Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99932 * 2 1 4 4 H 1.48501 * 109.46991 * 270.00233 * 3 2 1 5 5 H 1.48503 * 109.46919 * 29.99710 * 3 2 1 6 6 H 1.48494 * 109.47161 * 149.99711 * 3 2 1 7 7 C 1.38807 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00268 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00262 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47030 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.51062 * 304.89592 * 11 10 9 13 13 C 1.52883 * 109.62174 * 184.90481 * 11 10 9 14 14 N 1.47148 * 108.60936 * 187.89556 * 13 11 10 15 15 C 1.34774 * 120.98563 * 230.50242 * 14 13 11 16 16 O 1.21561 * 119.99889 * 5.50290 * 15 14 13 17 17 C 1.47769 * 120.00200 * 185.49807 * 15 14 13 18 18 C 1.40625 * 119.80863 * 219.18932 * 17 15 14 19 19 C 1.35695 * 120.92648 * 179.97438 * 18 17 15 20 20 C 1.40761 * 120.11006 * 0.02562 * 19 18 17 21 21 N 1.33651 * 120.83470 * 180.29779 * 20 19 18 22 22 C 1.31125 * 121.39379 * 180.28393 * 21 20 19 23 23 C 1.39316 * 121.76618 * 359.43285 * 22 21 20 24 24 C 1.36575 * 119.90561 * 0.28138 * 23 22 21 25 25 C 1.40889 * 118.16240 * 359.97438 * 24 23 22 26 26 C 1.38552 * 119.79958 * 39.21491 * 17 15 14 27 27 C 1.47152 * 118.03179 * 50.23050 * 14 13 11 28 28 C 1.53301 * 108.38714 * 309.71199 * 27 14 13 29 29 O 1.42955 * 109.51225 * 65.00489 * 11 10 9 30 30 H 0.96995 * 120.00285 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99893 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46945 * 59.99469 * 10 9 7 33 33 H 1.09003 * 109.47071 * 300.00182 * 10 9 7 34 34 H 1.09005 * 109.61685 * 68.07560 * 13 11 10 35 35 H 1.09001 * 109.52513 * 307.66840 * 13 11 10 36 36 H 1.08008 * 119.53826 * 359.97438 * 18 17 15 37 37 H 1.08006 * 119.94951 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.11405 * 179.71121 * 22 21 20 39 39 H 1.08003 * 120.04402 * 180.29873 * 23 22 21 40 40 H 1.08003 * 120.92210 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.30085 * 359.97438 * 26 17 15 42 42 H 1.08994 * 109.68304 * 69.43729 * 27 14 13 43 43 H 1.09002 * 109.68293 * 189.99494 * 27 14 13 44 44 H 1.08991 * 109.51332 * 172.22750 * 28 27 14 45 45 H 1.08994 * 109.51114 * 292.38555 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3810 -4.7142 0.8441 13 6 1.8209 -6.1422 0.1243 14 7 0.8690 -7.2477 -0.0678 15 6 0.8010 -8.2657 0.8128 16 8 1.4599 -8.2312 1.8338 17 6 -0.0746 -9.4238 0.5374 18 6 -0.8016 -10.0154 1.5857 19 6 -1.6126 -11.0793 1.3583 20 6 -1.7365 -11.6079 0.0596 21 7 -2.5357 -12.6516 -0.1819 22 6 -2.6551 -13.1563 -1.3862 23 6 -1.9669 -12.6259 -2.4752 24 6 -1.1372 -11.5552 -2.3005 25 6 -1.0074 -11.0191 -1.0041 26 6 -0.1740 -9.9205 -0.7522 27 6 -0.0108 -7.2059 -1.2466 28 6 -0.6823 -5.8288 -1.3001 29 8 0.3204 -4.8129 -1.2198 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6849 -3.7144 0.8905 33 1 2.6849 -3.7144 -0.8895 34 1 2.2728 -6.2145 1.1137 35 1 2.5978 -6.1897 -0.6388 36 1 -0.7131 -9.6175 2.5859 37 1 -2.1635 -11.5217 2.1752 38 1 -3.3079 -14.0030 -1.5388 39 1 -2.0896 -13.0606 -3.4562 40 1 -0.5961 -11.1307 -3.1333 41 1 0.3850 -9.4650 -1.5562 42 1 0.5784 -7.3623 -2.1501 43 1 -0.7715 -7.9822 -1.1647 44 1 -1.2296 -5.7269 -2.2371 45 1 -1.3716 -5.7271 -0.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733742386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = -17.400271 kcal Electronic energy + Delta-G solvation = -28717.548113 eV Core-core repulsion = 24699.881237 eV Total energy + Delta-G solvation = -4017.666877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17635 -41.26590 -39.65974 -37.79950 -36.71204 -35.89151 -34.54728 -33.95735 -32.22772 -31.63441 -31.10937 -29.38086 -27.43466 -25.78185 -25.15050 -24.69462 -23.92329 -23.17771 -22.40875 -21.01112 -19.39812 -19.18523 -18.59001 -18.11315 -17.65309 -17.37812 -16.99499 -16.60849 -16.49262 -16.07810 -15.84143 -15.47507 -15.43314 -15.36971 -15.05676 -14.97480 -14.56354 -14.38143 -14.20207 -14.03553 -13.95386 -13.49242 -13.17506 -13.13104 -12.78113 -12.71105 -12.58659 -12.51639 -12.27482 -12.06860 -11.88648 -11.71516 -11.56946 -11.27940 -11.03956 -10.96522 -10.49652 -9.91020 -9.70366 -9.33520 -9.01650 -7.94378 -5.24134 -0.82083 -0.34773 0.85711 1.30412 1.47630 1.50320 1.58383 1.60651 2.04843 2.56270 2.71553 3.03127 3.14736 3.33180 3.39526 3.49667 3.52700 3.71909 3.84166 3.90225 3.93741 3.95990 4.02145 4.06696 4.12282 4.27487 4.31344 4.40186 4.47722 4.50208 4.61494 4.68923 4.71202 4.79819 4.82871 4.91246 4.93896 5.00857 5.07405 5.13516 5.23160 5.24427 5.45415 5.48463 5.74428 6.12123 6.19669 6.26885 6.85733 6.89643 7.32923 8.06590 8.31050 9.29397 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.002087 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.024301 B =13410.580562 C =13818.652620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.161 3.839 11 C 0.087 3.913 12 H 0.043 0.957 13 C 0.095 3.905 14 N -0.605 5.605 15 C 0.560 3.440 16 O -0.573 6.573 17 C -0.142 4.142 18 C -0.066 4.066 19 C -0.103 4.103 20 C 0.123 3.877 21 N -0.514 5.514 22 C 0.139 3.861 23 C -0.172 4.172 24 C -0.047 4.047 25 C -0.125 4.125 26 C -0.040 4.040 27 C 0.067 3.933 28 C 0.037 3.963 29 O -0.384 6.384 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.147 0.853 38 H 0.189 0.811 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.166 0.834 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 -31.035 -8.628 32.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.034 3.966 11 C 0.028 3.972 12 H 0.061 0.939 13 C -0.028 4.028 14 N -0.338 5.338 15 C 0.351 3.649 16 O -0.453 6.453 17 C -0.145 4.145 18 C -0.087 4.087 19 C -0.121 4.121 20 C 0.002 3.998 21 N -0.223 5.223 22 C -0.033 4.033 23 C -0.191 4.191 24 C -0.073 4.073 25 C -0.127 4.127 26 C -0.059 4.059 27 C -0.054 4.054 28 C -0.040 4.040 29 O -0.303 6.303 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.206 0.794 39 H 0.195 0.805 40 H 0.193 0.807 41 H 0.183 0.817 42 H 0.127 0.873 43 H 0.137 0.863 44 H 0.149 0.851 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.822 -31.073 -7.450 32.315 hybrid contribution 0.271 1.429 0.063 1.456 sum -4.551 -29.644 -7.387 30.887 Atomic orbital electron populations 1.69840 1.06743 1.26081 1.59443 1.25641 0.96466 1.01324 1.03637 0.85073 0.77663 0.79107 0.77492 1.21241 1.22229 1.19261 1.19672 0.91634 0.85166 1.41307 0.90262 1.42432 1.05651 1.00916 1.89394 1.20766 0.93025 0.83757 0.99085 1.22377 0.93446 0.94362 0.87011 0.93882 1.22076 0.91842 0.84345 1.04538 1.48118 1.38373 1.21702 1.25583 1.18681 0.81499 0.82693 0.82071 1.90779 1.46818 1.80326 1.27386 1.19737 1.01205 0.97877 0.95645 1.20822 0.94156 0.94816 0.98873 1.20796 0.99343 0.96012 0.95981 1.19218 0.93682 0.92787 0.94071 1.68108 1.18157 1.10716 1.25290 1.23730 0.94922 0.97491 0.87125 1.22347 0.97334 0.97313 1.02130 1.21987 0.95624 0.94328 0.95319 1.18948 0.99976 0.98014 0.95761 1.21813 0.95115 0.93555 0.95426 1.23048 0.94985 0.99222 0.88145 1.23234 0.90125 0.86604 1.04032 1.88104 1.50492 1.54300 1.37389 0.94019 0.79425 0.93865 0.94705 0.88876 0.88412 0.84979 0.83485 0.79406 0.80532 0.80725 0.81650 0.87305 0.86296 0.85061 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.25 -14.13 9.99 84.03 0.84 -13.30 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -39.44 5.55 -343.45 -1.91 -41.34 16 10 C 0.16 6.62 5.93 86.38 0.51 7.13 16 11 C 0.09 2.99 2.80 30.56 0.09 3.08 16 12 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 13 C 0.10 2.64 5.92 86.22 0.51 3.15 16 14 N -0.61 -14.52 3.03 -821.64 -2.49 -17.00 16 15 C 0.56 14.95 7.33 86.76 0.64 15.58 16 16 O -0.57 -19.91 16.36 -3.91 -0.06 -19.97 16 17 C -0.14 -2.96 5.16 -20.10 -0.10 -3.07 16 18 C -0.07 -1.39 9.51 22.26 0.21 -1.18 16 19 C -0.10 -1.98 9.95 22.30 0.22 -1.76 16 20 C 0.12 2.30 6.61 40.36 0.27 2.57 16 21 N -0.51 -9.05 10.33 -188.44 -1.95 -11.00 16 22 C 0.14 1.38 11.15 85.06 0.95 2.33 16 23 C -0.17 -0.99 10.03 22.14 0.22 -0.77 16 24 C -0.05 -0.36 9.89 22.53 0.22 -0.14 16 25 C -0.12 -1.80 5.74 -21.29 -0.12 -1.92 16 26 C -0.04 -0.58 7.15 22.82 0.16 -0.42 16 27 C 0.07 1.15 5.00 86.36 0.43 1.58 16 28 C 0.04 0.86 6.99 72.08 0.50 1.36 16 29 O -0.38 -12.96 10.33 -148.98 -1.54 -14.50 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.37 21.48 7.67 -92.71 -0.71 20.77 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 2.81 7.06 -2.38 -0.02 2.79 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.13 2.84 8.04 -2.91 -0.02 2.81 16 37 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.18 -0.27 8.06 -2.91 -0.02 -0.29 16 40 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.17 1.50 6.41 -2.91 -0.02 1.48 16 42 H 0.11 1.33 8.02 -2.39 -0.02 1.31 16 43 H 0.12 1.53 4.95 -2.39 -0.01 1.52 16 44 H 0.13 2.31 8.14 -2.39 -0.02 2.30 16 45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -81.12 373.54 0.70 -80.42 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.32 Total: 25.11 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.02 Total: 10.06 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -6.06 Total: -130.11 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.60 Total: -34.47 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -81.12 0.70 -80.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733742386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.016 kcal (2) G-P(sol) polarization free energy of solvation -81.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds