Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.52997 * 109.47454 * 120.00460 * 2 1 3 5 5 N 1.46896 * 109.47369 * 174.99684 * 4 2 1 6 6 C 1.46911 * 110.99927 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.46799 * 180.02562 * 6 5 4 8 8 C 1.38233 * 120.40483 * 269.72437 * 7 6 5 9 9 N 1.31842 * 120.81778 * 179.68375 * 8 7 6 10 10 C 1.31873 * 121.75234 * 0.63101 * 9 8 7 11 11 C 1.38422 * 120.72456 * 359.66090 * 10 9 8 12 12 F 1.35097 * 120.44374 * 180.02562 * 11 10 9 13 13 C 1.38590 * 120.40652 * 90.00369 * 7 6 5 14 14 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00126 * 14 2 1 16 16 C 1.34773 * 119.99968 * 119.99670 * 14 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 14 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 14 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 14 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00625 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99753 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46972 * 89.99852 * 24 22 20 26 26 H 1.48496 * 109.47365 * 210.00140 * 24 22 20 27 27 H 1.48495 * 109.47015 * 330.00282 * 24 22 20 28 28 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 29 29 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.00046 * 4 2 1 32 32 H 1.09006 * 109.47092 * 55.00023 * 4 2 1 33 33 H 1.00906 * 110.99975 * 56.05175 * 5 4 2 34 34 H 1.09001 * 109.46724 * 300.00317 * 6 5 4 35 35 H 1.09001 * 109.46776 * 60.00392 * 6 5 4 36 36 H 1.08002 * 119.58948 * 0.02562 * 8 7 6 37 37 H 1.07995 * 119.63634 * 179.67764 * 10 9 8 38 38 H 1.08003 * 120.79774 * 359.97438 * 13 7 6 39 39 H 1.09001 * 109.47443 * 269.99328 * 15 14 2 40 40 H 1.08999 * 109.47479 * 30.00306 * 15 14 2 41 41 H 1.09006 * 109.47080 * 149.99714 * 15 14 2 42 42 H 1.09001 * 109.46564 * 299.73030 * 18 16 14 43 43 H 1.08998 * 109.47012 * 59.72084 * 18 16 14 44 44 H 0.96993 * 120.00179 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5040 -0.8268 1.1902 6 6 4.0304 -1.5151 2.3766 7 6 5.5318 -1.6036 2.2810 8 6 6.1314 -2.6934 1.6781 9 7 7.4439 -2.7763 1.5845 10 6 8.2347 -1.8383 2.0682 11 6 7.7071 -0.7202 2.6908 12 9 8.5225 0.2375 3.1838 13 6 6.3284 -0.5961 2.8017 14 7 2.0183 -0.6905 -1.1962 15 6 1.6644 -2.0930 -1.4281 16 6 2.7931 -0.0355 -2.0833 17 8 3.0821 1.1271 -1.8939 18 6 3.2951 -0.7456 -3.3142 19 16 4.2940 0.3944 -4.3034 20 6 4.7378 -0.6668 -5.6380 21 1 4.3909 -1.6895 -5.6532 22 6 5.5333 -0.1886 -6.6700 23 7 5.8645 -0.9812 -7.6674 24 14 6.1328 1.5805 -6.6442 25 1 7.4377 1.6507 -5.9386 26 1 6.2965 2.0681 -8.0373 27 1 5.1410 2.4289 -5.9361 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9280 0.0825 1.0823 34 1 3.7558 -0.9573 3.2719 35 1 3.6096 -2.5191 2.4306 36 1 5.5169 -3.4842 1.2738 37 1 9.3057 -1.9436 1.9773 38 1 5.8875 0.2651 3.2818 39 1 2.4158 -2.7376 -0.9719 40 1 0.6904 -2.3001 -0.9849 41 1 1.6238 -2.2850 -2.5004 42 1 3.9044 -1.5994 -3.0178 43 1 2.4471 -1.0921 -3.9049 44 1 6.4201 -0.6468 -8.3887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715329349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -40.103574 kcal Electronic energy + Delta-G solvation = -26971.634101 eV Core-core repulsion = 22964.966381 eV Total energy + Delta-G solvation = -4006.667720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.23453 -40.43990 -39.72495 -37.15858 -35.44036 -33.10109 -32.39400 -31.94200 -31.05051 -28.74095 -27.18346 -26.73096 -25.56840 -24.49505 -23.91732 -22.17371 -21.58248 -19.12288 -17.71749 -17.66937 -17.62035 -17.13087 -16.93403 -16.11076 -16.05102 -15.59806 -15.25363 -15.03811 -14.85633 -14.56900 -14.19459 -13.90299 -13.61295 -13.53388 -13.35297 -13.24980 -13.09143 -12.85000 -12.75575 -12.70691 -12.29339 -12.21265 -11.99334 -11.95172 -11.66391 -11.21641 -11.01903 -10.97446 -10.52322 -10.14554 -9.89921 -9.81722 -9.37043 -9.20150 -8.96033 -8.74049 -8.45953 -8.41886 -6.85853 -6.24718 -3.95426 0.60492 0.76353 2.78568 3.06625 3.23238 3.29195 3.36573 3.53490 3.64916 3.68064 3.94495 4.15077 4.32889 4.36895 4.37216 4.54387 4.57274 4.73487 4.78972 4.87468 5.00278 5.08778 5.11981 5.14531 5.21147 5.25824 5.29105 5.33597 5.47174 5.48525 5.50962 5.53083 5.73802 5.80258 5.85324 5.89916 5.98454 6.10667 6.31044 6.57130 6.72860 7.02722 7.55090 7.57254 7.98506 8.46064 8.56399 9.21894 10.84661 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007974 B = 0.003558 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3510.760736 B = 7868.048599 C =10190.769695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.052 3.948 5 N -0.677 5.677 6 C 0.105 3.895 7 C -0.106 4.106 8 C 0.114 3.886 9 N -0.455 5.455 10 C 0.076 3.924 11 C 0.048 3.952 12 F -0.131 7.131 13 C -0.104 4.104 14 N -0.601 5.601 15 C 0.082 3.918 16 C 0.539 3.461 17 O -0.527 6.527 18 C -0.118 4.118 19 S -0.145 6.145 20 C -0.519 4.519 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.882 5.882 24 Si 0.856 3.144 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.236 1.236 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.348 0.652 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.144 0.856 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 -3.388 25.136 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.117 0.883 4 C -0.078 4.078 5 N -0.309 5.309 6 C -0.025 4.025 7 C -0.108 4.108 8 C -0.044 4.044 9 N -0.162 5.162 10 C -0.083 4.083 11 C 0.026 3.974 12 F -0.109 7.109 13 C -0.132 4.132 14 N -0.336 5.336 15 C -0.062 4.062 16 C 0.327 3.673 17 O -0.402 6.402 18 C -0.268 4.268 19 S 0.081 5.919 20 C -0.666 4.666 21 H 0.105 0.895 22 C -0.112 4.112 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.160 1.160 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.167 0.833 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.182 0.818 37 H 0.184 0.816 38 H 0.161 0.839 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.635 -2.969 24.456 25.513 hybrid contribution -0.225 0.793 0.686 1.072 sum -6.860 -2.176 25.142 26.151 Atomic orbital electron populations 1.22098 0.94694 1.02373 1.02672 1.20990 0.93655 0.98026 0.84014 0.88267 1.22366 0.87934 1.00985 0.96562 1.60390 1.05149 1.26712 1.38626 1.20796 0.89001 1.00716 0.91956 1.20696 0.96780 0.94876 0.98472 1.22790 0.90473 0.96969 0.94131 1.67792 1.05686 1.27398 1.15294 1.22968 1.01360 0.88985 0.94952 1.18785 0.88791 0.89174 1.00625 1.91530 1.72036 1.61912 1.85464 1.21555 0.91811 0.99911 0.99881 1.47549 1.51620 1.12270 1.22156 1.21709 1.00306 0.81884 1.02262 1.20176 0.76986 0.86610 0.83520 1.90659 1.56776 1.16675 1.76096 1.23281 1.03412 1.03337 0.96818 1.84747 1.64434 1.18669 1.24059 1.22318 1.37484 1.00117 1.06730 0.89454 1.24697 0.94442 0.98034 0.94058 1.69938 1.35884 1.35959 1.10049 0.86748 0.81375 0.85309 0.78494 1.19265 1.19999 1.15960 0.91688 0.92135 0.91651 0.94297 0.90489 0.83315 0.94017 0.89360 0.81821 0.81563 0.83869 0.92324 0.91670 0.90976 0.88597 0.88820 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.17 37.16 0.34 -0.92 16 2 C 0.14 1.40 2.88 -67.93 -0.20 1.20 16 3 H 0.10 1.25 6.90 -51.93 -0.36 0.89 16 4 C 0.05 0.40 4.98 -3.83 -0.02 0.38 16 5 N -0.68 -6.25 6.22 -115.05 -0.72 -6.96 16 6 C 0.10 0.74 5.84 -4.97 -0.03 0.71 16 7 C -0.11 -0.95 5.41 -104.49 -0.57 -1.52 16 8 C 0.11 1.17 10.86 -17.55 -0.19 0.98 16 9 N -0.45 -5.46 10.36 -13.20 -0.14 -5.60 16 10 C 0.08 0.82 11.17 -17.47 -0.20 0.62 16 11 C 0.05 0.50 7.34 -39.28 -0.29 0.21 16 12 F -0.13 -1.43 17.28 2.25 0.04 -1.39 16 13 C -0.10 -0.97 9.85 -39.22 -0.39 -1.35 16 14 N -0.60 -7.59 2.48 -173.93 -0.43 -8.02 16 15 C 0.08 0.80 9.40 59.84 0.56 1.36 16 16 C 0.54 9.60 7.69 -10.98 -0.08 9.51 16 17 O -0.53 -11.17 15.19 5.56 0.08 -11.09 16 18 C -0.12 -2.34 4.71 36.01 0.17 -2.17 16 19 S -0.15 -3.75 18.55 -107.50 -1.99 -5.75 16 20 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 23 N -0.88 -26.92 13.97 55.49 0.78 -26.15 16 24 Si 0.86 22.15 27.74 -169.99 -4.71 17.44 16 25 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.40 6.66 -51.93 -0.35 0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.52 7.84 -51.93 -0.41 0.11 16 33 H 0.35 3.77 8.72 -39.29 -0.34 3.43 16 34 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 35 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 41 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 42 H 0.10 1.84 8.11 -51.92 -0.42 1.41 16 43 H 0.09 1.74 7.39 -51.92 -0.38 1.36 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -35.06 385.35 -8.26 -43.32 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.30 Total: 1.47 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.67 Total: -3.07 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.51 Total: -46.73 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.06 -8.26 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715329349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.215 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds