Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34773 * 120.59567 * 124.66310 * 12 11 10 14 14 O 1.21285 * 119.99778 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00178 * 359.97438 * 13 12 11 16 16 N 1.46498 * 109.47456 * 179.97438 * 15 13 12 17 17 C 1.34672 * 124.64577 * 264.69782 * 16 15 13 18 18 C 1.37859 * 109.62023 * 179.82385 * 17 16 15 19 19 C 1.41722 * 126.91360 * 180.14874 * 18 17 16 20 20 O 1.21407 * 120.00297 * 180.32645 * 19 18 17 21 21 C 1.47626 * 106.17757 * 0.41561 * 18 17 16 22 22 C 1.39185 * 133.99513 * 179.72280 * 21 18 17 23 23 C 1.37793 * 119.67473 * 180.02562 * 22 21 18 24 24 C 1.38722 * 120.26919 * 359.97438 * 23 22 21 25 25 C 1.37777 * 120.63876 * 0.02562 * 24 23 22 26 26 C 1.38021 * 124.64486 * 84.99425 * 16 15 13 27 27 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 28 28 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 29 29 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 31 31 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 32 32 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 33 33 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 34 34 H 1.09004 * 109.47017 * 299.99296 * 15 13 12 35 35 H 1.08994 * 109.47557 * 59.99376 * 15 13 12 36 36 H 1.08001 * 125.18511 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.00104 * 0.32392 * 19 18 17 38 38 H 1.08007 * 120.16156 * 0.05573 * 22 21 18 39 39 H 1.08001 * 119.87035 * 180.02562 * 23 22 21 40 40 H 1.07996 * 119.68425 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.03044 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.61476 * 295.47839 * 27 12 11 43 43 H 1.09010 * 109.61052 * 174.96625 * 27 12 11 44 44 H 1.09003 * 109.61422 * 354.94072 * 28 9 7 45 45 H 1.08999 * 109.61487 * 115.28316 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3442 -5.7197 2.2441 14 8 -0.5927 -5.6869 3.0136 15 6 0.8051 -7.0362 1.6738 16 7 -0.0333 -8.1165 2.1995 17 6 0.2759 -8.8742 3.2690 18 6 -0.7289 -9.7911 3.4927 19 6 -0.7801 -10.7636 4.5224 20 8 -1.7292 -11.5167 4.5996 21 6 -1.7379 -9.5607 2.4400 22 6 -2.9578 -10.1517 2.1241 23 6 -3.6798 -9.6910 1.0446 24 6 -3.1955 -8.6432 0.2753 25 6 -1.9894 -8.0494 0.5772 26 6 -1.2454 -8.5009 1.6629 27 6 0.5344 -3.2876 2.4474 28 6 0.2343 -2.3368 1.2819 29 1 -0.4850 0.8401 -0.0004 30 1 1.0134 -4.0707 -0.8208 31 1 2.7052 -3.5085 -0.8012 32 1 3.0125 -4.2759 1.4845 33 1 2.2517 -5.6159 0.5906 34 1 0.7246 -7.0095 0.5871 35 1 1.8429 -7.2115 1.9570 36 1 1.1730 -8.7767 3.8624 37 1 0.0252 -10.8347 5.2386 38 1 -3.3369 -10.9670 2.7225 39 1 -4.6269 -10.1471 0.7969 40 1 -3.7693 -8.2894 -0.5684 41 1 -1.6219 -7.2340 -0.0281 42 1 1.3246 -2.8665 3.0689 43 1 -0.3666 -3.4306 3.0440 44 1 0.0946 -1.3248 1.6621 45 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283218097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = 13.895018 kcal Electronic energy + Delta-G solvation = -29300.732165 eV Core-core repulsion = 25284.422354 eV Total energy + Delta-G solvation = -4016.309811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70010 -40.98224 -39.41300 -38.57969 -37.96039 -35.71367 -34.14576 -33.08992 -32.24082 -31.30972 -30.29724 -29.28735 -28.20346 -25.56213 -24.88825 -24.37793 -23.77330 -22.74344 -21.88815 -20.71572 -20.22046 -18.98999 -18.28282 -17.99447 -17.76832 -16.92614 -16.76855 -16.53482 -16.45358 -16.15858 -15.76203 -15.51921 -15.43923 -15.18094 -15.03011 -14.91866 -14.81536 -14.69443 -14.23214 -14.18483 -13.54155 -13.39243 -13.22349 -13.14461 -12.68230 -12.62806 -12.57559 -12.50182 -12.33462 -12.03551 -12.00815 -11.88400 -11.71868 -11.04854 -10.61771 -10.57960 -10.56595 -9.89112 -9.28766 -8.74310 -8.67819 -7.90211 -5.38865 -0.10582 0.48435 0.78038 1.43561 1.46863 1.49272 1.50660 1.56733 2.04002 2.36130 2.50289 2.94521 3.25505 3.34537 3.54276 3.59472 3.63020 3.64963 3.91899 4.04854 4.16808 4.20897 4.21858 4.26148 4.30498 4.36571 4.52533 4.52649 4.63400 4.65016 4.72775 4.77726 4.83408 4.94436 5.05189 5.18976 5.25175 5.41245 5.42988 5.56517 5.58665 5.63499 5.64645 5.66919 6.07173 6.12064 6.33935 6.42399 6.85477 7.03690 7.08277 7.78517 8.30368 9.14773 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.002493 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.276643 B =11227.748919 C =11785.281251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.261 4.261 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.121 3.879 11 C 0.095 3.905 12 N -0.594 5.594 13 C 0.488 3.512 14 O -0.582 6.582 15 C 0.088 3.912 16 N -0.445 5.445 17 C 0.180 3.820 18 C -0.334 4.334 19 C 0.411 3.589 20 O -0.538 6.538 21 C -0.087 4.087 22 C -0.099 4.099 23 C -0.136 4.136 24 C -0.114 4.114 25 C -0.127 4.127 26 C 0.068 3.932 27 C 0.105 3.895 28 C 0.170 3.830 29 H 0.249 0.751 30 H 0.016 0.984 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.141 0.859 35 H 0.181 0.819 36 H 0.238 0.762 37 H 0.145 0.855 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.124 0.876 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.066 0.934 45 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.705 -19.112 3.037 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.228 1.228 6 H -0.202 1.202 7 C -0.391 4.391 8 H 0.096 0.904 9 N -0.332 5.332 10 C -0.005 4.005 11 C -0.028 4.028 12 N -0.327 5.327 13 C 0.276 3.724 14 O -0.462 6.462 15 C -0.036 4.036 16 N -0.123 5.123 17 C 0.045 3.955 18 C -0.342 4.342 19 C 0.277 3.723 20 O -0.418 6.418 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.154 4.154 24 C -0.133 4.133 25 C -0.147 4.147 26 C -0.035 4.035 27 C -0.019 4.019 28 C 0.043 3.957 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.198 0.802 36 H 0.254 0.746 37 H 0.161 0.839 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 5.827 -19.077 3.296 20.217 hybrid contribution -0.395 1.745 -0.259 1.807 sum 5.432 -17.332 3.037 18.416 Atomic orbital electron populations 1.70175 1.06913 1.26025 1.55288 1.25853 0.95892 1.01804 1.01175 0.85349 0.77490 0.79141 0.78506 1.19860 1.22794 1.20186 1.19539 0.93242 0.85588 1.40704 0.90382 1.44262 1.36178 1.03018 1.49775 1.21632 0.98684 0.85951 0.94229 1.22617 0.87685 1.02126 0.90367 1.48122 1.33182 1.05848 1.45501 1.21453 0.82626 0.86697 0.81657 1.90755 1.30148 1.87180 1.38112 1.22154 0.97606 0.81502 1.02334 1.43353 1.16481 1.27414 1.25056 1.23352 0.99138 0.87006 0.86041 1.20735 0.98966 1.09035 1.05505 1.22365 0.88252 0.77959 0.83704 1.90505 1.37064 1.41178 1.73074 1.19348 0.96002 0.97111 0.96543 1.20719 0.93453 0.99968 0.97670 1.21273 1.00834 0.97867 0.95453 1.21124 0.95135 0.96367 1.00672 1.20335 0.95993 1.01508 0.96843 1.18423 0.88564 0.98194 0.98279 1.22054 0.99795 0.83465 0.96623 1.20844 0.88139 0.97725 0.88947 0.94167 0.96559 0.89913 0.89692 0.85479 0.84120 0.80227 0.74608 0.83904 0.86190 0.83662 0.83443 0.85770 0.91209 0.91346 0.91614 0.99339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.69 11.20 21.65 0.24 -53.45 16 2 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 3 Si 0.97 42.32 29.59 68.60 2.03 44.35 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.26 -12.96 9.57 84.03 0.80 -12.16 16 8 H 0.08 3.65 7.89 -2.91 -0.02 3.63 16 9 N -0.61 -27.19 2.96 -697.35 -2.06 -29.25 16 10 C 0.12 3.89 6.70 86.56 0.58 4.47 16 11 C 0.10 2.04 6.52 86.56 0.56 2.60 16 12 N -0.59 -16.65 2.95 -817.16 -2.41 -19.05 16 13 C 0.49 12.82 7.77 87.66 0.68 13.50 16 14 O -0.58 -21.35 15.82 -3.05 -0.05 -21.40 16 15 C 0.09 1.27 4.75 85.63 0.41 1.67 16 16 N -0.44 -8.74 2.21 -518.66 -1.15 -9.89 16 17 C 0.18 2.77 11.22 84.17 0.94 3.71 16 18 C -0.33 -7.50 6.13 -20.03 -0.12 -7.62 16 19 C 0.41 8.41 11.44 68.68 0.79 9.20 16 20 O -0.54 -16.20 16.81 -3.42 -0.06 -16.26 16 21 C -0.09 -2.46 6.24 -20.06 -0.13 -2.59 16 22 C -0.10 -2.81 9.80 22.39 0.22 -2.59 16 23 C -0.14 -3.27 10.03 22.28 0.22 -3.04 16 24 C -0.11 -2.69 10.01 22.28 0.22 -2.47 16 25 C -0.13 -3.26 9.96 22.38 0.22 -3.04 16 26 C 0.07 1.78 6.77 38.90 0.26 2.05 16 27 C 0.11 3.83 6.59 86.42 0.57 4.40 16 28 C 0.17 7.82 5.51 86.42 0.48 8.30 16 29 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 2.43 7.93 -2.39 -0.02 2.42 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.13 1.30 5.91 -2.39 -0.01 1.29 16 34 H 0.14 1.57 7.72 -2.39 -0.02 1.55 16 35 H 0.18 0.64 7.87 -2.39 -0.02 0.62 16 36 H 0.24 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.12 3.47 7.38 -2.91 -0.02 3.45 16 39 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 2.66 6.99 -2.38 -0.02 2.64 16 44 H 0.07 3.47 6.00 -2.39 -0.01 3.45 16 45 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 Total: -1.00 -83.56 375.64 4.69 -78.87 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.01 Total: 12.00 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 7.13 Total: 14.08 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -5.38 Total: -111.65 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.11 Total: -37.66 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -83.56 4.69 -78.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283218097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.770 kcal (2) G-P(sol) polarization free energy of solvation -83.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds