 127.15922 * 359.92209 * 29 12 11 31 31 H 0.97003 * 120.00691 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47412 * 59.99570 * 9 7 2 33 33 H 1.09005 * 109.46990 * 299.99563 * 9 7 2 34 34 H 1.08999 * 109.47193 * 59.99473 * 10 9 7 35 35 H 1.09005 * 109.46756 * 299.99742 * 10 9 7 36 36 H 1.08999 * 109.47353 * 59.99767 * 11 10 9 37 37 H 1.09005 * 109.47252 * 299.99635 * 11 10 9 38 38 H 0.97005 * 126.69176 * 179.70286 * 15 13 12 39 39 H 1.08997 * 109.47013 * 49.29127 * 18 16 15 40 40 H 1.08998 * 109.47626 * 169.28877 * 18 16 15 41 41 H 1.07997 * 125.03912 * 359.97286 * 20 19 18 42 42 H 1.08000 * 120.10695 * 0.02562 * 24 23 21 43 43 H 1.08006 * 119.66477 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.74211 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.11286 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 2.9220 -6.6714 1.1071 14 8 2.6261 -6.3246 2.2338 15 7 3.7827 -7.6684 0.8334 16 6 3.8589 -7.7680 -0.6344 17 1 4.8767 -7.5788 -0.9757 18 6 3.3756 -9.1388 -1.1118 19 6 4.3851 -10.1895 -0.7267 20 6 5.3717 -10.6702 -1.4998 21 7 6.0891 -11.6093 -0.8099 22 1 6.8525 -12.0948 -1.1597 23 6 5.5623 -11.7666 0.4524 24 6 5.8949 -12.5743 1.5352 25 6 5.1562 -12.5012 2.6955 26 6 4.0807 -11.6292 2.7966 27 6 3.7366 -10.8269 1.7455 28 6 4.4718 -10.8846 0.5598 29 6 2.9238 -6.6759 -1.1147 30 8 2.6702 -6.3817 -2.2630 31 1 -0.4851 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 2.8720 -3.6042 0.8905 35 1 2.8719 -3.6042 -0.8895 36 1 0.8534 -5.0451 -0.8885 37 1 0.8540 -5.0446 0.8915 38 1 4.2589 -8.2161 1.4770 39 1 2.4170 -9.3683 -0.6466 40 1 3.2598 -9.1262 -2.1955 41 1 5.5711 -10.3599 -2.5148 42 1 6.7295 -13.2562 1.4663 43 1 5.4162 -13.1288 3.5352 44 1 3.5120 -11.5838 3.7136 45 1 2.8990 -10.1506 1.8315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272461909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = -21.035903 kcal Electronic energy + Delta-G solvation = -28652.624054 eV Core-core repulsion = 24634.799524 eV Total energy + Delta-G solvation = -4017.824530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.47017 -42.09521 -39.66280 -37.84228 -37.46737 -37.08986 -35.47126 -34.00085 -32.94034 -31.46824 -30.18565 -29.21157 -28.78736 -26.07535 -25.23385 -23.74959 -23.43444 -22.64045 -22.44372 -21.37316 -20.23471 -19.13021 -18.76876 -18.45979 -17.98195 -17.36265 -17.20500 -16.64442 -16.47126 -16.30502 -16.26629 -15.71270 -15.57275 -15.28810 -15.19193 -14.92396 -14.64835 -14.52970 -14.19743 -13.93834 -13.74569 -13.41107 -13.31409 -12.89917 -12.84582 -12.68279 -12.57492 -12.54068 -12.26352 -12.07843 -11.69203 -11.67668 -11.55911 -11.38962 -11.23129 -10.78086 -10.59254 -10.56040 -10.34833 -9.10548 -8.53887 -8.20737 -6.32000 0.23886 0.58047 0.73951 1.18661 1.39437 1.42971 1.50909 1.75358 1.95944 2.20315 2.32789 2.40994 2.97049 3.01387 3.12176 3.71575 3.84263 3.89758 3.97201 4.11012 4.15301 4.16865 4.27690 4.32378 4.44563 4.45439 4.49783 4.51050 4.69369 4.81797 4.87100 4.93494 4.99479 5.02507 5.08326 5.08629 5.27933 5.45999 5.61706 5.65706 5.75259 5.78271 5.80575 5.81230 5.86129 6.08750 6.21250 6.28266 6.37947 6.76788 6.82235 7.09366 7.36527 8.90890 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.002142 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.579506 B =13067.056504 C =13590.041188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.105 4.105 11 C 0.125 3.875 12 N -0.578 5.578 13 C 0.698 3.302 14 O -0.583 6.583 15 N -0.702 5.702 16 C 0.113 3.887 17 H 0.155 0.845 18 C -0.030 4.030 19 C -0.201 4.201 20 C 0.084 3.916 21 N -0.584 5.584 22 H 0.431 0.569 23 C 0.077 3.923 24 C -0.132 4.132 25 C -0.109 4.109 26 C -0.153 4.153 27 C -0.094 4.094 28 C -0.116 4.116 29 C 0.521 3.479 30 O -0.490 6.490 31 H 0.265 0.735 32 H 0.002 0.998 33 H -0.002 1.002 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.445 0.555 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.208 0.792 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.129 0.871 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.268 -32.023 -2.264 35.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.143 4.143 11 C 0.004 3.996 12 N -0.322 5.322 13 C 0.398 3.602 14 O -0.459 6.459 15 N -0.367 5.367 16 C 0.004 3.996 17 H 0.172 0.828 18 C -0.068 4.068 19 C -0.208 4.208 20 C -0.043 4.043 21 N -0.188 5.188 22 H 0.271 0.729 23 C -0.030 4.030 24 C -0.152 4.152 25 C -0.128 4.128 26 C -0.172 4.172 27 C -0.113 4.113 28 C -0.121 4.121 29 C 0.309 3.691 30 O -0.361 6.361 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.016 0.984 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.291 0.709 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.225 0.775 42 H 0.157 0.843 43 H 0.161 0.839 44 H 0.147 0.853 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.875 -31.568 -2.398 34.979 hybrid contribution 0.366 0.761 0.451 0.957 sum 15.241 -30.807 -1.947 34.426 Atomic orbital electron populations 1.70077 1.07668 1.27950 1.51263 1.25971 0.95859 1.03326 0.94599 0.85486 0.78306 0.78043 0.79126 1.19108 1.20515 1.19374 1.21580 0.93382 0.92355 1.51118 0.92566 1.18897 0.94141 0.92263 0.95529 1.21694 0.98760 0.93442 1.00427 1.21707 0.90304 0.83197 1.04371 1.46569 1.43460 1.33630 1.08587 1.16047 0.79823 0.80599 0.83698 1.90991 1.64919 1.67995 1.22006 1.45538 1.46638 1.36137 1.08387 1.22325 1.01711 0.95074 0.80441 0.82783 1.19954 0.96840 0.86919 1.03136 1.19916 1.02460 1.04585 0.93851 1.22231 0.92141 0.91180 0.98797 1.41803 1.29775 1.36645 1.10539 0.72935 1.18454 0.96534 1.00150 0.87858 1.20336 1.02420 1.00819 0.91618 1.21104 0.95133 0.98910 0.97652 1.20908 0.99095 0.97933 0.99242 1.20399 0.99141 0.99519 0.92260 1.19293 0.97853 0.99930 0.95037 1.21439 0.80488 0.82864 0.84279 1.90794 1.60571 1.66065 1.18719 0.92628 0.97977 0.98394 0.93571 0.92963 0.88458 0.89345 0.70861 0.90904 0.86683 0.77534 0.84258 0.83918 0.85322 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.44 0.28 -57.37 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.55 -32.37 9.11 25.60 0.23 -32.13 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.61 4.97 29.85 0.15 1.76 16 10 C -0.10 -4.66 5.48 30.59 0.17 -4.49 16 11 C 0.13 4.65 5.70 86.38 0.49 5.14 16 12 N -0.58 -18.15 2.60 -773.12 -2.01 -20.16 16 13 C 0.70 21.47 8.62 179.44 1.55 23.02 16 14 O -0.58 -22.82 17.48 -3.85 -0.07 -22.89 16 15 N -0.70 -14.71 6.14 -459.61 -2.82 -17.53 16 16 C 0.11 1.93 3.62 44.37 0.16 2.09 16 17 H 0.16 1.86 8.14 -2.38 -0.02 1.84 16 18 C -0.03 -0.39 5.50 29.85 0.16 -0.23 16 19 C -0.20 -2.49 5.47 -18.63 -0.10 -2.59 16 20 C 0.08 0.62 11.73 83.00 0.97 1.59 16 21 N -0.58 -4.38 6.07 -187.61 -1.14 -5.52 16 22 H 0.43 0.64 8.96 -92.71 -0.83 -0.19 16 23 C 0.08 1.03 7.28 39.03 0.28 1.31 16 24 C -0.13 -1.56 10.08 22.37 0.23 -1.34 16 25 C -0.11 -1.38 10.01 22.29 0.22 -1.16 16 26 C -0.15 -2.35 9.97 22.03 0.22 -2.13 16 27 C -0.09 -1.63 9.12 22.23 0.20 -1.42 16 28 C -0.12 -1.85 6.13 -20.20 -0.12 -1.97 16 29 C 0.52 13.84 7.65 87.94 0.67 14.51 16 30 O -0.49 -15.48 17.76 -2.86 -0.05 -15.53 16 31 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.10 3.47 8.00 -2.39 -0.02 3.45 16 37 H 0.09 3.35 7.86 -2.38 -0.02 3.33 16 38 H 0.44 8.24 7.76 -92.70 -0.72 7.52 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.21 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 44 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.11 2.04 8.05 -2.91 -0.02 2.02 16 Total: -1.00 -79.45 386.02 1.66 -77.80 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -0.51 Total: 11.23 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 5.95 Total: 2.45 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -5.69 Total: -100.58 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.12 Total: -38.42 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.45 1.66 -77.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272461909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.763 kcal (2) G-P(sol) polarization free energy of solvation -79.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds