Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47153 * 2 1 4 4 C 1.53000 * 109.46987 * 119.99979 * 2 1 3 5 5 N 1.46898 * 109.47200 * 174.99822 * 4 2 1 6 6 C 1.46895 * 110.99892 * 66.04712 * 5 4 2 7 7 C 1.46908 * 111.00355 * 190.00081 * 5 4 2 8 8 C 1.50693 * 109.47073 * 169.99914 * 7 5 4 9 9 C 1.38233 * 120.40622 * 269.97257 * 8 7 5 10 10 N 1.31848 * 120.82042 * 180.02562 * 9 8 7 11 11 C 1.31874 * 121.74984 * 0.02562 * 10 9 8 12 12 C 1.38421 * 120.72845 * 0.02562 * 11 10 9 13 13 F 1.35097 * 120.44287 * 180.02562 * 12 11 10 14 14 C 1.38588 * 120.40658 * 90.00273 * 8 7 5 15 15 N 1.46500 * 109.47180 * 239.99824 * 2 1 3 16 16 C 1.34777 * 119.99927 * 85.00171 * 15 2 1 17 17 O 1.21282 * 119.99849 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99818 * 180.02562 * 16 15 2 19 19 S 1.80998 * 109.46850 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00053 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00187 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00504 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00448 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99398 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47062 * 90.00149 * 24 22 20 26 26 H 1.48504 * 109.47087 * 209.99763 * 24 22 20 27 27 H 1.48496 * 109.47414 * 329.99519 * 24 22 20 28 28 H 1.09003 * 109.47065 * 300.00318 * 1 2 3 29 29 H 1.08995 * 109.47328 * 60.00255 * 1 2 3 30 30 H 1.09004 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47247 * 55.00204 * 4 2 1 32 32 H 1.09003 * 109.47474 * 295.00217 * 4 2 1 33 33 H 1.09002 * 109.47208 * 183.95548 * 6 5 4 34 34 H 1.09004 * 109.47560 * 303.95219 * 6 5 4 35 35 H 1.09000 * 109.47726 * 63.95699 * 6 5 4 36 36 H 1.09000 * 109.46774 * 49.99752 * 7 5 4 37 37 H 1.09001 * 109.46816 * 290.00259 * 7 5 4 38 38 H 1.07994 * 119.59239 * 0.05453 * 9 8 7 39 39 H 1.08001 * 119.63091 * 180.02562 * 11 10 9 40 40 H 1.08011 * 120.79835 * 359.97438 * 14 8 7 41 41 H 0.96999 * 119.99772 * 265.00228 * 15 2 1 42 42 H 1.09006 * 109.46851 * 299.99737 * 18 16 15 43 43 H 1.09000 * 109.47645 * 59.99678 * 18 16 15 44 44 H 0.96993 * 119.99902 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5039 -0.8267 1.1904 6 6 4.1309 0.4992 1.2720 7 6 4.0107 -1.7145 2.2456 8 6 5.4723 -1.9939 2.0079 9 6 5.8620 -3.0736 1.2377 10 7 7.1385 -3.3259 1.0249 11 6 8.0900 -2.5670 1.5328 12 6 7.7768 -1.4689 2.3152 13 9 8.7561 -0.6952 2.8323 14 6 6.4423 -1.1718 2.5593 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6489 -0.7289 -3.5877 19 16 2.7106 0.4343 -4.9730 20 6 3.3137 -0.6309 -6.2404 21 1 3.5230 -1.6674 -6.0204 22 6 3.5199 -0.1381 -7.5215 23 7 3.9709 -0.9337 -8.4681 24 14 3.1573 1.6544 -7.9021 25 1 4.3760 2.4680 -7.6611 26 1 2.7476 1.7856 -9.3234 27 1 2.0599 2.1347 -7.0244 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1584 2.1370 33 1 5.2100 0.3986 1.1558 34 1 3.7380 1.1364 0.4797 35 1 3.9101 0.9466 2.2411 36 1 3.4544 -2.6517 2.2300 37 1 3.8857 -1.2339 3.2158 38 1 5.1116 -3.7182 0.8045 39 1 9.1249 -2.8051 1.3362 40 1 6.1670 -0.3212 3.1653 41 1 2.2490 -1.6318 -1.1525 42 1 3.6480 -1.1215 -3.3985 43 1 1.9760 -1.5507 -3.8326 44 1 4.1146 -0.5894 -9.3634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733033518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -67.261358 kcal Electronic energy + Delta-G solvation = -26749.167649 eV Core-core repulsion = 22741.322279 eV Total energy + Delta-G solvation = -4007.845370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.03303 -41.27908 -40.72358 -38.74277 -36.14940 -34.66773 -33.73461 -32.57976 -32.05067 -29.97853 -28.48801 -27.84084 -27.76875 -24.78114 -24.58217 -22.62898 -22.04759 -21.30357 -19.86832 -18.42228 -18.28676 -17.91987 -17.84543 -17.28412 -17.03902 -17.03073 -16.64147 -16.26940 -16.04778 -15.61010 -15.54202 -14.96529 -14.91523 -14.64946 -14.45877 -14.20644 -14.10703 -13.92169 -13.76587 -13.42461 -13.33991 -13.25071 -13.00434 -12.99172 -12.85124 -12.60234 -12.55434 -12.27937 -11.85976 -11.67994 -11.16813 -10.88516 -10.82919 -10.64004 -10.51903 -9.98793 -9.93081 -9.29121 -8.97661 -8.51054 -6.21183 -0.12495 0.03574 1.01536 1.31150 1.47323 1.58251 1.69124 2.24824 2.35332 2.50287 2.74869 2.87157 2.95114 3.09177 3.45368 3.64009 3.70581 3.80871 3.89607 3.99751 4.08217 4.19841 4.27858 4.31861 4.40951 4.46298 4.50696 4.51944 4.70313 4.73957 4.80082 4.82335 4.83275 4.86055 5.02755 5.06700 5.14235 5.33763 5.60261 5.62678 5.71339 6.00807 6.05545 6.11943 6.64184 6.81268 6.94247 7.35151 8.61597 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.002794 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.728976 B =10017.367749 C =11775.251236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.061 0.939 4 C 0.057 3.943 5 N -0.545 5.545 6 C 0.022 3.978 7 C 0.101 3.899 8 C -0.096 4.096 9 C 0.103 3.897 10 N -0.484 5.484 11 C 0.062 3.938 12 C 0.032 3.968 13 F -0.138 7.138 14 C -0.103 4.103 15 N -0.690 5.690 16 C 0.536 3.464 17 O -0.568 6.568 18 C -0.109 4.109 19 S -0.176 6.176 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.045 3.955 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.415 0.585 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 -3.840 30.994 31.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.071 4.071 5 N -0.269 5.269 6 C -0.127 4.127 7 C -0.026 4.026 8 C -0.098 4.098 9 C -0.054 4.054 10 N -0.192 5.192 11 C -0.096 4.096 12 C 0.011 3.989 13 F -0.117 7.117 14 C -0.130 4.130 15 N -0.343 5.343 16 C 0.322 3.678 17 O -0.448 6.448 18 C -0.260 4.260 19 S 0.050 5.950 20 C -0.676 4.676 21 H 0.078 0.922 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.160 1.160 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.199 0.801 39 H 0.193 0.807 40 H 0.177 0.823 41 H 0.252 0.748 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.354 -2.847 29.812 29.978 hybrid contribution 0.719 0.085 0.392 0.823 sum -0.636 -2.762 30.204 30.337 Atomic orbital electron populations 1.22107 0.94164 1.03222 1.02176 1.21064 0.94232 0.96675 0.84073 0.92037 1.22454 0.86482 1.02779 0.95394 1.61870 1.05901 1.11656 1.47458 1.22413 0.99686 0.90071 1.00493 1.21082 0.89126 0.99162 0.93272 1.20839 0.97135 0.94936 0.96931 1.23191 0.92528 0.95862 0.93833 1.67801 1.02154 1.29138 1.20092 1.23166 1.01097 0.90891 0.94414 1.18939 0.86432 0.93434 1.00104 1.91512 1.61297 1.73762 1.85087 1.21837 0.90483 1.00647 1.00058 1.45590 1.66418 1.14515 1.07763 1.19818 0.76874 0.86520 0.84632 1.90672 1.51323 1.17483 1.85281 1.23252 1.05700 1.02173 0.94897 1.84652 1.86903 1.18852 1.04572 1.22475 1.50100 0.98214 0.96818 0.92163 1.25572 0.93253 1.02282 0.94908 1.70017 1.44597 1.37764 1.03235 0.85862 0.80969 0.79945 0.79551 1.18824 1.18262 1.15999 0.89725 0.94890 0.90516 0.87134 0.91153 0.92368 0.93096 0.93669 0.86482 0.91619 0.80076 0.80664 0.82256 0.74783 0.87691 0.87146 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.81 16 2 C 0.14 2.50 2.36 44.99 0.11 2.61 16 3 H 0.06 1.43 6.15 -2.39 -0.01 1.42 16 4 C 0.06 0.50 4.52 86.30 0.39 0.89 16 5 N -0.54 -6.25 4.48 -927.04 -4.15 -10.40 16 6 C 0.02 0.33 8.97 127.69 1.15 1.47 16 7 C 0.10 0.71 5.14 85.55 0.44 1.15 16 8 C -0.10 -1.17 4.89 -19.78 -0.10 -1.27 16 9 C 0.10 1.58 10.86 84.69 0.92 2.50 16 10 N -0.48 -9.75 10.36 -195.66 -2.03 -11.77 16 11 C 0.06 1.14 11.17 84.73 0.95 2.08 16 12 C 0.03 0.56 7.35 22.47 0.17 0.72 16 13 F -0.14 -2.58 17.28 44.97 0.78 -1.80 16 14 C -0.10 -1.41 8.13 22.51 0.18 -1.22 16 15 N -0.69 -15.14 4.80 -442.54 -2.12 -17.27 16 16 C 0.54 18.17 7.81 87.66 0.68 18.85 16 17 O -0.57 -23.98 15.53 -3.03 -0.05 -24.03 16 18 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 19 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 20 C -0.53 -31.33 10.04 67.95 0.68 -30.65 16 21 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 22 C 0.05 2.69 5.50 84.86 0.47 3.15 16 23 N -0.92 -56.73 13.97 21.65 0.30 -56.43 16 24 Si 0.91 45.70 27.74 68.60 1.90 47.61 16 25 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 27 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.11 0.48 7.93 -2.39 -0.02 0.46 16 32 H 0.07 0.43 8.12 -2.39 -0.02 0.41 16 33 H 0.06 0.99 6.18 -2.39 -0.01 0.98 16 34 H 0.05 1.05 6.41 -2.38 -0.02 1.04 16 35 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.12 0.33 7.88 -2.39 -0.02 0.31 16 37 H 0.07 0.30 8.07 -2.39 -0.02 0.28 16 38 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.16 1.55 8.06 -2.90 -0.02 1.53 16 41 H 0.42 6.92 8.60 -92.71 -0.80 6.13 16 42 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 44 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -78.44 384.73 0.92 -77.51 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.18 Total: 11.97 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 7.15 Total: -5.28 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -8.00 Total: -95.87 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.61 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -78.44 0.92 -77.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733033518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.253 kcal (2) G-P(sol) polarization free energy of solvation -78.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds