Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34773 * 120.59567 * 124.66310 * 12 11 10 14 14 O 1.21285 * 119.99778 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00178 * 359.97438 * 13 12 11 16 16 N 1.46498 * 109.47456 * 179.97438 * 15 13 12 17 17 C 1.34672 * 124.64577 * 264.69782 * 16 15 13 18 18 C 1.37859 * 109.62023 * 179.82385 * 17 16 15 19 19 C 1.41722 * 126.91360 * 180.14874 * 18 17 16 20 20 O 1.21407 * 120.00297 * 180.32645 * 19 18 17 21 21 C 1.47626 * 106.17757 * 0.41561 * 18 17 16 22 22 C 1.39185 * 133.99513 * 179.72280 * 21 18 17 23 23 C 1.37793 * 119.67473 * 180.02562 * 22 21 18 24 24 C 1.38722 * 120.26919 * 359.97438 * 23 22 21 25 25 C 1.37777 * 120.63876 * 0.02562 * 24 23 22 26 26 C 1.38021 * 124.64486 * 84.99425 * 16 15 13 27 27 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 28 28 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 29 29 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 31 31 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 32 32 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 33 33 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 34 34 H 1.09004 * 109.47017 * 299.99296 * 15 13 12 35 35 H 1.08994 * 109.47557 * 59.99376 * 15 13 12 36 36 H 1.08001 * 125.18511 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.00104 * 0.32392 * 19 18 17 38 38 H 1.08007 * 120.16156 * 0.05573 * 22 21 18 39 39 H 1.08001 * 119.87035 * 180.02562 * 23 22 21 40 40 H 1.07996 * 119.68425 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.03044 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.61476 * 295.47839 * 27 12 11 43 43 H 1.09010 * 109.61052 * 174.96625 * 27 12 11 44 44 H 1.09003 * 109.61422 * 354.94072 * 28 9 7 45 45 H 1.08999 * 109.61487 * 115.28316 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3442 -5.7197 2.2441 14 8 -0.5927 -5.6869 3.0136 15 6 0.8051 -7.0362 1.6738 16 7 -0.0333 -8.1165 2.1995 17 6 0.2759 -8.8742 3.2690 18 6 -0.7289 -9.7911 3.4927 19 6 -0.7801 -10.7636 4.5224 20 8 -1.7292 -11.5167 4.5996 21 6 -1.7379 -9.5607 2.4400 22 6 -2.9578 -10.1517 2.1241 23 6 -3.6798 -9.6910 1.0446 24 6 -3.1955 -8.6432 0.2753 25 6 -1.9894 -8.0494 0.5772 26 6 -1.2454 -8.5009 1.6629 27 6 0.5344 -3.2876 2.4474 28 6 0.2343 -2.3368 1.2819 29 1 -0.4850 0.8401 -0.0004 30 1 1.0134 -4.0707 -0.8208 31 1 2.7052 -3.5085 -0.8012 32 1 3.0125 -4.2759 1.4845 33 1 2.2517 -5.6159 0.5906 34 1 0.7246 -7.0095 0.5871 35 1 1.8429 -7.2115 1.9570 36 1 1.1730 -8.7767 3.8624 37 1 0.0252 -10.8347 5.2386 38 1 -3.3369 -10.9670 2.7225 39 1 -4.6269 -10.1471 0.7969 40 1 -3.7693 -8.2894 -0.5684 41 1 -1.6219 -7.2340 -0.0281 42 1 1.3246 -2.8665 3.0689 43 1 -0.3666 -3.4306 3.0440 44 1 0.0946 -1.3248 1.6621 45 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283218097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 35.043863 kcal Electronic energy + Delta-G solvation = -29299.815083 eV Core-core repulsion = 25284.422354 eV Total energy + Delta-G solvation = -4015.392729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82550 -39.78032 -38.49557 -37.35660 -36.81851 -34.14748 -33.21353 -31.36631 -30.95783 -30.20597 -29.41530 -28.14547 -26.79660 -24.14480 -23.74720 -23.14127 -22.72186 -21.65883 -20.59796 -19.84488 -18.92004 -17.70224 -17.32840 -16.94814 -16.43715 -15.82054 -15.66103 -15.43519 -15.14487 -14.93823 -14.72175 -14.47305 -13.98323 -13.88301 -13.77493 -13.75107 -13.66003 -13.43783 -13.12723 -12.97429 -12.70887 -12.25188 -11.95525 -11.73255 -11.70501 -11.36393 -11.07643 -10.96390 -10.89147 -10.73645 -10.41217 -10.12293 -10.04326 -9.87962 -9.70486 -9.55028 -8.73920 -8.48542 -8.37203 -7.83044 -6.87088 -5.97175 -3.43680 0.73348 1.42959 1.69603 2.29874 2.55505 3.07541 3.26309 3.26926 3.34246 3.34452 3.89635 4.27884 4.31355 4.34521 4.37415 4.43466 4.60644 4.70191 4.99221 5.01921 5.06241 5.12756 5.20291 5.44275 5.49103 5.50771 5.52663 5.58611 5.63911 5.79446 5.92164 6.04028 6.12290 6.17586 6.30020 6.33343 6.47285 6.48386 6.57301 6.59343 6.61417 6.86955 7.03618 7.07314 7.39170 7.56928 7.61268 7.62852 8.18917 8.23068 8.98600 9.61159 10.16809 11.10363 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.002493 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.276643 B =11227.748919 C =11785.281251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.130 3.870 11 C 0.085 3.915 12 N -0.590 5.590 13 C 0.488 3.512 14 O -0.533 6.533 15 C 0.082 3.918 16 N -0.440 5.440 17 C 0.152 3.848 18 C -0.299 4.299 19 C 0.408 3.592 20 O -0.487 6.487 21 C -0.057 4.057 22 C -0.075 4.075 23 C -0.135 4.135 24 C -0.105 4.105 25 C -0.113 4.113 26 C 0.089 3.911 27 C 0.088 3.912 28 C 0.158 3.842 29 H 0.258 0.742 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.183 0.817 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -17.677 2.959 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.040 4.040 12 N -0.323 5.323 13 C 0.273 3.727 14 O -0.411 6.411 15 C -0.044 4.044 16 N -0.118 5.118 17 C 0.017 3.983 18 C -0.307 4.307 19 C 0.271 3.729 20 O -0.363 6.363 21 C -0.060 4.060 22 C -0.094 4.094 23 C -0.154 4.154 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.013 4.013 27 C -0.035 4.035 28 C 0.032 3.968 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.200 0.800 37 H 0.107 0.893 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.200 -17.604 3.242 18.035 hybrid contribution 0.716 1.318 -0.184 1.511 sum 2.916 -16.287 3.058 16.826 Atomic orbital electron populations 1.70005 1.05371 1.26098 1.52811 1.25109 0.95305 0.98704 1.00224 0.86324 0.78925 0.83006 0.78218 1.20750 1.21513 1.20863 1.19128 0.92731 0.84581 1.42799 0.91414 1.44002 1.36516 1.01590 1.49149 1.21353 0.98629 0.87514 0.92227 1.22567 0.88555 1.00197 0.92699 1.48090 1.32391 1.06772 1.45077 1.20578 0.83919 0.85481 0.82760 1.90762 1.28101 1.86342 1.35855 1.21892 0.95614 0.85283 1.01568 1.43158 1.16988 1.27033 1.24620 1.22512 0.98690 0.89562 0.87543 1.20379 0.98332 1.07136 1.04899 1.21621 0.88046 0.79544 0.83671 1.90516 1.34794 1.39241 1.71787 1.18856 0.95282 0.96549 0.95290 1.20592 0.92606 0.99444 0.96748 1.20990 1.00234 0.98051 0.96149 1.20814 0.95076 0.96481 1.00043 1.20098 0.95424 1.01222 0.96534 1.18225 0.87242 0.97880 0.97962 1.22575 0.99986 0.82322 0.98634 1.21197 0.89033 0.98658 0.87906 0.93237 0.95830 0.91207 0.90963 0.91263 0.86138 0.85851 0.80048 0.89310 0.85235 0.85816 0.85533 0.86243 0.91836 0.90057 0.88091 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 11.20 55.49 0.62 -24.14 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 3 Si 0.91 20.40 29.59 -169.99 -5.03 15.37 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.60 9.57 -15.06 -0.14 -6.75 16 8 H 0.07 1.65 7.89 -52.48 -0.41 1.23 16 9 N -0.59 -13.30 2.96 -171.77 -0.51 -13.81 16 10 C 0.13 2.27 6.70 -3.37 -0.02 2.24 16 11 C 0.08 1.11 6.52 -3.37 -0.02 1.09 16 12 N -0.59 -9.13 2.95 -172.22 -0.51 -9.64 16 13 C 0.49 7.20 7.77 -10.99 -0.09 7.11 16 14 O -0.53 -10.14 15.82 5.55 0.09 -10.05 16 15 C 0.08 0.81 4.75 -5.20 -0.02 0.78 16 16 N -0.44 -5.13 2.21 -115.29 -0.25 -5.38 16 17 C 0.15 1.50 11.22 -16.44 -0.18 1.32 16 18 C -0.30 -3.62 6.13 -104.87 -0.64 -4.26 16 19 C 0.41 4.52 11.44 32.06 0.37 4.88 16 20 O -0.49 -7.24 16.81 5.45 0.09 -7.15 16 21 C -0.06 -0.81 6.24 -104.92 -0.65 -1.46 16 22 C -0.08 -1.02 9.80 -39.39 -0.39 -1.41 16 23 C -0.14 -1.61 10.03 -39.57 -0.40 -2.01 16 24 C -0.10 -1.25 10.01 -39.57 -0.40 -1.65 16 25 C -0.11 -1.49 9.96 -39.41 -0.39 -1.88 16 26 C 0.09 1.23 6.77 -83.95 -0.57 0.66 16 27 C 0.09 1.62 6.59 -3.60 -0.02 1.59 16 28 C 0.16 3.53 5.51 -3.59 -0.02 3.51 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.61 5.91 -51.93 -0.31 0.30 16 34 H 0.12 1.02 7.72 -51.93 -0.40 0.62 16 35 H 0.12 0.75 7.87 -51.93 -0.41 0.34 16 36 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.09 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.13 1.73 7.38 -52.48 -0.39 1.34 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.54 6.99 -51.92 -0.36 1.18 16 44 H 0.10 2.53 6.00 -51.93 -0.31 2.21 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -34.65 375.64 -9.47 -44.11 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.94 Total: 1.18 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -3.68 Total: 3.85 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.65 Total: -52.98 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.18 Total: -17.20 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.65 -9.47 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283218097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.155 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds