Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47454 * 2 1 4 4 C 1.52996 * 109.47396 * 239.99397 * 2 1 3 5 5 N 1.46894 * 109.47341 * 185.00304 * 4 2 1 6 6 C 1.46908 * 111.00318 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47073 * 179.97438 * 6 5 4 8 8 C 1.38233 * 120.40622 * 269.97257 * 7 6 5 9 9 N 1.31848 * 120.82042 * 180.02562 * 8 7 6 10 10 C 1.31874 * 121.74984 * 0.02562 * 9 8 7 11 11 C 1.38421 * 120.72845 * 0.02562 * 10 9 8 12 12 F 1.35097 * 120.44287 * 180.02562 * 11 10 9 13 13 C 1.38588 * 120.40658 * 90.00273 * 7 6 5 14 14 N 1.46507 * 109.46899 * 119.99656 * 2 1 3 15 15 C 1.46500 * 120.00042 * 59.99733 * 14 2 1 16 16 C 1.34771 * 119.99938 * 240.00070 * 14 2 1 17 17 O 1.21287 * 120.00297 * 359.97438 * 16 14 2 18 18 C 1.50700 * 120.00317 * 179.97438 * 16 14 2 19 19 S 1.80996 * 109.47331 * 179.97438 * 18 16 14 20 20 C 1.76204 * 99.99839 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99905 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99844 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00297 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99858 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47278 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46831 * 120.00259 * 24 22 20 27 27 H 1.48496 * 109.47556 * 240.00228 * 24 22 20 28 28 H 1.09003 * 109.47454 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47396 * 300.00463 * 1 2 3 30 30 H 1.09002 * 109.46664 * 60.00413 * 1 2 3 31 31 H 1.08999 * 109.47013 * 65.00041 * 4 2 1 32 32 H 1.09004 * 109.47162 * 305.00389 * 4 2 1 33 33 H 1.00897 * 111.00186 * 56.04460 * 5 4 2 34 34 H 1.09000 * 109.46774 * 59.99678 * 6 5 4 35 35 H 1.09001 * 109.46816 * 300.00186 * 6 5 4 36 36 H 1.07994 * 119.59239 * 0.05453 * 8 7 6 37 37 H 1.08001 * 119.63091 * 180.02562 * 10 9 8 38 38 H 1.08011 * 120.79835 * 359.97438 * 13 7 6 39 39 H 1.09001 * 109.46430 * 89.99918 * 15 14 2 40 40 H 1.08998 * 109.47100 * 209.99930 * 15 14 2 41 41 H 1.09000 * 109.47067 * 330.00511 * 15 14 2 42 42 H 1.08998 * 109.47380 * 300.00231 * 18 16 14 43 43 H 1.09004 * 109.46677 * 59.99661 * 18 16 14 44 44 H 0.97004 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5040 -0.8268 -1.1902 6 6 4.0305 -1.5151 -2.3765 7 6 5.5318 -1.6036 -2.2809 8 6 6.3263 -0.5989 -2.8007 9 7 7.6406 -0.6682 -2.7221 10 6 8.2487 -1.6891 -2.1502 11 6 7.5196 -2.7334 -1.6081 12 9 8.1485 -3.7762 -1.0231 13 6 6.1328 -2.6935 -1.6714 14 7 2.0183 -0.6906 1.1963 15 6 1.6643 -2.0931 1.4282 16 6 2.7931 -0.0356 2.0834 17 8 3.0865 1.1255 1.8912 18 6 3.2949 -0.7456 3.3142 19 16 4.3012 0.3918 4.2989 20 6 4.7437 -0.6690 5.6345 21 1 4.3931 -1.6904 5.6518 22 6 5.5429 -0.1920 6.6641 23 7 5.9698 1.0529 6.6433 24 14 6.0114 -1.3164 8.0803 25 1 5.4080 -2.6567 7.8688 26 1 7.4896 -1.4439 8.1429 27 1 5.5097 -0.7428 9.3548 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7517 -0.1585 -2.1369 32 1 1.6054 -1.7199 -1.2950 33 1 3.7995 -1.2884 -0.3431 34 1 3.7559 -0.9574 -3.2718 35 1 3.6096 -2.5191 -2.4306 36 1 5.8649 0.2535 -3.2767 37 1 9.3276 -1.7106 -2.1043 38 1 5.5371 -3.4933 -1.2566 39 1 2.4156 -2.7376 0.9719 40 1 1.6237 -2.2851 2.5004 41 1 0.6903 -2.3001 0.9848 42 1 2.4470 -1.0878 3.9075 43 1 3.9003 -1.6024 3.0179 44 1 6.5281 1.3864 7.3631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715329345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -39.869354 kcal Electronic energy + Delta-G solvation = -27005.261991 eV Core-core repulsion = 22998.604428 eV Total energy + Delta-G solvation = -4006.657563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.17196 -40.41169 -39.76817 -37.12139 -35.36915 -33.05082 -32.42408 -31.93290 -31.03286 -28.71021 -27.14641 -26.81288 -25.48443 -24.44260 -23.87762 -22.12959 -21.53258 -19.00698 -17.78661 -17.64838 -17.59559 -17.09218 -16.88415 -16.11611 -16.05273 -15.72768 -15.32249 -14.88568 -14.80217 -14.38640 -14.15482 -13.96799 -13.57003 -13.49738 -13.34057 -13.31297 -13.06965 -12.84913 -12.75105 -12.40892 -12.33927 -12.24717 -11.98794 -11.90771 -11.56399 -11.07061 -11.04448 -10.99380 -10.74749 -10.10164 -9.87513 -9.79015 -9.31328 -9.15827 -9.06924 -8.73697 -8.50856 -8.20944 -6.49004 -6.21191 -3.91525 0.64381 0.80168 2.91288 3.07921 3.21565 3.25683 3.30173 3.31340 3.59938 3.72938 3.98551 4.18022 4.20558 4.36303 4.41754 4.60997 4.64362 4.80811 4.91266 4.96764 5.03608 5.09241 5.11706 5.14007 5.29490 5.30705 5.35054 5.36615 5.48799 5.52036 5.55290 5.58658 5.65130 5.77886 5.87658 5.96235 6.07419 6.11775 6.34937 6.62626 6.73572 7.07609 7.53004 7.57279 7.60071 8.35527 8.58887 9.24229 10.86250 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007767 B = 0.003562 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.111517 B = 7858.212206 C =10381.472125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 H 0.111 0.889 4 C 0.054 3.946 5 N -0.679 5.679 6 C 0.104 3.896 7 C -0.106 4.106 8 C 0.113 3.887 9 N -0.456 5.456 10 C 0.075 3.925 11 C 0.050 3.950 12 F -0.129 7.129 13 C -0.104 4.104 14 N -0.621 5.621 15 C 0.078 3.922 16 C 0.535 3.465 17 O -0.507 6.507 18 C -0.150 4.150 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.348 0.652 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.143 0.857 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -9.881 -21.092 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.129 0.871 4 C -0.077 4.077 5 N -0.312 5.312 6 C -0.026 4.026 7 C -0.109 4.109 8 C -0.045 4.045 9 N -0.163 5.163 10 C -0.083 4.083 11 C 0.029 3.971 12 F -0.108 7.108 13 C -0.131 4.131 14 N -0.358 5.358 15 C -0.066 4.066 16 C 0.322 3.678 17 O -0.380 6.380 18 C -0.301 4.301 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.168 0.832 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.161 0.839 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.426 -6.740 -21.871 23.771 hybrid contribution -0.689 -4.081 1.941 4.571 sum -7.115 -10.821 -19.930 23.768 Atomic orbital electron populations 1.22107 0.94848 1.02071 1.02807 1.21072 0.93409 0.99078 0.83184 0.87118 1.22333 0.87431 0.99132 0.98757 1.60382 1.09888 1.56490 1.04418 1.20806 0.88837 0.97605 0.95327 1.20699 0.97250 0.94378 0.98529 1.22778 0.88555 0.97240 0.95923 1.67783 1.11623 1.22779 1.14152 1.22958 1.01350 0.88794 0.95248 1.18779 0.91463 0.87651 0.99239 1.91540 1.82217 1.55345 1.81700 1.21568 0.93104 0.99623 0.98847 1.47921 1.52530 1.12255 1.23140 1.21721 1.00195 0.81894 1.02767 1.20304 0.77143 0.86848 0.83466 1.90703 1.55636 1.16466 1.75219 1.23554 1.04131 1.04662 0.97704 1.85434 1.61005 1.15191 1.21670 1.22895 1.37281 0.99731 1.08417 0.90988 1.24980 0.95099 0.95508 0.97928 1.70027 1.33181 1.14344 1.32656 0.86139 0.78359 0.80112 0.81022 1.19650 1.20553 1.20548 0.92509 0.91698 0.91443 0.89850 0.95025 0.83223 0.89276 0.94038 0.81783 0.81544 0.83871 0.93516 0.90523 0.91285 0.89417 0.89569 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.17 37.16 0.34 -1.01 16 2 C 0.14 1.50 2.95 -67.93 -0.20 1.30 16 3 H 0.11 1.57 6.90 -51.93 -0.36 1.21 16 4 C 0.05 0.46 5.03 -3.83 -0.02 0.44 16 5 N -0.68 -7.06 6.48 -115.06 -0.75 -7.80 16 6 C 0.10 0.82 5.84 -4.97 -0.03 0.79 16 7 C -0.11 -1.03 5.41 -104.50 -0.57 -1.59 16 8 C 0.11 1.19 10.86 -17.55 -0.19 1.00 16 9 N -0.46 -5.52 10.36 -13.20 -0.14 -5.66 16 10 C 0.08 0.83 11.17 -17.47 -0.20 0.64 16 11 C 0.05 0.56 7.35 -39.28 -0.29 0.27 16 12 F -0.13 -1.53 17.28 2.25 0.04 -1.49 16 13 C -0.10 -1.05 9.85 -39.22 -0.39 -1.44 16 14 N -0.62 -8.01 1.83 -173.93 -0.32 -8.33 16 15 C 0.08 0.74 9.38 59.85 0.56 1.30 16 16 C 0.53 9.82 7.69 -10.99 -0.08 9.74 16 17 O -0.51 -11.41 15.19 5.55 0.08 -11.33 16 18 C -0.15 -3.00 4.71 36.01 0.17 -2.83 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.26 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.06 0.40 6.66 -51.93 -0.35 0.06 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.23 7.84 -51.93 -0.41 -0.18 16 33 H 0.35 4.20 7.84 -39.29 -0.31 3.89 16 34 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.04 0.28 8.10 -51.93 -0.42 -0.15 16 36 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.05 0.39 8.13 -51.93 -0.42 -0.03 16 40 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 41 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 42 H 0.09 1.63 7.40 -51.92 -0.38 1.25 16 43 H 0.09 1.61 8.11 -51.91 -0.42 1.19 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -35.24 386.86 -8.67 -43.92 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.24 Total: 2.11 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.69 Total: -4.33 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.47 Total: -47.34 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.24 -8.67 -43.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715329345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.050 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds