Wall clock time and date at job start Sat Apr 11 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99932 * 2 1 4 4 H 1.48501 * 109.46991 * 270.00233 * 3 2 1 5 5 H 1.48503 * 109.46919 * 29.99710 * 3 2 1 6 6 H 1.48494 * 109.47161 * 149.99711 * 3 2 1 7 7 C 1.38807 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00268 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00262 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47030 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.51062 * 304.89592 * 11 10 9 13 13 C 1.52883 * 109.62174 * 184.90481 * 11 10 9 14 14 N 1.47148 * 108.60936 * 187.89556 * 13 11 10 15 15 C 1.34774 * 120.98563 * 230.50242 * 14 13 11 16 16 O 1.21561 * 119.99889 * 5.50290 * 15 14 13 17 17 C 1.47769 * 120.00200 * 185.49807 * 15 14 13 18 18 C 1.40625 * 119.80863 * 219.18932 * 17 15 14 19 19 C 1.35695 * 120.92648 * 179.97438 * 18 17 15 20 20 C 1.40761 * 120.11006 * 0.02562 * 19 18 17 21 21 N 1.33651 * 120.83470 * 180.29779 * 20 19 18 22 22 C 1.31125 * 121.39379 * 180.28393 * 21 20 19 23 23 C 1.39316 * 121.76618 * 359.43285 * 22 21 20 24 24 C 1.36575 * 119.90561 * 0.28138 * 23 22 21 25 25 C 1.40889 * 118.16240 * 359.97438 * 24 23 22 26 26 C 1.38552 * 119.79958 * 39.21491 * 17 15 14 27 27 C 1.47152 * 118.03179 * 50.23050 * 14 13 11 28 28 C 1.53301 * 108.38714 * 309.71199 * 27 14 13 29 29 O 1.42955 * 109.51225 * 65.00489 * 11 10 9 30 30 H 0.96995 * 120.00285 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99893 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46945 * 59.99469 * 10 9 7 33 33 H 1.09003 * 109.47071 * 300.00182 * 10 9 7 34 34 H 1.09005 * 109.61685 * 68.07560 * 13 11 10 35 35 H 1.09001 * 109.52513 * 307.66840 * 13 11 10 36 36 H 1.08008 * 119.53826 * 359.97438 * 18 17 15 37 37 H 1.08006 * 119.94951 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.11405 * 179.71121 * 22 21 20 39 39 H 1.08003 * 120.04402 * 180.29873 * 23 22 21 40 40 H 1.08003 * 120.92210 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.30085 * 359.97438 * 26 17 15 42 42 H 1.08994 * 109.68304 * 69.43729 * 27 14 13 43 43 H 1.09002 * 109.68293 * 189.99494 * 27 14 13 44 44 H 1.08991 * 109.51332 * 172.22750 * 28 27 14 45 45 H 1.08994 * 109.51114 * 292.38555 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3810 -4.7142 0.8441 13 6 1.8209 -6.1422 0.1243 14 7 0.8690 -7.2477 -0.0678 15 6 0.8010 -8.2657 0.8128 16 8 1.4599 -8.2312 1.8338 17 6 -0.0746 -9.4238 0.5374 18 6 -0.8016 -10.0154 1.5857 19 6 -1.6126 -11.0793 1.3583 20 6 -1.7365 -11.6079 0.0596 21 7 -2.5357 -12.6516 -0.1819 22 6 -2.6551 -13.1563 -1.3862 23 6 -1.9669 -12.6259 -2.4752 24 6 -1.1372 -11.5552 -2.3005 25 6 -1.0074 -11.0191 -1.0041 26 6 -0.1740 -9.9205 -0.7522 27 6 -0.0108 -7.2059 -1.2466 28 6 -0.6823 -5.8288 -1.3001 29 8 0.3204 -4.8129 -1.2198 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6849 -3.7144 0.8905 33 1 2.6849 -3.7144 -0.8895 34 1 2.2728 -6.2145 1.1137 35 1 2.5978 -6.1897 -0.6388 36 1 -0.7131 -9.6175 2.5859 37 1 -2.1635 -11.5217 2.1752 38 1 -3.3079 -14.0030 -1.5388 39 1 -2.0896 -13.0606 -3.4562 40 1 -0.5961 -11.1307 -3.1333 41 1 0.3850 -9.4650 -1.5562 42 1 0.5784 -7.3623 -2.1501 43 1 -0.7715 -7.9822 -1.1647 44 1 -1.2296 -5.7269 -2.2371 45 1 -1.3716 -5.7271 -0.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733742386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:21 Heat of formation + Delta-G solvation = 7.764419 kcal Electronic energy + Delta-G solvation = -28716.456891 eV Core-core repulsion = 24699.881237 eV Total energy + Delta-G solvation = -4016.575654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46133 -40.37449 -38.53091 -37.07465 -35.21126 -34.47169 -33.95605 -32.34085 -31.17488 -30.73409 -30.04528 -28.19453 -26.01239 -24.98685 -24.11630 -23.65529 -22.66200 -22.38879 -21.01389 -20.08093 -18.64976 -17.84009 -17.38498 -17.11996 -16.69097 -16.40565 -15.92229 -15.57512 -15.24369 -14.87527 -14.75304 -14.72140 -14.55900 -14.33114 -14.02042 -13.64290 -13.57086 -13.35236 -13.15267 -12.83556 -12.56819 -12.45256 -12.37553 -11.93371 -11.85811 -11.64050 -11.07000 -11.03449 -10.88912 -10.80128 -10.53207 -10.17954 -10.02861 -9.95707 -9.91075 -9.68768 -9.26750 -8.86761 -8.76164 -8.59289 -6.89443 -5.72752 -3.01630 -0.22925 0.25019 1.43737 2.07927 2.55610 2.84604 3.46213 3.50882 3.52840 3.62404 3.78840 3.89788 4.01528 4.09598 4.22650 4.37401 4.53029 4.56934 4.59598 4.69062 4.80649 4.82818 4.97129 5.00472 5.07497 5.24816 5.26600 5.35091 5.38928 5.48220 5.55451 5.59902 5.60810 5.65531 5.76524 5.82644 5.86594 5.91525 6.00675 6.20609 6.26449 6.30837 6.54748 6.67662 7.08849 7.42012 7.42090 7.72022 7.85740 8.45227 9.56938 10.13731 10.49471 11.50051 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.002087 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.024301 B =13410.580562 C =13818.652620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.073 3.927 12 H 0.064 0.936 13 C 0.085 3.915 14 N -0.606 5.606 15 C 0.559 3.441 16 O -0.528 6.528 17 C -0.118 4.118 18 C -0.055 4.055 19 C -0.096 4.096 20 C 0.141 3.859 21 N -0.477 5.477 22 C 0.139 3.861 23 C -0.179 4.179 24 C -0.048 4.048 25 C -0.111 4.111 26 C -0.060 4.060 27 C 0.062 3.938 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.037 0.963 33 H 0.030 0.970 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.161 0.839 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 -29.089 -5.731 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.036 3.964 11 C 0.014 3.986 12 H 0.082 0.918 13 C -0.037 4.037 14 N -0.339 5.339 15 C 0.348 3.652 16 O -0.405 6.405 17 C -0.121 4.121 18 C -0.076 4.076 19 C -0.114 4.114 20 C 0.020 3.980 21 N -0.185 5.185 22 C -0.033 4.033 23 C -0.199 4.199 24 C -0.074 4.074 25 C -0.113 4.113 26 C -0.080 4.080 27 C -0.061 4.061 28 C -0.033 4.033 29 O -0.275 6.275 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.126 -29.085 -4.528 29.878 hybrid contribution 0.463 1.020 -0.727 1.335 sum -4.663 -28.065 -5.255 28.931 Atomic orbital electron populations 1.69671 1.05120 1.25584 1.57677 1.24750 0.95537 0.97701 1.03035 0.86171 0.78622 0.83786 0.77490 1.21730 1.21808 1.20748 1.19222 0.91026 0.84060 1.42724 0.91112 1.42228 1.06012 0.99488 1.89365 1.20615 0.92360 0.84613 0.98860 1.22728 0.94261 0.94183 0.87388 0.91769 1.22322 0.91635 0.85253 1.04506 1.48059 1.38461 1.22556 1.24872 1.18276 0.81955 0.82126 0.82871 1.90811 1.44940 1.79236 1.25524 1.19937 1.00045 0.97836 0.94303 1.20870 0.93398 0.94233 0.99079 1.20728 0.99293 0.96109 0.95301 1.19017 0.93077 0.92254 0.93656 1.68092 1.17022 1.09990 1.23406 1.23069 0.95300 0.97390 0.87583 1.21925 0.98827 0.98088 1.01046 1.21562 0.95688 0.94430 0.95737 1.18750 0.99985 0.97858 0.94751 1.21617 0.96098 0.94223 0.96037 1.22876 0.94596 1.00314 0.88323 1.22928 0.90949 0.86306 1.03079 1.88166 1.49363 1.52038 1.37920 0.93551 0.77909 0.94587 0.95247 0.87760 0.90132 0.84132 0.83934 0.82171 0.84184 0.83987 0.84070 0.90109 0.88523 0.87673 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.95 5.55 -59.91 -0.33 -19.28 16 10 C 0.16 3.34 5.93 -4.04 -0.02 3.32 16 11 C 0.07 1.24 2.80 -26.79 -0.07 1.16 16 12 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 13 C 0.09 1.20 5.92 -3.75 -0.02 1.17 16 14 N -0.61 -7.54 3.03 -173.67 -0.53 -8.06 16 15 C 0.56 7.42 7.33 -12.37 -0.09 7.33 16 16 O -0.53 -8.80 16.36 5.31 0.09 -8.71 16 17 C -0.12 -1.26 5.16 -104.99 -0.54 -1.80 16 18 C -0.06 -0.55 9.51 -39.59 -0.38 -0.93 16 19 C -0.10 -0.89 9.95 -39.54 -0.39 -1.29 16 20 C 0.14 1.38 6.61 -84.77 -0.56 0.82 16 21 N -0.48 -4.53 10.33 -10.91 -0.11 -4.64 16 22 C 0.14 0.90 11.15 -17.45 -0.19 0.70 16 23 C -0.18 -0.91 10.03 -39.78 -0.40 -1.31 16 24 C -0.05 -0.29 9.89 -39.18 -0.39 -0.68 16 25 C -0.11 -0.94 5.74 -106.82 -0.61 -1.55 16 26 C -0.06 -0.51 7.15 -38.74 -0.28 -0.79 16 27 C 0.06 0.60 5.00 -3.53 -0.02 0.58 16 28 C 0.05 0.55 6.99 37.31 0.26 0.81 16 29 O -0.36 -6.09 10.33 -35.23 -0.36 -6.45 16 30 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.39 10.74 7.67 -40.82 -0.31 10.43 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.54 7.06 -51.93 -0.37 1.17 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.14 1.34 8.04 -52.48 -0.42 0.92 16 37 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.16 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.14 0.30 8.06 -52.48 -0.42 -0.12 16 40 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.14 0.93 6.41 -52.49 -0.34 0.59 16 42 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 43 H 0.10 0.77 4.95 -51.93 -0.26 0.51 16 44 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -36.06 373.54 -9.76 -45.82 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.88 Total: 5.92 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -3.96 Total: 0.09 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.25 Total: -59.97 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.28 Total: -15.17 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.06 -9.76 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733742386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.587 kcal (2) G-P(sol) polarization free energy of solvation -36.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds