Wall clock time and date at job start Sat Apr 11 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47000 * 269.99771 * 3 2 1 5 5 H 1.48493 * 109.47032 * 29.99883 * 3 2 1 6 6 H 1.48502 * 109.47003 * 149.99914 * 3 2 1 7 7 C 1.38813 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00225 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00306 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47534 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.51346 * 60.09475 * 11 10 9 13 13 C 1.53717 * 109.44506 * 180.38830 * 11 10 9 14 14 N 1.47146 * 108.16441 * 172.37342 * 13 11 10 15 15 C 1.34772 * 120.98365 * 129.42739 * 14 13 11 16 16 O 1.21562 * 120.00133 * 3.51429 * 15 14 13 17 17 C 1.47767 * 119.99902 * 183.51176 * 15 14 13 18 18 C 1.40636 * 119.80794 * 310.80839 * 17 15 14 19 19 C 1.35701 * 120.92161 * 180.02562 * 18 17 15 20 20 C 1.40759 * 120.11579 * 0.02562 * 19 18 17 21 21 N 1.33639 * 120.83542 * 179.97438 * 20 19 18 22 22 C 1.31120 * 121.39876 * 179.97438 * 21 20 19 23 23 C 1.39315 * 121.76535 * 359.97438 * 22 21 20 24 24 C 1.36581 * 119.90700 * 0.02562 * 23 22 21 25 25 C 1.40898 * 118.15522 * 359.73140 * 24 23 22 26 26 C 1.38550 * 119.80302 * 130.78723 * 17 15 14 27 27 C 1.47153 * 118.03452 * 309.15603 * 14 13 11 28 28 C 1.53298 * 108.38577 * 50.78500 * 27 14 13 29 29 O 1.42963 * 109.22421 * 307.70162 * 28 27 14 30 30 H 0.97003 * 119.99960 * 0.02562 * 1 2 3 31 31 H 0.97006 * 120.00115 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47318 * 59.99183 * 10 9 7 33 33 H 1.09000 * 109.46553 * 300.00187 * 10 9 7 34 34 H 1.08995 * 109.83925 * 52.68471 * 13 11 10 35 35 H 1.09003 * 109.74146 * 291.99905 * 13 11 10 36 36 H 1.07997 * 119.53477 * 0.03053 * 18 17 15 37 37 H 1.07999 * 119.93799 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.11905 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.05087 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.92254 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.30175 * 359.97438 * 26 17 15 42 42 H 1.08995 * 109.68662 * 170.50602 * 27 14 13 43 43 H 1.08999 * 109.68289 * 291.02898 * 27 14 13 44 44 H 1.09002 * 109.50929 * 67.62198 * 28 27 14 45 45 H 1.09002 * 109.51695 * 187.77321 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0008 12 1 0.4390 -4.7638 -0.8905 13 6 1.8330 -6.1505 0.0118 14 7 0.8616 -7.2403 0.1963 15 6 0.8520 -8.3078 -0.6263 16 8 1.6938 -8.4117 -1.4971 17 6 -0.1818 -9.3519 -0.4697 18 6 -0.4369 -9.8981 0.8009 19 6 -1.3806 -10.8583 0.9705 20 6 -2.1213 -11.3233 -0.1324 21 7 -3.0537 -12.2687 0.0181 22 6 -3.7503 -12.7096 -1.0015 23 6 -3.5562 -12.2172 -2.2902 24 6 -2.6190 -11.2496 -2.5155 25 6 -1.8762 -10.7747 -1.4165 26 6 -0.8944 -9.7868 -1.5754 27 6 -0.0951 -7.1329 1.3092 28 6 -0.7668 -5.7568 1.2383 29 8 0.2402 -4.7445 1.1668 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 2.6841 -3.7141 0.8920 33 1 2.6854 -3.7149 -0.8878 34 1 2.5511 -6.1560 0.8318 35 1 2.3560 -6.2814 -0.9356 36 1 0.1262 -9.5483 1.6536 37 1 -1.5638 -11.2664 1.9536 38 1 -4.4946 -13.4750 -0.8380 39 1 -4.1460 -12.6000 -3.1100 40 1 -2.4547 -10.8565 -3.5079 41 1 -0.6978 -9.3659 -2.5504 42 1 -0.8496 -7.9146 1.2214 43 1 0.4320 -7.2363 2.2577 44 1 -1.3984 -5.7053 0.3514 45 1 -1.3757 -5.6025 2.1292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733742385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:18 Heat of formation + Delta-G solvation = -18.417846 kcal Electronic energy + Delta-G solvation = -28658.648426 eV Core-core repulsion = 24640.937423 eV Total energy + Delta-G solvation = -4017.711002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14640 -41.27849 -39.64500 -37.84624 -36.67873 -35.82470 -34.54257 -33.95424 -32.27396 -31.47438 -31.20706 -29.35944 -27.55303 -25.73497 -25.07347 -24.76070 -23.88073 -23.19933 -22.40076 -20.95769 -19.56214 -19.19213 -18.52954 -18.08630 -17.66922 -17.38681 -16.93715 -16.56961 -16.53960 -16.09922 -15.83259 -15.49772 -15.38956 -15.36760 -15.03873 -14.98995 -14.61808 -14.36153 -14.26644 -14.02623 -13.94396 -13.47973 -13.22445 -13.12610 -12.81543 -12.68647 -12.56916 -12.48695 -12.28310 -12.06347 -11.89825 -11.72185 -11.58391 -11.28045 -11.02788 -10.95570 -10.53670 -9.87915 -9.69824 -9.37336 -9.00889 -7.93987 -5.23535 -0.79665 -0.36569 0.85307 1.29641 1.47695 1.50235 1.58173 1.59721 1.98027 2.56455 2.72638 3.01720 3.15285 3.31336 3.39700 3.51121 3.52994 3.71039 3.82967 3.89519 3.93102 3.96428 4.02263 4.04432 4.10926 4.28202 4.30955 4.41008 4.46076 4.48829 4.62343 4.69385 4.73919 4.81157 4.85088 4.90003 4.93788 4.99016 5.07812 5.13357 5.16690 5.24692 5.45860 5.48644 5.72418 6.11542 6.20378 6.27713 6.83900 6.86597 7.33569 8.07566 8.32279 9.29735 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.002071 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.681196 B =13516.545333 C =13665.743572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.740 5.740 10 C 0.160 3.840 11 C 0.087 3.913 12 H 0.048 0.952 13 C 0.095 3.905 14 N -0.604 5.604 15 C 0.562 3.438 16 O -0.572 6.572 17 C -0.138 4.138 18 C -0.077 4.077 19 C -0.094 4.094 20 C 0.121 3.879 21 N -0.506 5.506 22 C 0.138 3.862 23 C -0.170 4.170 24 C -0.057 4.057 25 C -0.124 4.124 26 C -0.041 4.041 27 C 0.068 3.932 28 C 0.039 3.961 29 O -0.385 6.385 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.193 0.807 39 H 0.175 0.825 40 H 0.162 0.838 41 H 0.139 0.861 42 H 0.121 0.879 43 H 0.103 0.897 44 H 0.047 0.953 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -30.047 -0.298 31.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.033 3.967 11 C 0.028 3.972 12 H 0.066 0.934 13 C -0.028 4.028 14 N -0.336 5.336 15 C 0.352 3.648 16 O -0.452 6.452 17 C -0.141 4.141 18 C -0.097 4.097 19 C -0.113 4.113 20 C 0.000 4.000 21 N -0.214 5.214 22 C -0.034 4.034 23 C -0.189 4.189 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.060 4.060 27 C -0.053 4.053 28 C -0.038 4.038 29 O -0.303 6.303 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.209 0.791 39 H 0.193 0.807 40 H 0.180 0.820 41 H 0.157 0.843 42 H 0.139 0.861 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.850 -30.133 0.308 31.140 hybrid contribution 0.180 1.410 -1.163 1.837 sum -7.671 -28.723 -0.856 29.742 Atomic orbital electron populations 1.69845 1.06714 1.26060 1.59432 1.25634 0.96465 1.01281 1.03652 0.85079 0.77679 0.79163 0.77452 1.21325 1.22153 1.19294 1.19671 0.91610 0.85201 1.41312 0.90335 1.42404 1.05712 1.00824 1.89350 1.20779 0.93039 0.83880 0.99023 1.22561 0.92281 0.94132 0.88196 0.93374 1.22251 0.91430 0.84539 1.04565 1.48142 1.34901 1.19762 1.30822 1.18668 0.84239 0.81645 0.80237 1.90783 1.40445 1.78168 1.35809 1.19746 0.98925 0.99477 0.95912 1.21093 0.97235 0.95606 0.95738 1.20901 0.94966 0.96461 0.98936 1.19282 0.94509 0.93543 0.92652 1.68122 1.06619 1.11498 1.35198 1.23721 0.95185 0.96294 0.88167 1.22327 0.99258 0.97664 0.99665 1.21930 0.92901 0.94633 0.98832 1.18935 0.99131 0.99049 0.95530 1.21404 0.92493 0.93805 0.98339 1.22976 0.93314 0.99249 0.89785 1.23209 0.90188 0.86686 1.03764 1.88113 1.47055 1.52706 1.42462 0.94020 0.79300 0.94962 0.93840 0.88863 0.88663 0.82508 0.82363 0.79070 0.80718 0.82038 0.84313 0.86087 0.87921 0.93447 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.74 -39.36 5.49 -343.47 -1.89 -41.25 16 10 C 0.16 6.60 5.96 86.38 0.51 7.12 16 11 C 0.09 3.00 2.88 30.83 0.09 3.09 16 12 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 13 C 0.10 2.68 5.94 86.50 0.51 3.19 16 14 N -0.60 -14.83 3.01 -820.05 -2.47 -17.30 16 15 C 0.56 14.91 7.24 86.76 0.63 15.53 16 16 O -0.57 -19.44 16.50 -3.91 -0.06 -19.50 16 17 C -0.14 -2.88 5.04 -20.10 -0.10 -2.98 16 18 C -0.08 -1.21 7.26 22.27 0.16 -1.05 16 19 C -0.09 -1.48 9.95 22.30 0.22 -1.26 16 20 C 0.12 2.24 6.61 40.36 0.27 2.51 16 21 N -0.51 -8.79 10.33 -188.46 -1.95 -10.74 16 22 C 0.14 1.49 11.15 85.06 0.95 2.44 16 23 C -0.17 -1.42 10.03 22.14 0.22 -1.20 16 24 C -0.06 -0.69 9.89 22.53 0.22 -0.47 16 25 C -0.12 -2.20 5.74 -21.28 -0.12 -2.32 16 26 C -0.04 -0.81 9.46 22.82 0.22 -0.59 16 27 C 0.07 1.26 5.40 86.35 0.47 1.73 16 28 C 0.04 0.92 6.98 72.08 0.50 1.43 16 29 O -0.38 -13.30 10.13 -148.98 -1.51 -14.81 16 30 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.38 21.50 7.54 -92.70 -0.70 20.80 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.10 2.84 7.11 -2.39 -0.02 2.82 16 36 H 0.16 1.77 6.93 -2.91 -0.02 1.75 16 37 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 39 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.12 1.72 4.71 -2.39 -0.01 1.71 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -79.48 374.13 0.81 -78.67 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.33 Total: 26.83 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.06 Total: 9.72 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -6.02 Total: -129.91 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.57 Total: -34.31 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -79.48 0.81 -78.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733742385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.249 kcal (2) G-P(sol) polarization free energy of solvation -79.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds